ID:

dsi_14767

 Coordinate:

3r:10108184-10108333 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10108050_10108183_-]; CDS [3r_10108050_10108183_-]; intron [3r_10108184_10113919_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTAACAAACCGAAATGAGGATAGTATGTTTTCCCAAACCAAGCGTAGCAAATATTTATTTATGTGTATTTCTTGCCCCAAATTATTTAAGGCTTAGCACCGTAAGACATAAAGTAAACATTAAGATTTTAGCAATAAGTGTTCAGCGAATGGATATGCTATATCTGGTTCTTTCGACCATCGAACGTTTGTCTTATAGGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAAGA
**************************************************..............((((.......(((.............)))...)))).((((((((....((.........(((..(((((.....((((((.....))))))))))).)))(((((.....)))))....))...))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGTTGCTCGA... 27 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTGAACCGTCGCATCCAGTTGCT...... 23 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGTTGCT...... 24 0 1 4.00 4 3 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................CCGAGGTTGCCGCTCTGAACCGT.................... 23 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGTTGCTC..... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCGAGGTTGCCGCTCTGAACC...................... 21 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGAGGTTGCCGCTCTGAACC...................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGT.......... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGAGGTTGCCGCTCTGAACCGTCGCA................ 28 0 1 2.00 2 0 0 0 0 0 0 0 1 0 1
.............................................................................................................................................................................................................ATCCGAGGTTGCCGCTCTGAACCGT.................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCA............ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGTT......... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGTTGCCGCTCTGAACC...................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGAGGTTGCCGCTCTGAACCGTC................... 25 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGTTGCTCGG... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGAATCCGAGGTTGCCGCTCTGAACC...................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCCGCTCTGAACCGTCGCATCCAGT.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAGGTTGCCGCTCTGAACCGTCGCATCC............. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGCCGAATCCGAGGTT................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TGAACCGTCGCATCCAGTTGC....... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GGTTGCCGCTCTGAACCGTAGCATCC............. 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................ATCCGAGGTTGCCGCTCTGAAC....................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCTCTGAACCGTCGCATCCAGTTGCTC..... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTTGCCGCTCTGAACCGTCGCATCCA............ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TCTGAACCGTCGCATCCAGTTGC....... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTGAACCGTCGCATCCAGTTGCTC..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTCAACCGTCGCATCCAGTTGCTC..... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATCCGAGGTTGCCGCTCTGAACCGTC................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCTCTGAACCGTCGC................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CGGGCCGAATCCGAGGTTGCCGCTCTGA......................... 28 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................CCGAGGTTGCCGCTCTGAACCGTCGC................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGAGGTTGCCGCTCTGAACCGT.................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATCCGAGGTTGCCGCTCTGAACCGTC................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGCCGAATCCGAGGTTGCCGCTCTGAAC....................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTTGCCGCTCTGAACCGT.................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGAGGTTGCCGCTCTGAACCGTCGCATC.............. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCTGCTCTGTCCCGTCGCA................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GAACGCCGAATCCGAGGTT................................... 19 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATATGCTATAGCTGG................................................................................. 15 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................CGTAAGACATATGGTA..................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................AATACTTGTTCAGCGAA................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AAAATTGTTTGGCTTTACTCCTATCATACAAAAGGGTTTGGTTCGCATCGTTTATAAATAAATACACATAAAGAACGGGGTTTAATAAATTCCGAATCGTGGCATTCTGTATTTCATTTGTAATTCTAAAATCGTTATTCACAAGTCGCTTACCTATACGATATAGACCAAGAAAGCTGGTAGCTTGCAAACAGAATATCCGGCTTAGGCTCCAACGGCGAGACTTGGCAGCGTAGGTCAACGAGCTTCT
**************************************************..............((((.......(((.............)))...)))).((((((((....((.........(((..(((((.....((((((.....))))))))))).)))(((((.....)))))....))...))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................TCGTTATTCACAAGTCGCTTA.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................CCAGTCGCTTACCTAT............................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0
..............................CAAGGGTTTGGTTGGCATAGT....................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................TGGCAGCTTAGGTCAA......... 16 1 5 0.20 1 0 0 0 1 0 0
.....................................................................................................................................................................................AGGTGGCAAACAGAATTTC.................................................. 19 3 14 0.07 1 1 0 0 0 0 0
.............................AAAATGGTTTGGTTC.............................................................................................................................................................................................................. 15 1 16 0.06 1 0 0 0 0 0 1
...................................................................................................................................TAGTTATTCACAAGT........................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0
.AAATTGTTGGGCTTT.......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0
.AAATTGTTTGGTTTT.......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0

Generated: 04/24/2015 at 10:28 AM