dsi_14736

five_prime_UTR [2r_16006277_16006406_+]; exon [2r_16006277_16006406_+]; intron [2r_16006407_16007562_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTCAGTTGACGACGTTTGCGTCAGAGTTACAGAGGAGGAGCTATAATTTAGTACCAATACCCAAACCCCCACGTAAAATGAGTGCGAAAAATTGCGAAAGCCGCGTGCCTCTGCGATAAGATAAGTGTGTGTGGCTAAAGAACTCCTCCGGCCAACGAAACGAACCTTTTAATAATCGGGATTTGCGCGAAATGTGATTTTTTATAGTCCATAGACCAAGTGAAAAAAAAGAAAGAAAATATTCACACAC **************************************************************************************************************************************((............((((......(((............))).....)).)).........))*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	M024 male body	O002 Head	O001 Testis	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
...................................................................................................................................................................................GATTTGCGCGAAATGTGATT...................................................	20	0	1	1.00	1	0	0	0	0	0	0	1	0
...................................................................................................................................................................................GATTTGCGCGAAATGTGATTTTTTATA............................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTTATAGTCCATAGACCAAG..............................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
........................................................................................................................................AAAGAACTCCTCCGGCCAA...............................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................................................................TAAAGAACTCCTCCGGCCAACGAAAC.........................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
................TGCGTCAGAGTTACAGAGGAG.....................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
....................TCAGAGTTACAGAGGAGGAGC.................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AATAATCGGGATTTGCGCGAAATGT.......................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0
....................TCAGAGTTACAGAGGAGGAG..................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................GCGTGCCTCTGCGATAAG..................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................AACCTTTTAATAATCGG.......................................................................	17	0	1	1.00	1	0	0	0	0	0	1	0	0
..........................................................................................................................................AGAACTCCTCCGGCCAACGAA...........................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.....................................................................................................................................................................CTTTTAATAATCGGGATT...................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................TGCGAGGAATGTGATTTTT................................................	19	2	5	0.20	1	0	0	0	0	0	0	0	1

CAGTCAACTGCTGCAAACGCAGTCTCAATGTCTCCTCCTCGATATTAAATCATGGTTATGGGTTTGGGGGTGCATTTTACTCACGCTTTTTAACGCTTTCGGCGCACGGAGACGCTATTCTATTCACACACACCGATTTCTTGAGGAGGCCGGTTGCTTTGCTTGGAAAATTATTAGCCCTAAACGCGCTTTACACTAAAAAATATCAGGTATCTGGTTCACTTTTTTTTCTTTCTTTTATAAGTGTGTG *************************************************((............((((......(((............))).....)).)).........))**************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.................................................................................................................................................GAGGCCGGTTGCTTTGCTT......................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................GAGGAGGCCGGTTGCTTTGCTTG.....................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0
..........................................................................................................CGGAGACGCTATTCTATTC.............................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
..................GCAGTCTCAATGTCTCCTCCTCGATA..............................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................TCAGGTATCTGGTTCACTTTT........................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................ATGGTTATGGGTTTGGGGGTG..................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................................AGGCCGGTTGCTTTGCTTGGAAAAT...............................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................AGGGGTGCGTTTTACT.........................................................................................................................................................................	16	2	20	0.25	5	0	0	0	0	0	0	3	2
