ID:

dsi_14768

 Coordinate:

2r:9177016-9177165 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.0 -1.1

Flybase annnotation

exon [2r_9176504_9177015_-]; CDS [2r_9176504_9177015_-]; intron [2r_9177016_9177582_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTTTCTCCATTTTTTTTTTCAATTAATAACAAAAATAAACATAAACAAATAAAAAACCAAATTTTGTAACGTAATCAAAATGCTATTAAATAAAATAAAACCAAAACTGGACTGCAATGCACCAACACCCACACACTGACCCCTGAACTGCATCGAATATCCGAACATATGTGTTGTGCACACCGTTTCTCTATATAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGACTCGCCA
*************************************************************************************.................(((....))).............***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 O001
Testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................ACTGGACTGCAATGCACC............................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGAAAATGGACGTGGACTCG... 20 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................ACGAAAATGGACGTGGACTCGCC. 23 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TTTGGTAGATGACAATACG..................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................TATTAAATAAAATAAAAC................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TTTCCATTTTTGGTAGATGACAATA....................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................GAAAATGGACGTGGACTC.... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................AATAAAACCAAAACTGGACC....................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGCCTTTCCATTTTTGATT................................. 20 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................................AAGACTGGACTGCATTGCTCC............................................................................................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0
............................................................................................................CTGGACTGCAATGAA............................................................................................................................... 15 1 20 0.15 3 0 0 0 3 0 0 0 0
..............................................................................................................................................................................GTTGAGCACACCGGTTCT.......................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................ATTTGTCGTAGATGTCAATA....................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................TTTCCATTTTTGGTA................................. 15 0 8 0.13 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TATATAGGCTTTCCAT......................................... 16 1 8 0.13 1 0 0 0 1 0 0 0 0
....TTCTCCATTTTTTTTTTCTGTT................................................................................................................................................................................................................................ 22 2 15 0.07 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAAAAAGAGGTAAAAAAAAAAGTTAATTATTGTTTTTATTTGTATTTGTTTATTTTTTGGTTTAAAACATTGCATTAGTTTTACGATAATTTATTTTATTTTGGTTTTGACCTGACGTTACGTGGTTGTGGGTGTGTGACTGGGGACTTGACGTAGCTTATAGGCTTGTATACACAACACGTGTGGCAAAGAGATATATCGGAAAGGTAAAAACCATCTACTGTTATGCTTTTACCTGCACCTGAGCGGT
*****************************************************************************************************************************.................(((....))).............************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 SRR1275487
Male larvae		 O002
Head
 GSM343915
embryo
 SRR902009
testis
 SRR1275483
Male prepupae		 SRR1275485
Male prepupae		 M024
male body		 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
......................................................................................................................TACGTGGTGGTGGGTGT................................................................................................................... 17 1 20 7.25 145 128 0 0 0 0 0 12 5 0 0 0
......................................................................................................................TACGTGGTTGTGGGTGTT.................................................................................................................. 18 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGTACGTGGTTGTGGGTGTT.................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CGTTACGTGGTGGTGGGTGT................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................TATACACAACACGTGTGGC............................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................GTACGTGGTTGTGGGTGT................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................TACGTGGTGGTGGGTGTGT................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGTTACGTGGTGGTGGGTG.................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GTGGCAAAGAGATATGTCGGG............................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACTGTTATGCTTTTACCT............. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GGTACGTGGTTGTGGGTGTT.................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CGTTACGTGGTGGTGGGTGTTTT................................................................................................................ 23 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GTTACGTGGTGGTGGGTGTTT................................................................................................................. 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................CCGTTACGTGGTGGTGGGTGT................................................................................................................... 21 2 13 0.31 4 0 4 0 0 0 0 0 0 0 0 0
