ID:

dsi_1481

Coordinate:

2r:5167483-5167550 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5166340_5167482_+]; CDS [2r_5166340_5167482_+]; CDS [2r_5167551_5168146_+]; exon [2r_5167551_5168146_+]; intron [2r_5167483_5167550_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------##################################################
TCAATAGCTGGTTAAGCCAAATGCCGGCTGGCCAGACAGCAAACTGGGTGGTGAGTTATTCTCCAGGGCTTCTATATTTGTATTTATCACAATTAAACATAATATTTTTCATCTACAGATGGGTAATCACGATCAGCGGAGAGTGGGTAGTCGCTACGGCGAGAACCG
**************************************************((((..(((......((....))......)))....))))............................**************************************************
Read size # Mismatch Hit Count Total Norm Total M024
male body
M053
female body
M025
embryo
O001
Testis
GSM343915
embryo
SRR553488
RT_0-2 hours eggs
SRR902008
ovaries
SRR618934
dsim w501 ovaries
............................................................................................................................AACCACGATCAGCGGAGAGT........................ 20 1 1 20.00 20 17 3 0 0 0 0 0 0
.............................................................................................................................ATCACGATCAGCGGAGAGT........................ 19 0 1 6.00 6 6 0 0 0 0 0 0 0
..........GTTAAGCCAAATGCCGGCTGGCCAGA.................................................................................................................................... 26 0 1 4.00 4 0 4 0 0 0 0 0 0
.....................................................................................................................GATGGGTAACCACGATCAGCGGAGG.......................... 25 2 1 3.00 3 3 0 0 0 0 0 0 0
.................CAAATGCCGGCTGGCCAGAC................................................................................................................................... 20 0 1 3.00 3 1 2 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGACAGCA............................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0
.....................................................................................................................GATGGGTAATCACGATCAGCGGAGAGTG....................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0
.....................................................................................................................GATGGGTAACCACGATCAGCGGAGAGT........................ 27 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................GTAACCACGATCATCGGAGAGT........................ 22 2 1 2.00 2 0 0 2 0 0 0 0 0
............................................................................................................................AATCACGATCAGCGGAGAGT........................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................GATGGGTAATCACGATCAGCGGAGA.......................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................ACCACGATCAGCGGAGAGT........................ 19 1 1 2.00 2 1 0 0 0 1 0 0 0
.....................................................................................................................GATGGGTAATCACGATCAGCGGAGAG......................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................ATGGGTAACCACGATCAGCGGAGAGT........................ 26 1 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................................................AATCACGATCAGCGGAGAGTG....................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................ATGGGTAATCACGATCAGCGGAGAGT........................ 26 0 1 2.00 2 1 1 0 0 0 0 0 0
.....................................................................................................................GATGGGTAACCACGATCAGCGGAGA.......................... 25 1 1 2.00 2 1 1 0 0 0 0 0 0
.....................................................................................................................GATGGGTAACCACGATCAGCGGAGAGG........................ 27 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................GATCAGCGGAGAGTGGGTAGT................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGACAAC................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................GATGGGTAACCACGATCAGCGGA............................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................TGGGTAATCACGATCAGCGGAGAGT........................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0
.........................GGCTGGACAGACAGCAAATTGGGT....................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0
..........GTTAAGCCAAATGCCGGCTGGCCA...................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................AGACAGCAAACTGGGTGATG................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................TCACGATCAGCGGAGAGTGG...................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................TGATGGGTAATCACGATCAGCGGAGA.......................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................GTGATGGGTAATCACGATCAGCGGA............................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................GATGGGTAATCACGATCAGCGGA............................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................AACCACGATCAGCGGAGAGG........................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................ATCAGCGGAGAGTGGGTAGTCGCTAC........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................TGCCGGCTGGCCAGACAGCAAACTGGGT....................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................CGATCAGCGGAGAGTGGGTAGTC................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................ACCACGATCAGCGGAGAGTGGGT.................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
................CCAAATGCCGGCTGGCCAGAC................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................AGACAGCAAACTGGGTGATGGGTAAT............................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0
.................CAAATGCCGGCTGGCCAGACAGCAAA............................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGA.................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................GATGGGTAATCACGATCAACGGAGAGTG....................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................TGGGTAATCACGATCAGAGGAGAG......................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0
..........GTTAAGCCAAATGCCGGCT........................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
......................GCCGGCTGGCCAGACAGCAAACTG.......................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................ATGGGTAACCACGATCAGCGGA............................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.................CAAATGCCGGCTGGCCAGACAGCA............................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................AATCACGATCAGCGGGGAGT........................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................TGGGTAACCACGATCAGCGGAGAGTG....................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................GGTAACCACGATCAGCGGAGAGTGGGTA................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................GACAGCAAACTGGGTGATGGGTAAT............................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGACAGCAAACTG.......................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................GGGTAACCACGATCAGCGGAGA.......................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................CACGATCAGCGGAGAGTGGGTAGTCGC.............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGACAGCAAACT........................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................CAGCGGAGAGTGGGTAGT................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.................CAAATGCCGGCTGGCCAGACA.................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................CACGATCAGCGGAGAGTGGGT.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................AACCACGATCAGCGGAGAG......................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................CGGAGAGTGGGTAGTCGCT............. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................ATGGGTAATCACGATCAGCGGA............................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................ACGATCAGCGGAGAGTGG...................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................GTGGGTAGTCGCTACGGC........ 18 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................GAGTGGGTAGTCGCTACGGCGA...... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
