ID:

dsi_14738

 Coordinate:

2l:4428270-4428419 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.0 -13.6 -13.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCGCGATCGGCGGCTCAAGCTCCGCACATTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTGCCAAGTGGGCTTCTCTTTGGACAGTGTGTTAAGTGTTAAGTTCGGCTCCAGCAGTCCGGATAGATCATCTGAGCGGAGATCGTTGCCTTATTTGAATAGGCGGGGAATCTAACATCCATCGCCTAATTGCAGTGAAAGTTGCCGGGCATTTTTCAGCTATTTTACCCTGTGAAAATTCCGAA
****************************************************************************((...((((((..(((........(((....((((((((.....)).))))))....))))))..)))))).....))...********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
............................................................................GCTTCTCTTTGGACAGTG............................................................................................................................................................ 18 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0
................................................................TCTGCCAAGTGGGCTTCTCTTTGGACA............................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTGAGCGGAGATCGTTGCCTT............................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................GTGCGGTTCTCTGCCAAGTGGGCT........................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................CGGTTCTCTGCCAAGTGGGCTTCTCT...................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................GTGCGGTGCGGTTCTCTG...................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................GTGTTAAGTTCGGCTCCA.................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................CTCTGCCAAGTGGGCTTCTCTTTGGACAG.............................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................GCGGTTCTCTGCCAAGTGGGCTTCT........................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................TTCTCTCTGGACAGTGTGTTAAGTGT.................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................CGGTTCTCTGCCAAGTGGGCT........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................CGGTTCTCTGCCAAGTGGGC............................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTAACATCCATCGCCTAA........................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................GTGTTAAGTGTTAAGTTCGGCT....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TAGAGCATCTGAGCGGAGAGC..................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................TGTTAAGTTCGGCTCCAGCAGTCCGGA.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................ATCATCTGAGCGGAGATCGTTGCCT.............................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................GGGCTCTGCCAAGTCGGCTTC......................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................GCCCGGATAGCTCATCT................................................................................................................ 17 2 6 0.33 2 0 0 0 0 0 0 0 0 2 0
............................................................GTGCTCTGCTAAGTCGGCTTC......................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................CGGATAGAGCATCTGAC............................................................................................................. 17 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0
..............................TCAGTTCGTATTCAG............................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................AGTTCGGCTTCAGCA................................................................................................................................. 15 1 17 0.06 1 0 0 0 0 0 0 0 0 1 0
.............................................CGCGCGTGCAGTACGG............................................................................................................................................................................................. 16 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.................................................CCTGCGGTGCGGTTCTTTC...................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................AGTCCGGCTAGCTCAT.................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................CCGGTTAGAGCATCTGAC............................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................GTGCGGGGATCGTTGCC............................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAGCGCTAGCCGCCGAGTTCGAGGCGTGTAAGTCAAGCAAAAGTCGCGCGCACGCCACGCCAAGAGACGGTTCACCCGAAGAGAAACCTGTCACACAATTCACAATTCAAGCCGAGGTCGTCAGGCCTATCTAGTAGACTCGCCTCTAGCAACGGAATAAACTTATCCGCCCCTTAGATTGTAGGTAGCGGATTAACGTCACTTTCAACGGCCCGTAAAAAGTCGATAAAATGGGACACTTTTAAGGCTT
*********************************************************************************************((...((((((..(((........(((....((((((((.....)).))))))....))))))..)))))).....))...**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
............................................CGCGCGCACGCCACGCCA............................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
.............................................GCGCGCGCGCCACGC.............................................................................................................................................................................................. 15 1 4 0.25 1 0 1 0 0 0
............................................CGCGCGCGCGCCACG............................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0
.......................................................................TCACCCGAAGAAAGACATGT............................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0
