ID:

dsi_14800

 Coordinate:

2r:5439098-5439247 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [2r_5438508_5439097_+]; exon [2r_5438508_5439097_+]; intron [2r_5439098_5448497_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAAACATTTGCTCTCCCCCACACTAACGCACGAGGAATGCTGTTTTGAGGTGAGTCGACGATCGATTTGTACAGTAAAACCGCCCTAAAACCGCCAGCTAACGCCGTAGTTGCTTCTGCCCAGATAACCCACTGAAACCGAATCGGAACTCCGGACTATCCATACTAAACCCCCATCTTTCGCGATACTCTTGAATAATTCAGCCTCGGATCGCAATCGCGATCGCAATCGCCATAGCGATCTGCAGTG
**************************************************..((((((.(((..(((..((..((((................((.(((.(((......))))))...)).(((........)))........((((....))))........))))..))....)))..))))))..))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
.......................................................CCGACGATCGAGTTCTACAGTA............................................................................................................................................................................. 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGATACTCTTGAATAATTCAGC............................................. 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.......................................................CCGACGATCGAGTTCTACAGT.............................................................................................................................................................................. 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CCTCGGATCGCAATCGCGA........................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................AACGCACGAGGAATGC................................................................................................................................................................................................................. 16 0 2 1.00 2 0 0 2 0 0 0 0 0 0
........................................................CGACGATCGAGTTCTACAGT.............................................................................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................CGACCATCGAGTTCTACAGTAA............................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................CGACGATCGAGTTCTACAGTC............................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................CGACGATCGAGTTCTACAGTCA............................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................ACTCACTGCAACCGAATCGTA...................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................AAAGGCCCATCGTTCGCGAT............................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0
........................................................CGACGATCGATTTGCA.................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0
............................................TTTGAGGAGAGTCGTAGATC.......................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0
................................AAGGAATGCTGTTTT........................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 2 0 0 0 0 0 0
................................GAGGATTGCTGTTTT........................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................TACTCTCGAATACTTTAGC............................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................GCCATAGCGCTCTGGA... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................CGGTTTGTACAGTCAGAC......................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTTTGTAAACGAGAGGGGGTGTGATTGCGTGCTCCTTACGACAAAACTCCACTCAGCTGCTAGCTAAACATGTCATTTTGGCGGGATTTTGGCGGTCGATTGCGGCATCAACGAAGACGGGTCTATTGGGTGACTTTGGCTTAGCCTTGAGGCCTGATAGGTATGATTTGGGGGTAGAAAGCGCTATGAGAACTTATTAAGTCGGAGCCTAGCGTTAGCGCTAGCGTTAGCGGTATCGCTAGACGTCAC
**************************************************..((((((.(((..(((..((..((((................((.(((.(((......))))))...)).(((........)))........((((....))))........))))..))....)))..))))))..))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR1275483
Male prepupae		 SRR1275487
Male larvae		 SRR902009
testis
.......................................................AGCTGCTAGCTAAACGTG................................................................................................................................................................................. 18 1 1 996.00 996 702 257 17 10 1 6 1 0 1 0 1 0 0
.....................................................TAAGCTGCTAGCTAAACGTG................................................................................................................................................................................. 20 2 2 223.00 446 319 117 2 3 0 4 0 0 0 0 0 1 0
......................................................AAGCTGCTAGCTAAACGTG................................................................................................................................................................................. 19 2 2 41.50 83 44 24 1 3 4 3 1 0 1 0 1 1 0
.......................................................GGCTGCTAGCTAAACGTG................................................................................................................................................................................. 18 2 6 10.33 62 45 16 1 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAACGT.................................................................................................................................................................................. 19 2 2 9.50 19 7 6 0 1 1 1 1 2 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAACG................................................................................................................................................................................... 18 2 9 7.11 64 44 18 0 2 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGTGC................................................................................................................................................................................ 19 2 1 6.00 6 4 0 0 0 1 0 0 1 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGTGCA............................................................................................................................................................................... 20 3 6 4.67 28 19 7 0 0 0 1 0 0 0 1 0 0 0
........................................................GCTGCTAGCTAAACGTG................................................................................................................................................................................. 17 1 1 4.00 4 0 0 0 0 1 0 2 1 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACTTG................................................................................................................................................................................. 18 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACCTG................................................................................................................................................................................. 18 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................CTGCTAGCTAAACGTG................................................................................................................................................................................. 16 1 4 2.75 11 0 0 0 0 4 0 2 1 0 4 0 0 0
.......................................................AGCTGCTATCTAAACGTG................................................................................................................................................................................. 18 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AAAACTGCACTCATCTACTAG.......................................................................................................................................................................................... 21 3 3 2.33 7 0 0 0 7 0 0 0 0 0 0 0 0 0
......................................................AAGCTGCTAGCTAAACGT.................................................................................................................................................................................. 18 2 4 1.75 7 3 3 0 1 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACG................................................................................................................................................................................... 16 1 3 1.67 5 0 0 0 0 4 0 0 0 0 1 0 0 0
.......................................................AGCTGCTAGCTAAACGTT................................................................................................................................................................................. 18 2 7 1.14 8 4 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................AGATGCTAGCTAAACGTG................................................................................................................................................................................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGTGTA............................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGTGTC............................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GAGCTGCTAGCTAAACGTG................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ATGATTTGGGGGTAGGAGG.................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................AGCTTCTAGCTAAACGTG................................................................................................................................................................................. 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ATGATTTGGTGGTAGGAAG.................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................TTAAGCTGCTAGCTAAAC.................................................................................................................................................................................... 18 2 9 1.00 9 3 5 0 1 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAAC.................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................CTGCTAGCTAAACGT.................................................................................................................................................................................. 15 1 15 0.87 13 0 0 0 0 3 0 0 0 0 10 0 0 0