........................................................................................................................CGTGGTGGTGGGTGTTTGACGGG........................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
............AAAAAAAAAGTGAATTATTTTT........................................................................................................................................................................................................................ 22 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATATATCCGAAAGGTA......................................... 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
......GAGGTAAGAAAAAAAGTAACTT.............................................................................................................................................................................................................................. 22 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
............AAAAAAAAAGTCAAGTAATGTT........................................................................................................................................................................................................................ 22 3 19 0.11 2 0 0 0 0 0 0 0 0 0 2 0
...................................................................................................................CGGTACGTGGTCGTGGGTGT................................................................................................................... 20 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGTACGTGGTGGTGGGTGTG.................................................................................................................. 21 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
...........AAAAAAAAAAGTCAAGTAATGTT........................................................................................................................................................................................................................ 23 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................TTACGTGGTGGTGGGTGTT.................................................................................................................. 19 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................CCGTTACGTGGTGGTGGGTGTT.................................................................................................................. 22 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACGGTACGTGGTGGTGGGTG.................................................................................................................... 20 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TCTACCTACACCTGAGCAG. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GGTACGTGGTCGTGGGTGT................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTACGTGGTGGTGGGTGTGT................................................................................................................. 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........AAAAAAAAAAATTAATCATTG.......................................................................................................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................GATACGTGGTGGTGGGTGT................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9176966-9177215 - dsi_14768 CTTTTT-CTCC------ATTT---------TTTTT----------TTCAA-TTAAT---------AAC-------AAAAAT--AA-A----------------------------------------------------------------------------CATAA-ACAAAT----------------------------AA----AAAA----C--CAAATTTTGTAACGTAATC-AA-A------------AT-----------------GCTATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-CTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCA
droSec2 scaffold_1:6014446-6014696 - CTTTTT-CTCC------ATTT--------TTTTTT----------TGCAA-TTAAT---------AAC-------AAAAAT--AA-A----------------------------------------------------------------------------CATAA-ACAAAT----------------------------AA----AAAA----A--CAAATTTTTTAACGTAATC-AA-A------------AT-----------------GCTATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-TTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCA
dm3 chr2R:8468086-8468334 - CTTTTT-CTCC------ATTT--------TTTTTT----------TGCAA-TTAAT---------AAC-------AAAAAC---AAC-----------------------------------------------------------------------------ATAA-ACAAAT----------------------------AA----AA-A----C--AAAATTTTGTAACGTAATC-AA-A------------AT-----------------GCTATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-CTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCA
droEre2 scaffold_4845:17331138-17331393 + CTTTTT-CTTCTTTAT------TT--TTTTTTTTT----------TGCAA-TTAAT---------AAC-------AAAACC---AAA-----------------------------------------------------------------------------ATAA-ACAAAT----------------------------AA----AAAA----C--AAAATTTTGTAACGTAACC-AA-A------------AT-----------------GCAATTAAATAAAA-------------CACA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-TTGAACTGCATCGAATATG-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---------------TCGCCA
droYak3 2R:8475895-8476138 + CTTTTT-CTTCTT-------T--------TTTTGT----------TGCAA-TTAAT---------AAC-------AAAACG---AAA-----------------------------------------------------------------------------ATAA-ACGAAT----------------------------AA----AAAA----TACAA-A-TTTTTAACGTAACC-AA-A------------AT-----------------GCAATTAAAAAA------------------A--AA-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCTACACACTGAC----CC-CTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCA
droEug1 scf7180000409672:4163606-4163862 + CTTTTT-CTTTTTTCT------TC--------TTA----------TTTTA-TTGAT---------AAC-------AAAACC---AAA-----------------------------------------------------------------------------ATATAACAAAT----------------------------GA----A--A----C--AAAATTTTGTAACGTAACA-AATAAAC---------CT-----------------GTAATTAAATAATA-------------TATAATAC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACAATCA--------------ACCACTCACTGTC----CC-CTGAACCACATCGAATATT-CGAAC----------ACCTAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----AAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTCGAC---------------TCGCCA
droBia1 scf7180000302291:1574389-1574637 + CTTTTT-CTTTTATCT------TC------TTTTT----------TGCAA-TGAAT---------AAC-------TTAACC---AAA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------GC----A--A----C--AATATTTTGTCACGTA-TA-----AAC---------CT-----------------GTAATTAAACAATA-------------CGAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTCCAATGCACCAACA--------------ACCACTCACTGAA----CC-CTGAACCACTTCGAATATC-CGAAC----------A--CAT------C-------CGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---------------TCGCCA
droTak1 scf7180000415762:694071-694322 + CTTTTT-CTTTTTTCT------TC------TTTTT----------TGCAA-TTAAT---------AAC-------AAA-CC---GAA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------AA----A--A----C--AAATTTTTGTAACGTAACA-AA-AAAC---------CT-----------------GTAATATAATGATA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACAAACA--------------ACCACTCACTGAC----CC-CTGAACCACATCGAATATC-CGAAC----------A--TAT------C-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCA
droEle1 scf7180000491201:280380-280658 - CTTTTT-CTTTTTTCT------TC------TTTTT----------TGCAA-TTACT-----TGATAACAAAAC--AAAACA---AAA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------GA----AA-A----C--CAAATTTTGTAACGTACAA-CAAACAC---------CT-----------------GTAATTAAACAATATATACATATAAAAAAAA--AA--AAAAACTGGACTGG-----------------------------------------------------A--------CTGCACTGCACTGCACCACCG--------------ACACCTCACTGAC----CC---------CATCGAATATT-CGAA-----------ACCTAT------G-------TGT---TG-TGCA--C-CCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCA
droRho1 scf7180000776809:15786-16033 + CTTTTT-CTTTTTTCT------TC-----TTTTTT----------TGCAA-TAAAT-----TAACAAC-------AAAACC----AA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------GA----A--A----C--AAAATTTTGTAACGTACAC-AA-AAAC---------CT-----------------GTAATTAAATAATG-------------TAAA--TC-----------------------------------------------------------------AAAAA--------CTGGACTGCAATGCACCACCA--------------ACCACTCACTGAC----CC---------CATCGAATATC-CGAAC----------C--TAT------G-------TGT---TG-TGCA--C-CCGTTTCTTTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAT---------------TCGCCA
droFic1 scf7180000454066:828871-829136 + CTTTTT-CTTTTTTCT------CCTTATTTTTTTT----------TGCAA-ATAAT-----TAA-AAC----C--AAAACC---CAA-----------------------------------------------------------------------------ATAA-ATCA-T----------------------------AA----A--A----C--AAATTTATGTAACGTAACA-CA----C---------AC-----------------GCAATTAAATAATA-------------TCAA--AC-----------------------------------------------------------------AAAAA--------CTGGACTGCAATGCACCACGAAAAAAA--------CCAACTCACTGAC----CCTCTGAACCACATCGAATATC-CGAAC----------C--TAT------G-------TGT---TG-TGCA--CGCCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---------------TCGCCT
droKik1 scf7180000302476:1219595-1219821 - CTTTTT-T------CTTCTTT--------TTATAC----------TGCAA-CCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTATTGTAACGTAACA-CA----CACGACAAATAT-----------------GTAATTGAATAACC-------------C------------------------------------------------------------------------AAACA--------CTGGACTGCAATGCACCACCA--------------ACCAC----TCAC----CT-CTGACCCACATCGACAATC-CAA----------------------------------T---TG-TGCATTCGCTGTTT-TCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGAGGTGGACACACCCACTACCAGCTCGCCC
droAna3 scaffold_13266:13067398-13067664 - TCTTTT-CTTTTTCCT------T----------TAAACCAAATCCGGTAA-TTAAT---------CAA---AC--AAA-CCACAAAC-----------------------------------------------------------------------------ATAA-ACCACT----------------------------GA----A--A----C--AAAATTCCGTAACGTAATATAAAAAAC---------CT-----------------GTAACCGAATAACA-------------CAAAAAAT-----------------------------------------------------------------CGAATCAAAAACCCTGGACTGCCATGCACCACCACCACCACCGCCACTAC----CACTCAC----AT-TTGAATCAC-TCGAATC--------------------------------------ACT---TG-TGCC--CG-CGATTC----TA-----TAGCCTTTCAATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---------------TCGCCG