...........................................TCGCGCGCACGTCGCGC.............................................................................................................................................................................................. 17 2 10 0.10 1 0 0 1 0 0
...........................................TCGCGCGCACGCCGCGTCT............................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0
...........................................TCGCGCGCACGCAATG............................................................................................................................................................................................... 16 2 14 0.07 1 0 0 1 0 0
................................................................AGACGGTTCACTCGATG......................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1
...........................................TCGCGCGCACGGCCCG............................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0
................................................................AGACGGTTAACCCGATG......................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4428220-4428469 - dsi_14738 C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------TTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCAGC--------------------------AGTCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droSec2 scaffold_5:2684779-2685028 - C---TCGTGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCAGC--------------------------AGTCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------
dm3 chr2L:4591799-4592048 - C---TCGCGATCGGCGGCT--------------------CAAGCT-TC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----TGGCTCCAGC--------------------------AGTCCGG--A---TAGATCATCC-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CTAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droEre2 scaffold_4929:4677853-4678102 - C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CAGCGCCAGC--------------------------ACTCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droYak3 2L:4612595-4612847 - C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGTCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T-GCTGAGCTCCAGC--------------------------AATCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droEug1 scf7180000409005:468990-469241 - C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-T------------------------------------CCGTGGACAT-----------TGTGTTAAGTG------------G--------------------------------------------------------------------------------------------ATTT-TCTTAGCTCCACC-AC------------------------CTCTGA--A---TA----ATCT-----AAGCGG---AGATC---ATTGCCTTATTTGCCTAG-GGGA-GG--AAT---CTAACAT--CCAT-----C---------GTCTAAT---T-ACAGTGAAAGTT---GCCGGGCTT-------------------------TTTTCA-GCA---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droBia1 scf7180000302188:1143883-1144122 - C---TCGCGATCGGCGGCC--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-C-----C-------------------------------------CTG-----------TGTGTCAAGTGT--------GTGAAGT----------------------------------------------------------------------------------------------------------------------------------------CTGG--A---TA----ATCTAA---CAGCGG---AGATC---ATTGCCTTATTTGAATGGGGCGG-GCTCATC---CTAACGG--CCAT-----C---------GTCTAATTGTT-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCA---ATTTT--ACCCCGTGAAAATTCC--GAA-------
droTak1 scf7180000415264:697226-697461 - C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-CTT------------------------------------C------------------TGCGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T-A-GCAGCTCCACC--------------------------AC--TGGTTA---TATA---TCTAATT-GATCGG---AGATC---GTTGCCTTATTTGAATAG----G-GG--AAT---CTAACAG--CCAC-----C---------GTCTAAT---T-ACAGTGAAAGTT---GCCGAGC----------------------------------------ATTTT--ACCCTGTGAAAATTCC--GAA-------
droEle1 scf7180000491046:2234506-2234757 - C---TCGCGATCCGCGGCT--------------------CCAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-T-----TCT----------------------------CTGTGGACAG-----------TGTGTTAAGTGT----------GG-----------------------------------------------------------------------------------------------------AGCTCCAC--ACC----------------------A--CTGA--A---TAATCTATCT-----TAACGG---AGATC---ATTGCCTTATTTGCCTAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GTCTAAT---T-GCAGTGAAAGTT---GCCGGGCTT-------------------------TTTTGA-TCA---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droRho1 scf7180000777227:381614-381857 - C---TCGCGATCGGCGGCT--------------------CCAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-T------------------------------------TTGTGGACAG-----------TGTCTTAAGTGT----------T------------------------------------------------------------------------------------------------T----GAGCTCCACC--------------------------AC--TGA--A---TA----ATCT-----TAGCGG---AGATC---ATTGCCTTATTTGCCTAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GTCTAAT---T-GCAGTGAAAGTT---GCCGGGCTT-------------------------TTTTGA-TCA---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droFic1 scf7180000453842:1660337-1660611 + C---TCGCGATCGGCGGCC--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTTGGCTTCT-T--CTACCAAGTGTTGGCTTC-------------------CCGTGGAC---------CAAGTGTACTAAGTGC----------TG-----------------------------------------------------------------------------------------------------AGCTCCGTC--------------------------ACTC--A--A---TA-ATAATCTTG---GATCGG---AGATC---ATTGCCTTATTTGCCTAG-GCGGGGG--AAT---CTAACGG--CCAT-----C---------GTCTAAT---T-GCAGTGAAAGTT---GCCGGGCGT-------------------------TT-TCAACCA---ATTTGAAACCCTGTGAAAATTCC--GAATTCCGAA