............................TGGCCAGACAGCAAATTGG......................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................TCACGATCAGCGGAGAGT........................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................CAGCGGAGAGTGGGTAGTCGC.............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................CCACGATCAGCGGAGAGT........................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................GCGGAGAGTGGGTAGTCGCTACGGCT....... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
................................CAGACAGCAAACTGGGTGATGGGT................................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................GGGTAGTCGCTACGGCGAGAA... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................ATGGGTAATCACGATCAGCGGAG........................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................AACCGCGATCAGCGGAGAGT........................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GGAGAGTGGGTAGTCGCTAC........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................GTGATGGGTAATCACGATCAGCGGAGAGC........................ 29 3 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................GTAATCACGATCAGCGGAGG.......................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................AATCACGATCAGCGGAGAGTGG...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGAC................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................GATGGGTAATCACGATCAGC............................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................AACCACGATCAGCGGAGAGC........................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................TAACCACCATCAGCGGAGAGT........................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................AACCACGATCAGCGGAGAGTG....................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
........TGGTTAAGCCAAATGCCGGCT........................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................CACGATCAGCGGAGAGTGG...................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................GGAGAGTGGGTAGTCGCTACGGCGA...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................GGTAATCACGATCAGCGGAGAGTGG...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.................CAAATGCCGGCTGGCCAGACAGCAA.............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................GGCCAGACAGCAAACTGGGT....................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................GTAACCACGATCAGCGGAGAGT........................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................GGGTAATCACGATCAGCGGAGA.......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................AACCACGATCAGCGGAGAGTGGGTA................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................CAGCGGAGAGTGGGTAGTGG............... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................GGCTGGCCAGACAGCAAACTGGG........................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................GTGATGGGTAATCACGATCAGCGTAGAGT........................ 29 3 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................CACGATCAGCGGAGAGTGGGTAGTCG............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................AAATGCCGGCTGGCCAGACAGCAAATTG.......................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................GGTAGTCGCTACGGCGAGAACC. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..........GTTAAGCCAAATGCCGGCTGGCCAGAC................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................GACAGCAAATTGGGTGATG................................................................................................................... 19 2 3 0.67 2 2 0 0 0 0 0 0 0
..................................GACAGCAAATTGGGTGATGGGT................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0 0 0
...................................ACAGCAAACTGGGTGATGG.................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0
...................................................................................................................GTGATGGGTAACCACGATCAGC............................... 22 3 4 0.25 1 0 0 1 0 0 0 0 0
................................................TGGAGAGTTATTCTC......................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1
...................................................................................................................CGGATGGGTAATCACCAAC.................................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0
..................................................................................................................................TAACAGCGGAGAGCGGGT.................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGTTATCGACCAATTCGGTTTACGGCCGACCGGTCTGTCGTTTGACCCACCACTCAATAAGAGGTCCCGAAGATATAAACATAAATAGTGTTAATTTGTATTATAAAAAGTAGATGTCTACCCATTAGTGCTAGTCGCCTCTCACCCATCAGCGATGCCGCTCTTGGC
**************************************************((((..(((......((....))......)))....))))............................**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
O002
Head
SRR618934
dsim w501 ovaries
...................................................ACTCAATAAGAAGTCC..................................................................................................... 16 1 3 1.67 5 5 0 0
.................................................CTACTCAATAAGAAGTCC..................................................................................................... 18 2 4 0.50 2 2 0 0
.............................CCGGTCTGTCGTTTAACC......................................................................................................................... 18 1 2 0.50 1 0 1 0
...................................................ACTCAATAAGAAGTC...................................................................................................... 15 1 10 0.30 3 3 0 0
..........................CGACCGTTCTGTCGTT.............................................................................................................................. 16 1 9 0.11 1 0 0 1
....................................................................................ATAGTGTCAATTTGTATA.................................................................. 18 2 11 0.09 1 0 0 1
................................................TCTACTCAATAAGAAGTCC..................................................................................................... 19 3 20 0.05 1 1 0 0

Generated: 04/23/2015 at 11:04 AM