droBip1 scf7180000396730:860107-860363 + CTTTTT-CTTTTT------T--TC------TTTTAAA--AAA----TCAA-TTAAT-----T-A-AAC-------AAAAAC---ACC-----------------------------------------------------------------------------ATAA-ACCACT----------------------------GA----A---------------CCTGTAACGTAATA-TAAACAC---------CT-----------------GTTATTAAAAAAAA-------------AAAAAAAACAAATAACTGC----------------------------------------------------------A--------ATGGACACCACCGCA-----ACC------------AACACCACCTCAC----AT-TCGAATCACTTCGATTACCCCGATCT---------C--TAT------G-------TGT---TG-TGAT----CCGCGACTCTATA-----TAGCCTTTCAATTTTTGGTAGATGACAATACAAAAATGGACGTTGAC---------------TCGCCT
dp5 3:12446439-12446683 + TTCTTC-TTTC------TTTTTG--------GTTA----------CGTAATTTAAT---ATTAA-AAA---AC--AAA-CC---ACC-----------------------------------------------------------------------------AAAA-ACCACT----------------------------GC----A--ACCCAC--AACCACTTGTAACGTAATG-AA-ACA--TC--------ATATAACGATATCTGTA---ACTGATTAACC-------------CCCA---------------------------------------------------------------------CAAAA--------ATGGAATGCA-----C----A--------------C----------------CTACTGAACCACATCGAATATC--GA--------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGAC-----------CAG-TCGCCG
droPer2 scaffold_99:101556-101799 - TTATTC-TTTC------TTTTTG--------GTTA----------CGTAATTTAAT---ATTAA-AAA----C--AAA-CC---ACC-----------------------------------------------------------------------------AAAA-ACCACT----------------------------GC----A--ACCCAC--AACCACTTGTAACGTAATG-AA-ACA--TC--------ATATAACGATATCTGTA---ACTGATTAACC-------------CCCA---------------------------------------------------------------------CAAAA--------ATGGAATGCA-----C----A--------------C----------------CTACTGAACCACATCGAATATC--GA--------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGAC-----------CAG-TCGCCG
droWil2 scf2_1100000004954:2085344-2085604 - TTTTCT-TTCT------TTTTTC--------CTAT----------TGTGT-TTCATCATATT----TT-------ATATTG--TAA-----------------------------------------------------------------------------TATAA-CCAAAT----------------------------AT----ATAA----C--AAAACT-------------------------------------------------ATTGTTGATTTATA-------------CAAA--------TTACTG---TGGACACTGATCGCATCTACGTCGCATCTGATCACATATAACAACAACCAAACAAAA--------CCAACCT--ATTCAATTACCA--------------CACACACATCGAA----TC-AAAAATCGAAT--------------------------------------------------------------CG----TTTTTA-----TAGCCTTTCAATTTTTGGTAGATGACAATACAAAAGTGGACGTTGAT-----------TTG-GTGCCA
droVir3 scaffold_12875:17113836-17114175 - dvi_7411 TCTTTTTCTTTTT-------T-TC----TTCTATT----------CGCAA-----------------AA--AAAAAAAAA---AAACGTAAATTTGAACTGAATTGAAATTGGCAAATCATTTACCGTTCGTTCGCAAACAAATTTGCATAAATAATTTGTAATTTAA-TCAACCGTAATTTGAAATGCATAATTTTGTTGAC-------TAA----C--AA--------AACGCCCA-----------------------------------------------------------------ACG--AC-----------------------------------------------------------------C--AA--------ATGGGCGGCCA----CAACGAAC----------------ATCACCGACCCAACG-T--ATACACTACGATCACCACAAACCACACAAAACA-ATCC-TTGTTGTTGTTGTTGTTGTTGTTGCA--CGCC-TT--TCTCTA-----TAGCCTTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---------------TCGCCA
droMoj3 scaffold_6496:10885261-10885449 + T----------------------------------------------------------------AAC-------AAAAAC--AA-A----------------------------------------------------------------------------AATAA--TGGGC----------------------------GAACCACCAA----TGAAA-A-TATTTA--------------------------------------------------AAATAAAA-------------AACA--ACCAA--------------------------------------------------------------CGAAC--------CACGATCACCACACACAAACA--------------CACACACAC---------------------------------AAA----------A--CAT------GTTGTCGTTGTTGTTGTTGCA--CG-CGAATATCTATA-----TAGCATTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---------------TCGCCT
droGri2 scaffold_15245:16645295-16645437 - A--------------------------------------------------------------A-AAC-------AAAAAC---AAC-----------------------------------------------------------------------------A----AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACAACAACA--------------ACAACACAAA-------------AACACCATCGAAAAC----AAC----------A--AATCTTGT-T-------TGTTGCCTGTGCA-----CGTTTTTCTCTA-----TAGCCTTTCCATTTTTGGTAGATGACAC---TAAAATGGACGTCGAC---------------TCGCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTTTT-CTCC------ATTT---------TTTTT----------TTCAA-TTAAT---------AAC-------AAAAAT--AA-A----------------------------------------------------------------------------CATAA-ACAAAT----------------------------AA----AAAA----C--CAAATTTTGTAACGTAATC-AA-A------------AT-----------------GCTATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-CTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................A--------CTGGACTGCAATGCACC....................................................................................................................................................................................................1812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAATGGACGTGGAC---------------TCG...2011.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATGGACGTGGAC---------------TCGCC.2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAGATGACAATACG....................................1911.00101000000000000000