droKik1 scf7180000302472:3257092-3257345 - C---TCGCGATCGCCGACT--------------------GAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTCT-------------------CCCAGTGGGCT---CTTTCTTCG--------------------------------CGGTGGACAGTG---------TGTGTTAAGTGC----------CG----------------------------------------------------------------------------------------------------------------------------ACGGAGCA----AC--TGC--ATCATAAA---TCTTGGCGAAGCGA---AGATC---ATTGCCTTATTTGCTTAT-GAG---G--GATCGCCTCGCGT--CTC--GTCTC---------GTCTAAT---T-GCAGTGAAAGTTT-TGCCAGGC------------------------------T----CA---ATTTT--ACCCTGTGAAAATTCC--GAA-------
droAna3 scaffold_12943:3249105-3249401 + C---TCGCGATCGTCGGAT--------------------TTAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--C------------------CC-AGTGGATCTCGAT-------------------------T----------TAATATTGGACA-----------------------T----------TAA---------------------CC---------------TGGTCGATTCCAATTGGAAGCCA---GC-------------------------------------CCGAGCCACCG------CTGACGGAGTGACTGATTTCAG--A---TAAA---TCT-----TAGCGA---AGATC---ATTGCCTTATTTGTTTAT-TCGT-GG--GGT---CTCGCAT--CTCCCGTCTC-------CTGTCTAAT---T-GCAGTGAAAGTTT--GCCAGGCTTTGGT-------T---------AA---TTTCA-TCTACAATTTT--ACCTTGTGAAAATTCC--GAA-------
droBip1 scf7180000396433:152570-152867 + C---TCGCGATCGTCGGAT--------------------TTAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--C------------------CC-AGTGGATCTCGAT-------------------------T----------TAATATTGGACA-----------------------T----------TAA---------------------CC---------------TGGTCGATTCCAATTGGAAGCC----------------------------------------------AGCCACCG------CTGACGGAGCGACTGATTTCAG--A---TAAA---TCT-----TTGCGA---AGATC---ATTGCCTTATTTGTTTAT-TCGT-GG--GGT---CTCGCGT--CTCCCGTCTCCTGACTCCTGTCTAAT---T-GCAGTGAAAGTTT--GCCAGGCCTTGGT-------T---------AA---TTTCA-TCTACAATTTT--ACCTTGTGAAAATTCC--GAA-------
dp5 4_group3:11251793-11252115 + A---CGAAGATCGGCTGT----------GG------CTTTAAGCT-CTTTC-------------------------------------ACATTTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTCTA------------------CCAACGGGTCTCCTA------CGAAGTG----------------------------TGTGTACAGTGTGTACC---------GAGTGTACCAGTCTGTGTG-TTTGCACAGAGACAGTGTTACCTGTGTGTT--------GGCGGATACCCAGCTGCAGCC----GC-------------------------------------TTCAGCCGCTGCTGCCCCTGCCTGAGCGC------------A---TA----ATCT-----AAGCAACAAA--TATTTATTG---AATTTG----------------------------------------------------AAAT---T-GCAGTGAAAGTTTGCGTCAGGCGTCTGT-------T---------AATTGTTT----CA---ATTTT--ACCCTGTGAAAATTCC--AAATACCAAA
droPer2 scaffold_8:2486784-2487124 + A---CGAAGATCGGCTGT----------GG------CTTTAAGCT-CTTTC-------------------------------------ACATTTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTCTA------------------CCAACGGGTCTCCTA------CGAAGTG----------------------------TGTGTACAGTGTGTACC---------GAGTGTACCAGTCTGTGTG-TTTGCACAGAGACAGTGTTACCTGTGTGTT--------GGCGGATACCCAGCTGCAGCC----GC-TTCAGCCGCT-----------------TCA-GCCGCTTCAGCCGCTGCTGCCCCTGCCTGAGCGC------------A---TA----ATCT-----AAGCAACAAA--TATTTATTG---AATTTG----------------------------------------------------AAAT---T-GCAGTGAAAGTTTGCGTCAGGCGTCTGT-------T---------AATTGTTT----CA---ATTTT--ACCCTGTGAAAATTCC--AAATACCAAA
droWil2 scf2_1100000004516:2612352-2612426 + ----TCGGCAGCGGCGGCT---------------------AAACT-CT-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCTCGCGTGCGGTGCGGTTCACT--C---------------------------CTTCTCTT-----------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:11701956-11702277 + CGCTTCGGGATCGG--GCTGCAGCTCCA-G------CT-TCAGCT-CG-AA-----------------CCAAAGGCGAATTCGAATTGTGT-TTCAGTTCGTTTTTAGCGCGCGTGCGGTGCGGTTCTCTCTCTCTC----ATT----CATTCAACTGGCTTTCA-----------------ACTTCTCGATC---------A-ACAGCTGAACAG-----------TGTGCG---------GGGCTCTGAGGTCTGCA---------------------GTT--AACCATCATCAGCAGCAACTGGCAGCCA---ATCG-----CAAGGCAAATTTAATTTGA-------------------------------------------------------------------------------------------------TTTT------T--------------CAAAAATCTGCGC-----C---------GTTTAAT---T-ACAGTGAAAGTTT-TGTGAAGCGTCCGCAG--AAAT---------AAATTTTTCA---A---ATTTT--AC-CAGTGAAAATTTC--AAG-------
droMoj3 scaffold_6500:20394918-20395258 + A---TCGAGCGCAGCCTCAGT-------AG------CT-TCAGCT-CG-AA-----------------CCAGAGACGAATTCGAATTCTGT-TTCAGTTCGTTTTTAGCGCGCGTGCGGTGCGGTTCTCTCTCTCACACTAATTCATTCACTCCAGTGGCTCTCA-----------------ACAAATCGATCCAAGTGCTGA-ACAGCTGAACAG-----------TGTGCG---------GATCTGTGAGGTCTGCT---------------------GTTATAGCCAT--TCAACAG-------CATCCAT--ATC------CAAAGCAA---------------------------------------------------------------------------------------ACAA--------ATTCATTTGTTTTC--------------------CTAAAATCTGCAC-----C---------GTTTAAT---T-ACAGTGAAAGTTTTCGTGAGGCGTGCGCAACGAAATCAAATATCAAAATTTTTG---AA---ATTTT--ACC-CGTGAAAATCAAAGGAA-------
droGri2 scaffold_15126:5255976-5256319 + A---TCGTGAGCTGCTGCTGAAGCTTCA-GTTTCAGCT-TTAGTTTCAGTCACAGTGCTAGCTCCAAGCTGAAGGCGAATTCAAATTGAGT-TTCAGTTCGTTTTTAGCGCGCGTGCGGTGCGGTTCTTTCTCTCTC----ATTCATACATTCAAGTGGCTCTCA-----------------ACTTCTCGATC---------A-ATAGCTGAACAG-----------TGTGCG---------GGTCTCTGAGGTCTGCA---------------------GTT--GGCCA---------GCATCTGGCAGCCATACATC------CGAAGCAAAT-TAATTTGT---------------------------------------------------------------------------------------------TTTTC------------------------TTAAAATCTGCAC-----C---------GTTTTAT---TAATAGTGAAAGTTTGTGTGAGGCGTACGCAA--AAAT---------AAATTTTTCA---A---ATTTT--AC-AAGTGAAAATTGA--GAA-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------TTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCAGC--------------------------AGTCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................GCTTCTCT-----------------------------------------TTGGACAG-----------TG......................................................................................................................................................................................................................................................................................................................................................................................1817.00770000000000000000