.....................................................................................................................................................................................................AAAAAATATCAGATATC....................................	17	1	4	0.25	1	0	0	0	0	1	0	0	0
................................................................TAGGGGTGCGTTTTACT.........................................................................................................................................................................	17	2	20	0.20	4	0	0	0	0	4	0	0	0
..................................................................................................................................................AGGCCGAATGCTTTGCT.......................................................................................	17	2	6	0.17	1	0	0	0	0	0	1	0	0
...........TGCAAACGCAGTCTCAAGAA...........................................................................................................................................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:16006357-16006606 +	dsi_14736	GTCA----GT-TG---ACGACGTTTGCGTCAGAGTT-ACAGAG--G--AGG--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTAA--AATG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGTGTGTGTGGCTAAAGAACTCCT-C----------------CGGCCAACGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCATAGACCA----AGTG-AAAAAAA----AGAAAGA-AAATATTCACACAC------------------------
droSec2	scaffold_1:12873611-12873861 +		GTCA----GT-TG---ACGACGTTTACGTCAGAGTT-ACAGAG--G--AGG--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTAA--AATG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGTGTGTGTGGCTAAAGAACTCCT-C----------------CGGCCAACGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCATAGACCA----AGTG-AAAAAAA---AAGAAAGA-AAATATTCACACAC------------------------
dm3	chr2R:15355097-15355347 +		GCCT----GT-CG---ACGACGTTTACGTCAGAGTT-GCAGAG--G--AGG--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACGAATAC---CCAAACCCC--------------------CACGTAA--AATG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAACCGTGTGTGGTTAAAGAACTCCT-C----------------CGGCCAACGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCACAGACCA----AGTG-AAAAAAA---AAGAAAGA-AAATACTCACACAC------------------------
droEre2	scaffold_4845:9553778-9554027 +		GTCA----GT-CG---GCGACGTTTACGTCAGAGTT-ACACAG--G--AGG--------------------AGCAATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAT---CCAAACCCC--------------------CACGTAA--AACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGCGTGTGTGGCTAAAGAACTCCT-C----------------CGGCCAATGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCATAGCCAA----AGTG-TAAAAAA----AGAATGA-AAATACTCGCACAC------------------------
droYak3	2R:13820869-13821117 -		GTCA----AT-CG---GCGACGTTTACGTCAGAGTT-ACAAAG--G--AGT--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTAA--AACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGCGTGTATGGCTA-AGAACTCCT-C----------------CGGCCAACAA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATTGTCCATAGCTGA----AGTG-AAAAAAA----AAAAAGA-AAATACTCACACAC------------------------
droEug1	scf7180000409474:2600217-2600493 -		GTCA----GA-CA---TCGTCGTTTACGTCAGAGTT-ACAGAA--G--AGGAGGAGGAGTCAAGCAACAAAAGCTATAATTTAAT----------------------------------ATTGCTCA------------------------T---------------------------ACTGGTATAC-CC-TGCCCC--------------------CACGTAA--AACG----------AGTGCAAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------CCGATAAGATAAGCGTGTACGGCTAAAGAACTCCT-C----------------CGGCCAACGA-AATGAACCT-TT--------A---TTAATCGGGATTTGCGCGAA-ATGTGATTTTTT--TA-------CAGCCCA----AGTG-AAAAAACTAAATATAAGA-AAATACCCACACAC------------------------
droBia1	scf7180000302143:2845855-2846104 +		GTCA----AT-CG---GCGGCGTTTACGTCAGAGTT-ACACAG--C-------------------AACAAAAGCTATCACTTAGT----------------------------------------------------------------------------------------------GCTGGTACACCCCAAACCCC--------------------CACGTAAAAAACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCCCT-------------------------TCGATAAGATAAGCGTTCGCGGCTAAAGAACTCCT-C----------------CGGCCGACGG-AACGAACCT-TT--------A---ATAATCGGGATTTGCGAGAA-ATGTGATTTTTT--TA-------TGGCCGC----AGTG-AAAAAAA-----ATTAGA-AAATACCCACACAC------------------------