.....................................................................................................................................................................................................................................................................................TATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------..................................................................................................................................................................................................................................1811.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTAGATGACAATA......................................2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---------------TC....1811.00100001000000000000
...............................................................................................................................................................................................................................................................................................AA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACC..............................................................................................................................................................................................................2011.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTA................................................1580.13100000010000000000
droSec2
CTTTTT-CTCC------ATTT--------TTTTTT----------TGCAA-TTAAT---------AAC-------AAAAAT--AA-A----------------------------------------------------------------------------CATAA-ACAAAT----------------------------AA----AAAA----A--CAAATTTTTTAACGTAATC-AA-A------------AT-----------------GCTATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-TTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTAGATGACAATACGAAA.................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---------------TCGT..1920.5010100
dm3
CTTTTT-CTCC------ATTT--------TTTTTT----------TGCAA-TTAAT---------AAC-------AAAAAC---AAC-----------------------------------------------------------------------------ATAA-ACAAAT----------------------------AA----AA-A----C--AAAATTTTGTAACGTAATC-AA-A------------AT-----------------GCTATTAAATAAAA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-CTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAGATGACAATACGAAAATGGACGT.........................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTAGAT.............................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAGATGACAATACGAA..................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000200000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---------------TCGCT.2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---------------TCGCC.2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---------------TCGCC.2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACGAAAATGGACGTGGAC---------------T.....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---------------TCGC..2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---------------TCG...1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---------------T.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACGAAAATGGACGTGGAC---------------TC....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TG-TGCA--CACCGTTTCTCTATA-----TAG.................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAATACGAAAATGGACGT.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTAGATGA...........................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----TAGCCTTTCCATTTTTG...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---------------TCGCC.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATC-CGAAC----------A--TAT------G-------TGT---TG-T.............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---------------ATC...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAATATC-CGAAC----------A--TAT------G-------TGT---.................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTAGATGACAATAC.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAATGGACGTGGAC---------------TCGC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT---TG-TGCA--CACCGTTTCTCTATA-----....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCA...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTTTCTCTATA-----TAGCCT..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTGCATCGAATATC-CG........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACGTGGAC---------------TCGCCA1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---------------T.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATC-CGAAC----------A--TAT------G-------TGT---T................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAGATGACAATACGAAAATGGAC...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................A--------CTGGACTGCAATGCACCAA..................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAATGGACGTGGAC---------------TCGCC.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGAAAATGGACGTGGAC---------------T.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTTTTGGTAGATGACAATACGA...................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---------------TC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAATATC-CGAAC----------A--TAT------G-------TGT---T................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---------------......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTTTTGGTAGATGACAATACGAAAA................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAATGGACGTGGAC---------------T.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----T...................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTTTTGGTAGATGACAATACGT...................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACGAAAATGGACGTGGAC---------------T.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACGAAAATGGACGTGGAC---------------......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTTTCTCTATA-----TAGCCTTTCCAT........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGACGTGGAC---------------TCGCC.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTTTTT-CTCC------ATTT--------TTTTTT----------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTTTTT-CTTCTTTAT------TT--TTTTTTTTT----------TGCAA-TTAAT---------AAC-------AAAACC---AAA-----------------------------------------------------------------------------ATAA-ACAAAT----------------------------AA----AAAA----C--AAAATTTTGTAACGTAACC-AA-A------------AT-----------------GCAATTAAATAAAA-------------CACA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCCACACACTGAC----CC-TTGAACTGCATCGAATATG-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---TG-TGCA--CACCGTTTCTCTATA-----TAG.................................................................2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAGATGACAATACAAAA.................................2111.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACAAAAATGGACGTGGA......................2211.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG-CGAAC----------A--TAT------G-------TGT---TG-T.............................................................................................1911.0010001000
droYak3
CTTTTT-CTTCTT-------T--------TTTTGT----------TGCAA-TTAAT---------AAC-------AAAACG---AAA-----------------------------------------------------------------------------ATAA-ACGAAT----------------------------AA----AAAA----TACAA-A-TTTTTAACGTAACC-AA-A------------AT-----------------GCAATTAAAAAA------------------A--AA-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACCAACA--------------CCTACACACTGAC----CC-CTGAACTGCATCGAATATC-CGAAC----------A--TAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATGGACGTGGAC---------------TCGCCT2411.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---------------TCGCC.2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAATATC-CGAAC----------A--TAT------G-------TGT---.................................................................................................2311.00100000010000
droEug1
CTTTTT-CTTTTTTCT------TC--------TTA----------TTTTA-TTGAT---------AAC-------AAAACC---AAA-----------------------------------------------------------------------------ATATAACAAAT----------------------------GA----A--A----C--AAAATTTTGTAACGTAACA-AATAAAC---------CT-----------------GTAATTAAATAATA-------------TATAATAC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACAATCA--------------ACCACTCACTGTC----CC-CTGAACCACATCGAATATT-CGAAC----------ACCTAT------G-------TGT---TG-TGCA--CACCGTTTCTCTATA-----AAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTCGAC---------------TCGCCASizeHit CountTotal NormTotal
No Reads
droBia1
CTTTTT-CTTTTATCT------TC------TTTTT----------TGCAA-TGAAT---------AAC-------TTAACC---AAA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------GC----A--A----C--AATATTTTGTCACGTA-TA-----AAC---------CT-----------------GTAATTAAACAATA-------------CGAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTCCAATGCACCAACA--------------ACCACTCACTGAA----CC-CTGAACCACTTCGAATATC-CGAAC----------A--CAT------C-------CGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotal
No Reads
droTak1
CTTTTT-CTTTTTTCT------TC------TTTTT----------TGCAA-TTAAT---------AAC-------AAA-CC---GAA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------AA----A--A----C--AAATTTTTGTAACGTAACA-AA-AAAC---------CT-----------------GTAATATAATGATA-------------TAAA--AC-----------------------------------------------------------------CAAAA--------CTGGACTGCAATGCACAAACA--------------ACCACTCACTGAC----CC-CTGAACCACATCGAATATC-CGAAC----------A--TAT------C-------TGT---TG-TGCA--CACCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotal
No Reads
droEle1
CTTTTT-CTTTTTTCT------TC------TTTTT----------TGCAA-TTACT-----TGATAACAAAAC--AAAACA---AAA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------GA----AA-A----C--CAAATTTTGTAACGTACAA-CAAACAC---------CT-----------------GTAATTAAACAATATATACATATAAAAAAAA--AA--AAAAACTGGACTGG-----------------------------------------------------A--------CTGCACTGCACTGCACCACCG--------------ACACCTCACTGAC----CC---------CATCGAATATT-CGAA-----------ACCTAT------G-------TGT---TG-TGCA--C-CCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---------------TCGCCASizeHit CountTotal NormTotal
No Reads
droRho1