...............................................................................................................................TCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------TTGGACA....................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CT-----GAGCGG---AGATC---GTTGCCTT...................................................................................................................................................................2112.00200200000000000000
......................................................................................................................GTGCGGTTCTCT--G------------------CCAAGTGGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.........................................................................................................................CGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.................................................................................................................GTGCGGTGCGGTTCTCT--G------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...........................................................................................................................................................................................................................................GTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCA....................................................................................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................................CTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------TTGGACAG-----------........................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000000000
........................................................................................................................GCGGTTCTCT--G------------------CCAAGTGGGCTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.........................................................................................................................CGGTTCTCT--G------------------CCAAGTGGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................CGGTTCTCT--G------------------CCAAGTGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACAT--CCAT-----C---------GCCTAA.......................................................................................................1811.00100001000000000000
....................................................................................................................................................................................................................................GTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCT.......................................................................................................................................................................................................................................................2211.00110000000000000000
............................................................................................................................................................................................................................................TGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCAGC--------------------------AGTCCGG--A---...........................................................................................................................................................................................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCT-----GAGCGG---AGATC---GTTGCCT....................................................................................................................................................................2511.00100100000000000000
droSec2
C---TCGTGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCAGC--------------------------AGTCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................GCTTCTCT-----------------------------------------CTGGACAG-----------TG......................................................................................................................................................................................................................................................................................................................................................................................1812.0020011
...............................................................................................AGTTCGTTTTCAGCGCGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
............................................................................................................................................................................................................................................TGT----------TAAGT--------------------------------------------------------------------------------------------T----CGGCTCCAGC--------------------------AGT.....................................................................................................................................................................................................................2211.0010001
