ID:

dsi_14784

 Coordinate:

3l:7860870-7861019 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.3 -13.8 -13.8

Flybase annnotation

CDS [3l_7861020_7861186_-]; exon [3l_7861020_7861186_-]; intron [3l_7859338_7861019_-]

No Repeatable elements found

mature
  1. dsi_14784  3l:7861004-7861018 -
  2. node_16720:30-44 -
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATGTGAAGCCCAATGAGCTGCGTCGTTTTCCAGTCCACGATACCGATCGGTGAGTATTATATATGTACATACATACATACATATGTAGGTTCCTGCCAAGAACCACATTAAACCTGTTTTTAGAGCCTACGGAGAGCTTTCCGATCGATTCGATCACTGAAGCTTGTTTTTGTTGCGAATCACAAGTGCTCATTCTTTATTTTAAACACCACATCCCATACCATTAAAGCCATAACAATCCAAAGCTTT
***************************************************.......(((.((((((......)))))).)))(((((((((.....((((((............)))))).)))))))))......**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
...................................................TGAGTATTATATATG........................................................................................................................................................................................ 15 0 2 3.00 6 6 0 0 0 0
...............................................................................................................AACCTGTTTTTAGAGCCTACGGAGAGC................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0
...........................TTTCCAGTCCACGATACCGATCGCTGC.................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0
..................................................GTGAGTATTATATATG........................................................................................................................................................................................ 16 0 2 1.00 2 2 0 0 0 0
.............................TCCAGTCCACGATACCGATCGGTGAG................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................GGAGAGCTTTCCGATCGATTCGA................................................................................................ 23 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................TTCGATCACTGAAGCTTGTTT................................................................................ 21 0 1 1.00 1 0 0 0 1 0
......................................................................................................................................................GCGATCACTGAAGCTT.................................................................................... 16 1 1 1.00 1 1 0 0 0 0
.....................................................................................GTAGGTCGCTGCCAAGA.................................................................................................................................................... 17 2 14 0.14 2 0 0 2 0 0
...............................................................................................................................................GATCGTTTCGGTCACCGAA........................................................................................ 19 3 19 0.05 1 0 0 0 0 1
...................................................TGAGTATTATATATC........................................................................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CTACACTTCGGGTTACTCGACGCAGCAAAAGGTCAGGTGCTATGGCTAGCCACTCATAATATATACATGTATGTATGTATGTATACATCCAAGGACGGTTCTTGGTGTAATTTGGACAAAAATCTCGGATGCCTCTCGAAAGGCTAGCTAAGCTAGTGACTTCGAACAAAAACAACGCTTAGTGTTCACGAGTAAGAAATAAAATTTGTGGTGTAGGGTATGGTAATTTCGGTATTGTTAGGTTTCGAAA
****************************************************************************************************************.......(((.((((((......)))))).)))(((((((((.....((((((............)))))).)))))))))......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............TACTCGACGCAGCAAAAGGTCAGGT.................................................................................................................................................................................................................... 25 0 1 7.00 7 7 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AATAAAATTTGTGGTGTA................................... 18 0 1 4.00 4 0 2 2 0 0 0 0 0
.............TACTCGACGCAGCAAAAGGTCAGGTG................................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
.........GGGTTACTCGACGCAGCAAAAGGTCAG...................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.........GGGTTACTCGACGCAGCAAAAGGT......................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
..........GGTTACTCGACGCAGCAAAAGGTCA....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
....................CGCAGCAAAAGGTCAGGTGCTATGGC............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............CTCGACGCAGCAAAAGGTCAGGTG................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..........GGTTACTCGACGCAGCAAAAGGTCAG...................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........GTTACTCGACGCAGCAAAAGGTCAG...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
................TCGACGCAGCAAAAGGTCAGGTGCT................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................GCTATGGCTAGCCACTCATAATATATGT........................................................................................................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0
.............AACTCGACGCAGCAAAAGGTCAGGTG................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................GTCAGCTGCTATGGCTAGCCACTCAT................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATTGTTAGGTTGCGAA. 16 1 5 0.60 3 0 0 0 1 2 0 0 0
......................................................................................................................................................................................................AAAAAATTTGGGGTGTAGAGTA.............................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................CTTGTTAGGTTTCGAA. 16 1 6 0.33 2 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................................CTTGTTAGGTTTCGA.. 15 1 7 0.29 2 0 0 0 1 1 0 0 0
.......................................................................................................................................................................AAAAAAAAAGCTTAGGGTTCAC............................................................. 22 3 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TTGTTAGGTTCCGAA. 15 1 8 0.13 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................TTTCGGACTTGTTAGGTT...... 18 2 8 0.13 1 0 0 0 0 0 0 0 1
..............................................................................................................................................GCTAGCTAAGCTAGAG............................................................................................ 16 1 8 0.13 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................TTGTTAGGTTACGAA. 15 1 10 0.10 1 0 0 0 0 0 0 1 0
....................................................................................................................................................TTAGCTTGTGACTTCGAAT................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................................TCGGATGCCTTGCGA............................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:32 AM