CTTTTT-CTTTTTTCT------TC-----TTTTTT----------TGCAA-TAAAT-----TAACAAC-------AAAACC----AA-----------------------------------------------------------------------------ATAA-ACCAAT----------------------------GA----A--A----C--AAAATTTTGTAACGTACAC-AA-AAAC---------CT-----------------GTAATTAAATAATG-------------TAAA--TC-----------------------------------------------------------------AAAAA--------CTGGACTGCAATGCACCACCA--------------ACCACTCACTGAC----CC---------CATCGAATATC-CGAAC----------C--TAT------G-------TGT---TG-TGCA--C-CCGTTTCTTTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAT---------------TCGCCASizeHit CountTotal NormTotal
No Reads
droFic1
CTTTTT-CTTTTTTCT------CCTTATTTTTTTT----------TGCAA-ATAAT-----TAA-AAC----C--AAAACC---CAA-----------------------------------------------------------------------------ATAA-ATCA-T----------------------------AA----A--A----C--AAATTTATGTAACGTAACA-CA----C---------AC-----------------GCAATTAAATAATA-------------TCAA--AC-----------------------------------------------------------------AAAAA--------CTGGACTGCAATGCACCACGAAAAAAA--------CCAACTCACTGAC----CCTCTGAACCACATCGAATATC-CGAAC----------C--TAT------G-------TGT---TG-TGCA--CGCCGTTTCTCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---------------TCGCCTSizeHit CountTotal NormTotal
No Reads
droKik1
CTTTTT-T------CTTCTTT--------TTATAC----------TGCAA-CCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTATTGTAACGTAACA-CA----CACGACAAATAT-----------------GTAATTGAATAACC-------------C------------------------------------------------------------------------AAACA--------CTGGACTGCAATGCACCACCA--------------ACCAC----TCAC----CT-CTGACCCACATCGACAATC-CAA----------------------------------T---TG-TGCATTCGCTGTTT-TCTATA-----TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGAGGTGGACACACCCACTACCAGCTCGCCCSizeHit CountTotal NormTotal
No Reads
droAna3
TCTTTT-CTTTTTCCT------T----------TAAACCAAATCCGGTAA-TTAAT---------CAA---AC--AAA-CCACAAAC-----------------------------------------------------------------------------ATAA-ACCACT----------------------------GA----A--A----C--AAAATTCCGTAACGTAATATAAAAAAC---------CT-----------------GTAACCGAATAACA-------------CAAAAAAT-----------------------------------------------------------------CGAATCAAAAACCCTGGACTGCCATGCACCACCACCACCACCGCCACTAC----CACTCAC----AT-TTGAATCAC-TCGAATC--------------------------------------ACT---TG-TGCC--CG-CGATTC----TA-----TAGCCTTTCAATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---------------TCGCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACGAAAATGGACGT.........................2014.004010030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATGGACGTTGAC---------------T.....1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAATACGAAAATGGACGT.........................2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAATACGAAAATGGACGT.........................2211.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAATGGACGTTGAC---------------TC....2111.001000010
............................................................................AA-CCACAAAC-----------------------------------------------------------------------------ATAA-ACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
CTTTTT-CTTTTT------T--TC------TTTTAAA--AAA----TCAA-TTAAT-----T-A-AAC-------AAAAAC---ACC-----------------------------------------------------------------------------ATAA-ACCACT----------------------------GA----A---------------CCTGTAACGTAATA-TAAACAC---------CT-----------------GTTATTAAAAAAAA-------------AAAAAAAACAAATAACTGC----------------------------------------------------------A--------ATGGACACCACCGCA-----ACC------------AACACCACCTCAC----AT-TCGAATCACTTCGATTACCCCGATCT---------C--TAT------G-------TGT---TG-TGAT----CCGCGACTCTATA-----TAGCCTTTCAATTTTTGGTAGATGACAATACAAAAATGGACGTTGAC---------------TCGCCTSizeHit CountTotal NormTotal
No Reads
dp5
TTCTTC-TTTC------TTTTTG--------GTTA----------CGTAATTTAAT---ATTAA-AAA---AC--AAA-CC---ACC-----------------------------------------------------------------------------AAAA-ACCACT----------------------------GC----A--ACCCAC--AACCACTTGTAACGTAATG-AA-ACA--TC--------ATATAACGATATCTGTA---ACTGATTAACC-------------CCCA---------------------------------------------------------------------CAAAA--------ATGGAATGCA-----C----A--------------C----------------CTACTGAACCACATCGAATATC--GA--------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGAC-----------CAG-TCGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACGTAGAC-----------CAG-TCGCC.2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGACAATATCAAAATGGACGTAG.......................2711.0010000000010
droPer2
TTATTC-TTTC------TTTTTG--------GTTA----------CGTAATTTAAT---ATTAA-AAA----C--AAA-CC---ACC-----------------------------------------------------------------------------AAAA-ACCACT----------------------------GC----A--ACCCAC--AACCACTTGTAACGTAATG-AA-ACA--TC--------ATATAACGATATCTGTA---ACTGATTAACC-------------CCCA---------------------------------------------------------------------CAAAA--------ATGGAATGCA-----C----A--------------C----------------CTACTGAACCACATCGAATATC--GA--------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGAC-----------CAG-TCGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTTCT-TTCT------TTTTTC--------CTAT----------TGTGT-TTCATCATATT----TT-------ATATTG--TAA-----------------------------------------------------------------------------TATAA-CCAAAT----------------------------AT----ATAA----C--AAAACT-------------------------------------------------ATTGTTGATTTATA-------------CAAA--------TTACTG---TGGACACTGATCGCATCTACGTCGCATCTGATCACATATAACAACAACCAAACAAAA--------CCAACCT--ATTCAATTACCA--------------CACACACATCGAA----TC-AAAAATCGAAT--------------------------------------------------------------CG----TTTTTA-----TAGCCTTTCAATTTTTGGTAGATGACAATACAAAAGTGGACGTTGAT-----------TTG-GTGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAATACAAAAGTGGACGTT........................2412.00200200
