ID:

dsi_14806

 Coordinate:

3r:4273420-4273540 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.9 -7.4 -6.9

Flybase annnotation

intergenic

No Repeatable elements found

mature
star
  1. 2l:18486180-18486198 -
  2. 2r:2701435-2701453 +
  3. 2r:7681579-7681597 +
  4. 3l:10972818-10972836 -
  5. 3l:13187474-13187492 -
  6. 3l:20790608-20790626 +
  7. dsi_14806  3r:4273496-4273514 -
  8. 3r:6463621-6463639 -
  9. 3r:15300426-15300444 +
  10. 3r:16459930-16459948 -
  11. 3r:19114330-19114348 -
  12. x:5766911-5766929 -
  13. x:9829034-9829052 +
  14. node_19165:98-116 +
  15. node_126448:96-114 +
  16. node_64804:28-46 +

Sense Strand Reads

TGGATTCCGATGGTCGCCTCGTTGACATTTACGCAAAGTTTGATGTGATTGTAAGTATGCCTCTTAGTGCTCACGGATAGATAGATAGATAGATGTGAAGCATAAATCTTTCCAACATATGTTGTATTGTTAGAGAGATCTTTAAGTAATGAAAATATTCTTTTCCTTCAGAATCTCGCCGCCGAGAAAACCTACAACGATCTCGATGTTTCGCTGCGCAA
****************************************************************************..............................((((((.((((..........)))).))))))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 GSM343915
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................................................AAACCTACAACGATCTCGAT.............. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........GATGGTCGCCTCGTTGAC................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CCTACAACGATCTCGATGT............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGCCGCCGAGAAAACCTACAACGATCTC................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................GTTGACATTTACGCAAAGT...................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................CAACATATGTTGTATTGTTAGAGAGA................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........GATGGTCGCCTCGTTGACA.................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................GAAAACCTACAACGATCTCGAT.............. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..GATTCCGATGGTCGCCTC......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CTACAACGATCTCGATGTTTCGCTG..... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAACCTACAACGATCTCGATG............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAAAACCTACAACGATCTCGATGTTT.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................CATTTACGCAAAGTTTGATGTGATT........................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................ACATTTACGCAAAGTTTGAT................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................TTACGCAAAGTTTGATGT............................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............CGCCTCGTTGACATTTACG............................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....TCCGATGGTCGCCTCGTTGACA.................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CTACAACGATCTCGATGTTTCGC....... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................................................ATGTTGTATTGTTAGAGA..................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................ATAGATAGATAGATAGATG.............................................................................................................................. 19 0 16 0.88 14 0 0 0 0 0 0 14 0 0
.............................TACGCAAAGTTTGTTGTTGTTG.......................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................TTTCGCCGCCGAGAAA................................ 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0
.........................CCTTTACGGAGAGTTTGAT................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 0 1
.........................CATTTACGGAGAGTTTGATC................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................AGAACCTCGCCGTCGAGAT................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ACCTAAGGCTACCAGCGGAGCAACTGTAAATGCGTTTCAAACTACACTAACATTCATACGGAGAATCACGAGTGCCTATCTATCTATCTATCTACACTTCGTATTTAGAAAGGTTGTATACAACATAACAATCTCTCTAGAAATTCATTACTTTTATAAGAAAAGGAAGTCTTAGAGCGGCGGCTCTTTTGGATGTTGCTAGAGCTACAAAGCGACGCGTT
***********************************************************************************..............................((((((.((((..........)))).))))))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.............................ATGCGTTTGGAACAACACTAA........................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
................AGAGCAACTGTAAATGCGTTTCAAAC................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
.......................................................................................................TTTAGAGAGGTTGTAT...................................................................................................... 16 1 4 0.25 1 0 0 1 0 0
.......................................................................................................................................................................AGCCTTAGTGCGGCGGCT.................................... 18 2 7 0.14 1 0 0 0 1 0
................................AGTTTCGAACTACACTAA........................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0
........................................................................................................................................................................GCCTTAGTGCGGCGGCT.................................... 17 2 13 0.08 1 0 0 0 1 0
......................................................................................................ATTTAGAAAGGGGGTATCC.................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 11:58 PM