.......................................................................................................................................................................................................................G-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CGG.........................................................................................................................................................................................................................................................2211.0010100
...............................................................................................................GCGTGCGGTGCGGTTCTCT--G------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................................................................................................GTGCGGTGCGGTTCTCT--G------------------CC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................CCAGC--------------------------AGTCCGG--A---TAGATCATCT-----GAG.........................................................................................................................................................................................2611.0010010
...............................................................................................................................................................GCTTCTCT-----------------------------------------CTGGACAG-----------TGT.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................................G-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----C...........................................................................................................................................................................................................................................................2011.0010010
......................................................................................................................................................................T-----------------------------------------CTGGACAG-----------TGTGTTAAG...............................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..........................................................................................................................GGTTCTCT--G------------------CCAAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...............................................................................................AGTTCGTTTTCAGCGCGCGTGCGGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCT-----GAGCGG---AGATC---...........................................................................................................................................................................1811.0010010
................................................................................................................................................................CTTCTCT-----------------------------------------CTGGACAG-----------TGTG....................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
dm3
C---TCGCGATCGGCGGCT--------------------CAAGCT-TC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----TGGCTCCAGC--------------------------AGTCCGG--A---TAGATCATCC-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CTAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................AGTTCGTTTTCAGCGCGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................GCTTCTCT-----------------------------------------CTGGACAG-----------TG......................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................GTGCGGTGCGGTTCTCT--G------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-GG--AAT---CTAACAT--CTAT-----C---------GC...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GCGCGTGCGGTGCGGTTCTCT--G------------------CCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTT....................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGTGGGCTTCTCT-----------------------------------------CTGGA......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTG....................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGGACAG-----------TGTGTTAAGTG.............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................CTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTG.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GGCTTCTCT-----------------------------------------CTGGACAG-----------TG......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AGTTCGTTTTCAGCGCGCGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTT............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GCTTCTCT-----------------------------------------CTGGACAG-----------TGTG....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CGTTTTCAGCGCGCGTGCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................CT--G------------------CCAAGTGGGCTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CGCGTGCGGTGCGGTTCTCT--G------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................GACAG-----------TGTGTTAAGTGT----------T.................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................AGTTCGTTTTCAGCGCGCGTGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................G------------------CCAAGTGGGCTTCTCT-----------------------------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCGTTTTCAGCGCGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GTTTTCAGCGCGCGTGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................GGGCTTCTCT-----------------------------------------CTGGACAG-----------TG......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................AG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----TGG.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTG.............