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACAAAAGTGGAC...........................1811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----TC-AAAAATCGAAT--------------------------------------------------------------CG----TTTTT..........................................................................2311.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TC-AAAAATCGAAT--------------------------------------------------------------CG----TTTTTA-----TAGC................................................................2611.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACAAAAGTGGACGTT........................1911.00100100
droVir3
TCTTTTTCTTTTT-------T-TC----TTCTATT----------CGCAA-----------------AA--AAAAAAAAA---AAACGTAAATTTGAACTGAATTGAAATTGGCAAATCATTTACCGTTCGTTCGCAAACAAATTTGCATAAATAATTTGTAATTTAA-TCAACCGTAATTTGAAATGCATAATTTTGTTGAC-------TAA----C--AA--------AACGCCCA-----------------------------------------------------------------ACG--AC-----------------------------------------------------------------C--AA--------ATGGGCGGCCA----CAACGAAC----------------ATCACCGACCCAACG-T--ATACACTACGATCACCACAAACCACACAAAACA-ATCC-TTGTTGTTGTTGTTGTTGTTGTTGCA--CGCC-TT--TCTCTA-----TAGCCTTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---------------TCGCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACAC---TAAAATGGAAGT.........................2113.003000000000010010000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC---TAAAATGGAAGTCGA......................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CAACCGTAATTTGAAATGCATA.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TAAAATGGAAGTCGAC---------------T.....1811.001000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGATGACAC---TAAAATGGAAGT.........................2411.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAGATGACAC---TAAAAT...............................2111.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAAGTCGAC---------------TCG...1811.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---TAAAATGGAAGTCGAC---------------T.....1911.001000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGATGACAC---TAAAATGGAAGTCGA......................2711.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGATGACAC---TAAAATGGAAGTC........................2511.001000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAC---TAAAATGGAAGTCGAC---------------TC....2611.001000000000000000000000000000000000000100000000000000000000000000
...........TT-------T-TC----TTCTATT----------CGCAA-----------------AA--AAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACAC---TAAAATGGAAGTCGAC---------------T.....2611.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACAC---TAAAATGGA............................1811.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTAGATGACAC---TAAA.................................2211.001000000000000000000000000000000000001000000000000000000000000000
...............................TATT----------CGCAA-----------------AA--AAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000000000000000010000000000000000000000000
droMoj3
T----------------------------------------------------------------AAC-------AAAAAC--AA-A----------------------------------------------------------------------------AATAA--TGGGC----------------------------GAACCACCAA----TGAAA-A-TATTTA--------------------------------------------------AAATAAAA-------------AACA--ACCAA--------------------------------------------------------------CGAAC--------CACGATCACCACACACAAACA--------------CACACACAC---------------------------------AAA----------A--CAT------GTTGTCGTTGTTGTTGTTGCA--CG-CGAATATCTATA-----TAGCATTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---------------TCGCCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------------------------AAA----------A--CAT------GTTGTCGTTGTTGT.................................................................................................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------------------------AAA----------A--CAT------GTTGTCGTTGTTGTTG...............................................................................................2511.001000010
droGri2
A--------------------------------------------------------------A-AAC-------AAAAAC---AAC-----------------------------------------------------------------------------A----AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACAACAACA--------------ACAACACAAA-------------AACACCATCGAAAAC----AAC----------A--AATCTTGT-T-------TGTTGCCTGTGCA-----CGTTTTTCTCTA-----TAGCCTTTCCATTTTTGGTAGATGACAC---TAAAATGGACGTCGAC---------------TCGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAC---TAAAATGGACGTCGAC---------------T.....2211.00110

Generated: 05/18/2015 at 09:41 AM