ID:

dsi_14827

 Coordinate:

3r:17373905-17374054 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.2 -12.0 -11.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTAATAGTAGGCAAATCAAAATTTCTTCACATAAAACAATCAACTTCTACTTTCAAATATTTTCTAGACATATGTAACTATAGTTATTATTCTATTATTATACGGACTAAAAACTATTTAGCGCGTTGTTAGACTCGATTTATGGTTTGTACATATTAGACGACATTTTTATGGTATTCTCCTTTTTTTATTATTACTAGAATTATTACTCCCTATTTTAATTGACTTCTTAAATGGGCAACATCATTTG
****************************************************************************************..((((.(((..(((((((((.(((...((((((.....)))))).....))).))))))))).))).)))).....************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
........................................................................................ATTCTATTATTATACGGACTAAAAACT....................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................................................................TTTTTTTATTATTACTAGAATTATTACTC....................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................CTATTATTATACGGACTAAAAACT....................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................GTACGGACTAAAAACTATTTAGCGCGT............................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................GGTTTGTACATATTAGACGACA..................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTATTACTCCCTATTTTAATTG.......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................TTAGCGCGTTGTTAGACTCG................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................TACGGACTAAAAACTATTTAGCGCGTT........................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................................TATGGTTTGTACATATTAGACGACATT................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0
...........................................................................................................................CGTTGTTAGACTCGATTTATGGTTT...................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................ATACAGACTAAAAACTATTTAGCGCGT............................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................TCTATTATTATACGGACT.............................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................ATACGGACTAAAAACTATTTAGCGC.............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................TTGTACATATTAGACGACATTTTTATGGT........................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................TTTCTAGACATATGTAACTATAGTTATT.................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................TTCTATTATTATACGGACTAAAAAC........................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................ATTCTATTATTATACGGACT.............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................TTATTCTATTATTATACGGACT.............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATTGACTTCTTAAATGGGC........... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................GGTTTGTACATATTAGACGAC...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................TATAGATATACGGACTAAAAA......................................................................................................................................... 21 3 11 0.18 2 0 0 0 0 0 0 0 2
.......TAGGCAAATCAAAATT................................................................................................................................................................................................................................... 16 0 10 0.10 1 0 0 0 0 0 0 1 0
.....................................................................................................................TGAGCGCATTGTTAGA..................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 2 0
.......TAGGCAAATCAAAAT.................................................................................................................................................................................................................................... 15 0 12 0.08 1 0 0 1 0 0 0 0 0
.....................................................................................................................ATAGCGCGTCGTTATACT................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GATTATCATCCGTTTAGTTTTAAAGAAGTGTATTTTGTTAGTTGAAGATGAAAGTTTATAAAAGATCTGTATACATTGATATCAATAATAAGATAATAATATGCCTGATTTTTGATAAATCGCGCAACAATCTGAGCTAAATACCAAACATGTATAATCTGCTGTAAAAATACCATAAGAGGAAAAAAATAATAATGATCTTAATAATGAGGGATAAAATTAACTGAAGAATTTACCCGTTGTAGTAAAC
*************************************************************************************..((((.(((..(((((((((.(((...((((((.....)))))).....))).))))))))).))).)))).....**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
..............................................................................................AATAATATGCCTGATTTTTGATAAAT.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TGTATAATCTGCTGTAAAAA................................................................................ 20 0 1 1.00 1 0 0 1 0
............TTTAGTTTTAAAGAAGTGTAT......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.......................................................................................................................................................................................AAAAAATAATAATGAT................................................... 16 0 7 0.14 1 1 0 0 0
.................................................................................................................................................................................................................AGGGATTAAATTAAGTGAA...................... 19 2 11 0.09 1 1 0 0 0
......................................................................ATACAATGATGTCAATA................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1

Generated: 04/23/2015 at 05:27 PM