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................CAGTTCGTTTTCAGCGCGCGTGCGGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................A---TAGATCATCC-----GAGCGG---AGATC---...........................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................AGTTCGTTTTCAGCGCGCGTGCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----TGGCT.......................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCC-----GAGCGG---AGATC---GTTGCCTTATT................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCGGTTCTCT--G------------------CCAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AGT--------------------------------------------------------------------------------------------T----TGGCTCCAGC--------------------------AGTCATC--...............................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T----CAGCGCCAGC--------------------------ACTCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................CTCT--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGA......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.................................................................................................................................T--G------------------CCAAGTGGGCTTCTCT-----------------------------------------CTGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................CTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGT..............................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................GTGGGCTTCTCT-----------------------------------------CTGGACAG-----------T.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................GCGTGCGGTGCGGTTCTCT--G------------------CCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.................................................................................................................GTGCGGTGCGGTTCTCT--G------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................AAGTGGGCTTCTCT-----------------------------------------CTGG.......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
........................................................................................................................................................CAAGTGGGCTTCTCT-----------------------------------------CTGGACAG-----------........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCT-----GAGCGG---AGATC---GTTGCCTTAT.................................................................................................................................................................2411.0010000010
...................................................................................................................................................................................................................GACAG-----------TGTGTTAAGTGT----------TAA...............................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................................................................................................................CGTGCGGTGCGGTTCTCC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010100000
................................................................................................................CGTGCGGTGCGGTTCTCT--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010
droYak3
C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGTCTTCTCT-----------------------------------------CTGGACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T-GCTGAGCTCCAGC--------------------------AATCCGG--A---TAGATCATCT-----GAGCGG---AGATC---GTTGCCTTATTTGAATAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GCCTAAT---T-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCT---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................G-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T-GC.............................................................................................................................................................................................................................................................2111.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCT-----GAGCGG---AGATC---GTTGCC.....................................................................................................................................................................2011.00110000000000
...................................................................................................................................................................................................................GACAG-----------TGTGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T-GC.............................................................................................................................................................................................................................................................2511.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................AGC--------------------------AATCCGG--A---TAGATCATCT-----............................................................................................................................................................................................2111.00100000100000
.....................................................................................................................GGTGCGGTTCTCT--G------------------CCAAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
droEug1
