ID:

dsi_1476

 Coordinate:

3r:10595294-10595353 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGCGGGTGCAGCAGTTGCAGCAGCAACAGCAAAGCAAAAGCTCTTCCAGGTGAGACAATCCTACTGATTTTTTAATACCTGAAATACTAATCATATTTTAAAATTTCAGCGGCAGTCAGTCGGATTACTCCAGTCAACGCAACTTTCTATCCTCAGCCA
**************************************************..............((((..((((((....(((........)))....))))))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 O001
Testis
 SRR618934
dsim w501 ovaries
........................................................................................................TTCCAGCGGCAGTCAGTCGGATTACTCCA........................... 29 1 1 2.00 2 2 0 0 0
........................................................................................................................................AACGCAACTTTCTATCCTCAGCC. 23 0 1 2.00 2 0 2 0 0
.......................................................................................................CTTCCAGCGGCAGTCAGTCGGATTACT.............................. 27 2 1 1.00 1 0 1 0 0
..................................................GTGAGACAATCCTACTGAT........................................................................................... 19 0 1 1.00 1 0 0 1 0
..............................................................................................................CGGCAGTCAGTCGGATTACT.............................. 20 0 1 1.00 1 1 0 0 0
............................................................................................................AGCGGCAGTCAGTCGGATTACTCCAGT......................... 27 0 1 1.00 1 1 0 0 0
.........................AACAGCAAAGCAAAAGCT..................................................................................................................... 18 0 2 0.50 1 1 0 0 0
...............................AAAGGAAAAGCTCTTC................................................................................................................. 16 1 14 0.07 1 0 0 0 1

Anti-sense strand reads

AGCGCCCACGTCGTCAACGTCGTCGTTGTCGTTTCGTTTTCGAGAAGGTCCACTCTGTTAGGATGACTAAAAAATTATGGACTTTATGATTAGTATAAAATTTTAAAGTCGCCGTCAGTCAGCCTAATGAGGTCAGTTGCGTTGAAAGATAGGAGTCGGT
**************************************************..............((((..((((((....(((........)))....))))))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
..................................................................................................................TCTGTCAGCCTAAGGAGGACA......................... 21 3 4 0.25 1 1
.......................................................................................................................................GTGGCGTAGAAGGATAGGAG..... 20 3 7 0.14 1 1
...................................................................................................................CTGTCAGCCTAAGGAGG............................ 17 2 19 0.05 1 1
.................................................................................................................GTCAGTCAGCCTAAGGG.............................. 17 2 20 0.05 1 1

Generated: 04/24/2015 at 10:45 AM