..........................................................TGCTAGCTAAACGTG................................................................................................................................................................................. 15 1 11 0.64 7 0 0 0 0 2 0 0 2 0 3 0 0 0
......................................................TAGCTGCTAGCTAAACGTG................................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AAGCTGCTAGCTAAAC.................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAAC.................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAACGTGC................................................................................................................................................................................ 21 3 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAA..................................................................................................................................................................................... 16 1 6 0.50 3 0 0 0 0 2 0 1 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGTC................................................................................................................................................................................. 18 2 8 0.38 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCTATCTAAACGTG................................................................................................................................................................................. 20 3 9 0.33 3 3 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCTGCTAGCTAAACGTGGGA.............................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................AGCTCCTAGCTAAACGTG................................................................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCCAAACGTG................................................................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCTGCTAGCTAAACGTGC................................................................................................................................................................................ 18 2 6 0.33 2 0 0 0 0 1 0 0 1 0 0 0 0 0
.......................................................AGCTGCTAGCTATACGTG................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................AAGCTGCTAGCTAAACGTGC................................................................................................................................................................................ 20 3 6 0.33 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAATGTG................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........AACGAGAGGCGGTGTG.................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................AGCGGCTAGCTAAACGTG................................................................................................................................................................................. 18 2 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AACTGCTAGCTAAAC.................................................................................................................................................................................... 15 1 14 0.21 3 0 0 0 0 2 0 0 1 0 0 0 0 0
........................................................GCTGCTAGCTAAACGT.................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCGAAACGTG................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCTGCTAGCTAAACGTG................................................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGTTAAACGTG................................................................................................................................................................................. 18 2 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AAAACTGCACTCATCTACTA........................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGAG................................................................................................................................................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTTGCTAAACGTG................................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAA...................................................................................................................................................................................... 15 1 13 0.15 2 0 0 0 0 0 0 0 1 0 1 0 0 0
.......................................................AGCTGCTACCTAAACGTG................................................................................................................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGTTGCTAGCTAAACGTG................................................................................................................................................................................. 20 3 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGCCGCTAGCTAAACGTG................................................................................................................................................................................. 20 3 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCAGAAGCTAGCTAATCAT.................................................................................................................................................................................. 19 3 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGCTGCTAGCTAAAC.................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................AGCTGCTAGCTAAACGTA................................................................................................................................................................................. 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................CTGCTAGCTAAACGTGTA............................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTGCTAGCTAGACGTG................................................................................................................................................................................. 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............AAGGGGTCTGCTTGCGTGC......................................................................................................................................................................................................................... 19 3 16 0.13 2 0 0 0 0 2 0 0 0 0 0 0 0 0
............................GATGCTCCTTACGACA.............................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................TAAGCTGCCAGCTAAACGTG................................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AGGCGGGAACTTGGCGGT......................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2
......................................................AAGTTGCTAGCTAAACGTG................................................................................................................................................................................. 19 3 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCAACTGCTAGCTAA...................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................GCTGCTAGCTAAACG................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TAAGCTTCTAGCTAAACGTG................................................................................................................................................................................. 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........ACGAGAGGGTGCCTGATTG.............................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................CAGTCACCTGCTAGCTA....................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................TCTGCTAGCTAAACGTG................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAACGTA................................................................................................................................................................................. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCAAGCTAAACGTG................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................TAAGCTGCTAGCTAAACGTT................................................................................................................................................................................. 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AAGCTGCTATCTAAACGTG................................................................................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GCTTGCTAATCATGTC............................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................ATGAATTAGGGGTAGGAAG.................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................CTAAACTGCTAGCTAAAC.................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................ATGAACTGGGGGTAGGAAG.................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 02:51 PM