C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-T------------------------------------CCGTGGACAT-----------TGTGTTAAGTG------------G--------------------------------------------------------------------------------------------ATTT-TCTTAGCTCCACC-AC------------------------CTCTGA--A---TA----ATCT-----AAGCGG---AGATC---ATTGCCTTATTTGCCTAG-GGGA-GG--AAT---CTAACAT--CCAT-----C---------GTCTAAT---T-ACAGTGAAAGTT---GCCGGGCTT-------------------------TTTTCA-GCA---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
droBia1
C---TCGCGATCGGCGGCC--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-C-----C-------------------------------------CTG-----------TGTGTCAAGTGT--------GTGAAGT----------------------------------------------------------------------------------------------------------------------------------------CTGG--A---TA----ATCTAA---CAGCGG---AGATC---ATTGCCTTATTTGAATGGGGCGG-GCTCATC---CTAACGG--CCAT-----C---------GTCTAATTGTT-GCAGTGAAAGTT---GCCGGGCAT-------------------------TTTTCA-GCA---ATTTT--ACCCCGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
droTak1
C---TCGCGATCGGCGGCT--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-CTT------------------------------------C------------------TGCGTTAAGTGT----------TAAGT--------------------------------------------------------------------------------------------T-A-GCAGCTCCACC--------------------------AC--TGGTTA---TATA---TCTAATT-GATCGG---AGATC---GTTGCCTTATTTGAATAG----G-GG--AAT---CTAACAG--CCAC-----C---------GTCTAAT---T-ACAGTGAAAGTT---GCCGAGC----------------------------------------ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
droEle1
C---TCGCGATCCGCGGCT--------------------CCAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-T-----TCT----------------------------CTGTGGACAG-----------TGTGTTAAGTGT----------GG-----------------------------------------------------------------------------------------------------AGCTCCAC--ACC----------------------A--CTGA--A---TAATCTATCT-----TAACGG---AGATC---ATTGCCTTATTTGCCTAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GTCTAAT---T-GCAGTGAAAGTT---GCCGGGCTT-------------------------TTTTGA-TCA---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
droRho1
C---TCGCGATCGGCGGCT--------------------CCAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTGGGCTTCTCTT-T------------------------------------TTGTGGACAG-----------TGTCTTAAGTGT----------T------------------------------------------------------------------------------------------------T----GAGCTCCACC--------------------------AC--TGA--A---TA----ATCT-----TAGCGG---AGATC---ATTGCCTTATTTGCCTAG-GCGG-GG--AAT---CTAACAT--CCAT-----C---------GTCTAAT---T-GCAGTGAAAGTT---GCCGGGCTT-------------------------TTTTGA-TCA---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
droFic1
C---TCGCGATCGGCGGCC--------------------CAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--G------------------CCAAGTTGGCTTCT-T--CTACCAAGTGTTGGCTTC-------------------CCGTGGAC---------CAAGTGTACTAAGTGC----------TG-----------------------------------------------------------------------------------------------------AGCTCCGTC--------------------------ACTC--A--A---TA-ATAATCTTG---GATCGG---AGATC---ATTGCCTTATTTGCCTAG-GCGGGGG--AAT---CTAACGG--CCAT-----C---------GTCTAAT---T-GCAGTGAAAGTT---GCCGGGCGT-------------------------TT-TCAACCA---ATTTGAAACCCTGTGAAAATTCC--GAATTCCGAASizeHit CountTotal NormTotal
No Reads
droKik1
C---TCGCGATCGCCGACT--------------------GAAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTCT-------------------CCCAGTGGGCT---CTTTCTTCG--------------------------------CGGTGGACAGTG---------TGTGTTAAGTGC----------CG----------------------------------------------------------------------------------------------------------------------------ACGGAGCA----AC--TGC--ATCATAAA---TCTTGGCGAAGCGA---AGATC---ATTGCCTTATTTGCTTAT-GAG---G--GATCGCCTCGCGT--CTC--GTCTC---------GTCTAAT---T-GCAGTGAAAGTTT-TGCCAGGC------------------------------T----CA---ATTTT--ACCCTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
droAna3
C---TCGCGATCGTCGGAT--------------------TTAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--C------------------CC-AGTGGATCTCGAT-------------------------T----------TAATATTGGACA-----------------------T----------TAA---------------------CC---------------TGGTCGATTCCAATTGGAAGCCA---GC-------------------------------------CCGAGCCACCG------CTGACGGAGTGACTGATTTCAG--A---TAAA---TCT-----TAGCGA---AGATC---ATTGCCTTATTTGTTTAT-TCGT-GG--GGT---CTCGCAT--CTCCCGTCTC-------CTGTCTAAT---T-GCAGTGAAAGTTT--GCCAGGCTTTGGT-------T---------AA---TTTCA-TCTACAATTTT--ACCTTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATC---ATTGCCTTATTTGTTTAT-TCGT-...................................................................................................................................................2711.001000001
...............................................................................................AGTTCGTTTTCAGCGCGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
C---TCGCGATCGTCGGAT--------------------TTAGCT-CC-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCT--C------------------CC-AGTGGATCTCGAT-------------------------T----------TAATATTGGACA-----------------------T----------TAA---------------------CC---------------TGGTCGATTCCAATTGGAAGCC----------------------------------------------AGCCACCG------CTGACGGAGCGACTGATTTCAG--A---TAAA---TCT-----TTGCGA---AGATC---ATTGCCTTATTTGTTTAT-TCGT-GG--GGT---CTCGCGT--CTCCCGTCTCCTGACTCCTGTCTAAT---T-GCAGTGAAAGTTT--GCCAGGCCTTGGT-------T---------AA---TTTCA-TCTACAATTTT--ACCTTGTGAAAATTCC--GAA-------SizeHit CountTotal NormTotal
No Reads
dp5
A---CGAAGATCGGCTGT----------GG------CTTTAAGCT-CTTTC-------------------------------------ACATTTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTCTA------------------CCAACGGGTCTCCTA------CGAAGTG----------------------------TGTGTACAGTGTGTACC---------GAGTGTACCAGTCTGTGTG-TTTGCACAGAGACAGTGTTACCTGTGTGTT--------GGCGGATACCCAGCTGCAGCC----GC-------------------------------------TTCAGCCGCTGCTGCCCCTGCCTGAGCGC------------A---TA----ATCT-----AAGCAACAAA--TATTTATTG---AATTTG----------------------------------------------------AAAT---T-GCAGTGAAAGTTTGCGTCAGGCGTCTGT-------T---------AATTGTTT----CA---ATTTT--ACCCTGTGAAAATTCC--AAATACCAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................CTCTA------------------CCAACGGGTCTCCTA------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000100000
droPer2
A---CGAAGATCGGCTGT----------GG------CTTTAAGCT-CTTTC-------------------------------------ACATTTCAGTTCGTTTTCAGCGCGCGTGCGGTGCGGTTCTCTCTA------------------CCAACGGGTCTCCTA------CGAAGTG----------------------------TGTGTACAGTGTGTACC---------GAGTGTACCAGTCTGTGTG-TTTGCACAGAGACAGTGTTACCTGTGTGTT--------GGCGGATACCCAGCTGCAGCC----GC-TTCAGCCGCT-----------------TCA-GCCGCTTCAGCCGCTGCTGCCCCTGCCTGAGCGC------------A---TA----ATCT-----AAGCAACAAA--TATTTATTG---AATTTG----------------------------------------------------AAAT---T-GCAGTGAAAGTTTGCGTCAGGCGTCTGT-------T---------AATTGTTT----CA---ATTTT--ACCCTGTGAAAATTCC--AAATACCAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
----TCGGCAGCGGCGGCT---------------------AAACT-CT-GC-------------------------------------ACA-TTCAGTTCGTTTTCAGCTCGCGTGCGGTGCGGTTCACT--C---------------------------CTTCTCTT-----------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................CAGTTCGTTTTCAGCTCGCGTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................CAGTTCGTTTTCAGCTCGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
CGCTTCGGGATCGG--GCTGCAGCTCCA-G------CT-TCAGCT-CG-AA-----------------CCAAAGGCGAATTCGAATTGTGT-TTCAGTTCGTTTTTAGCGCGCGTGCGGTGCGGTTCTCTCTCTCTC----ATT----CATTCAACTGGCTTTCA-----------------ACTTCTCGATC---------A-ACAGCTGAACAG-----------TGTGCG---------GGGCTCTGAGGTCTGCA---------------------GTT--AACCATCATCAGCAGCAACTGGCAGCCA---ATCG-----CAAGGCAAATTTAATTTGA-------------------------------------------------------------------------------------------------TTTT------T--------------CAAAAATCTGCGC-----C---------GTTTAAT---T-ACAGTGAAAGTTT-TGTGAAGCGTCCGCAG--AAAT---------AAATTTTTCA---A---ATTTT--AC-CAGTGAAAATTTC--AAG-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................CGGTGCGGTTCTCTCTCTCTC----ATT----CATTCAACTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGTGAAGCGTCCGCAG--AAAT---------....................................................2111.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................ATT----CATTCAACTGGCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CTCGATC---------A-ACAGCTGAACAG-----------TGT.....................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
A---TCGAGCGCAGCCTCAGT-------AG------CT-TCAGCT-CG-AA-----------------CCAGAGACGAATTCGAATTCTGT-TTCAGTTCGTTTTTAGCGCGCGTGCGGTGCGGTTCTCTCTCTCACACTAATTCATTCACTCCAGTGGCTCTCA-----------------ACAAATCGATCCAAGTGCTGA-ACAGCTGAACAG-----------TGTGCG---------GATCTGTGAGGTCTGCT---------------------GTTATAGCCAT--TCAACAG-------CATCCAT--ATC------CAAAGCAA---------------------------------------------------------------------------------------ACAA--------ATTCATTTGTTTTC--------------------CTAAAATCTGCAC-----C---------GTTTAAT---T-ACAGTGAAAGTTTTCGTGAGGCGTGCGCAACGAAATCAAATATCAAAATTTTTG---AA---ATTTT--ACC-CGTGAAAATCAAAGGAA-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................ACTAATTCATTCACTCCAGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................................................................TCCAAGTGCTGA-ACAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..............................................................................................................................................................................................ATCCAAGTGCTGA-ACAGCTGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.................................................................................................................................................................CTCA-----------------ACAAATCGATCCAAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................CTCACACTAATTCATTCACTCCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.........................................................................................................................................................................................AATCGATCCAAGTGCTGA-ACAGCTGAA......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
...................................................................................................................................................................................................................................................ATCTGTGAGGTCTGCT---------------------GTTAT..............................................................................................................................................................................................................................................................................................................................2111.001000001
droGri2
A---TCGTGAGCTGCTGCTGAAGCTTCA-GTTTCAGCT-TTAGTTTCAGTCACAGTGCTAGCTCCAAGCTGAAGGCGAATTCAAATTGAGT-TTCAGTTCGTTTTTAGCGCGCGTGCGGTGCGGTTCTTTCTCTCTC----ATTCATACATTCAAGTGGCTCTCA-----------------ACTTCTCGATC---------A-ATAGCTGAACAG-----------TGTGCG---------GGTCTCTGAGGTCTGCA---------------------GTT--GGCCA---------GCATCTGGCAGCCATACATC------CGAAGCAAAT-TAATTTGT---------------------------------------------------------------------------------------------TTTTC------------------------TTAAAATCTGCAC-----C---------GTTTTAT---TAATAGTGAAAGTTTGTGTGAGGCGTACGCAA--AAAT---------AAATTTTTCA---A---ATTTT--AC-AAGTGAAAATTGA--GAA-------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:45 PM