droTak1	scf7180000415910:152453-152719 -		GGTAGGCAAT-CG---GCGGCGTTTACGTCAGAGTT-ACACAGAAG--AGGAG------TCG-GCAGCAAAAGCTATAATTTAAT----------------------------------------------------------------------------------------------ACTAATAC---CCATGCCCC--------------------CACGTAAAAAACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------TTGATAAGATAAGCGTGTGCGGCTAAAGAACTCCT-C----------------CGGGCGACGA-AACGAACCT-TT--------A---ATAATCGGGATTTGTGCAAA-ATGTGATTTTTT-TTA-------TAGCCCA----AGTG-GAAAAAAGA--AATAAGA-AAATACCCACACAC------------------------
droEle1	scf7180000491201:1803338-1803565 +		-----------CG---GCGGCGTTTACGTCAGAGTT-ACAGAG--G--AG---------C----CAACCAAAGCAATAATTTAAT----------------------------------------------------------------------------------------------A---------------CCCC--------------------CACGTAA--AGCG----------AGTGCGAAA-A--TTGCGAAAGC--CGCGTGCCTCT-------------------------CCGATAAGATAAGCGTG--TGGCTAAAGAACTCCT-C----------------CGGCCAACGAAAACGAACCT-TT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT-TTA-------TAACTCA----AGTG-ATAAAT--------AAGAAAAGTACCCACACAC------------------------
droRho1	scf7180000780066:287334-287568 -		GTC-----GT-CG---GCGGCGTTTACGTCAGAGTT-ACAGAG--G--AG---------C----CAACAAAAGCTATAATCTAAT----------------------------------------------------------------------------------------------A---------------CCCC--------------------CACGTAA--AGCG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCA-------------------------CCGATAAGATAAGCGCG--CGGCTAAAGAACTCCT-C----------------CGGCCAACGAAAACGAACCT-TT--------A---ATAATCGGGATTCGCGCGAA-ATGTGATTTTTTTTTA-------TAGCTTA----AGTG-ATAAAT--------AAGAAAAATACCCACACAC------------------------
droFic1	scf7180000454039:644699-644927 +		GTCG----GT--GGTGGCAGAGTTTACGTCAGAGTT-ACAGAG--G--AGGAG------C----CAGCAAAAGCTATAATTCAA-------------------------------------------------------------------------------------------------------------AACCCC--------------------CACGTAA--AGCG----------AGTGCGAAAAA--TTGCGAAAGC--CGCATGCCTCT-------------------------CCGATAAGATAAGCGCG--CGGCTAAAGAACTTCT-C----------------CGGCCAATGA-AACGAACCT-TA--------A---ATAATCGGGATTTACGCGAA-ATGTGATTT-------------------------AGTG-AAAAAAA----GAAAAGA-AAATACCCACACAC------------------------
droKik1	scf7180000302471:1614550-1614788 +		GTCA----GTATAGTGGTG--GTTTACGTCAGAGTT-ACAGAGCAA--AGGAG------C----------AGGCTATAATTCGAT----------------------------------------------------------------------------------------------AC-----------------------------------------------AGCG----------AGTGCGAAAAG--TTGCGAAAGC--CGCGTGCCT---------------------------CCGATAAGATAAGCG----CGGCTAAAGAACTCCTACCAACCAACCGAGCGAGCGACTGACGA-AACGAACCT-TT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT-TTATTGTC-AAAGTCAA----AGTG-AAAAA-----------GC-A-AAACCCATACAC------------------------
droAna3	scaffold_13266:9924956-9925190 -		G---------------------TTTACGTCACAGTT-ACAAAG--CCATAG--------------------AGCTATAATTTAC-----------------------------------ACTCTTCG-------------------------------------------------------GGTCT------------CTCCCCCCTTCTTCTCGGCCCACGTAA--AACG----------AGTGCGAAAAG--TTGCGAAAGC--CGCGTGCCT---------------------------GCGATAAGATAAGAGCGT-CGGTTAAGGAACACCT-T-------------------------------------TTTTTTTTAAA---ATAATCGGGATTTGCGCGAA-AAGTGATTTTAA-AAATTGTG--------AACAAA----AAAAAAA---GAGAAAGA-ATAAACTCACACAG------------------------
droBip1	scf7180000396427:1067167-1067373 -		TTTG-----T-AG---TTTACGTTTACGTCAGAGTT-ACAGAG--G--CCT--------------------ACCTCTACCT----------------------------------------------------------------------------------------------------------------------CTACCGTCCCGACCCCGGCCCACGTAA--AACT----------AGTGCGAAAAG--TTGCGAAAGC--CGCGTGCCT---------------------------GCGATAAGATAAGCGTG--CGGTTACC----------------------------------------CTACCT-TT--------A---ATAATCGGGATTTGCGCGAA-ATGTGA-----------------------------------------------AAGA----AACCCACACACAGATGAATGGGAATTACTATATAC
dp5	3:6499117-6499367 -		GCTG-----G-CG---GCG-CGTTTACGTCATAGTA-ACACTC--G--A------------------------------------ACGGACGGAAGGGACGGATGGCCGT-TAATAAAGAC-------------------------------AAATAAATCTAAAATATAGCATTACTG--------------------CTACCCCTCTCCGC------TGGGTAA--A-TG--------CAAATGCGAAAGAACTTTCGAAAGCCCCGCGTGTGTGA-------------------------CTGATAAGATAACTGCG--CGAATAAAGAAC---------------------------------------------------------GAAAACGGGATTTATGCGAAAAAGTGATACTCT---CTT-CCCAA--ATA-----AGGGGAGAAAT-----ATAAAGA-GA------------------------------------
droPer2	scaffold_2:6718720-6718970 -		GCTG-----G-CG---GCG-CGTTTACGTCATAGTA-ACACTC--G--A------------------------------------ACGGACGGAAGGGACGGATGGCCGT-TAATAAAGAC-------------------------------AAATAAATCTAAAATATAGCATTACTG--------------------CTACCCCTCTCCGC------TGGGTAA--A-TG--------CAAATGCGAAAGAACTTTCGAAAGCCCCGCGTGTGTGA-------------------------CTGATAAGATAACTGCG--CGAATAAAGAAC---------------------------------------------------------GAAAACGGGATTTGTGCGAAAAAGTGATACTCT---CCT-CCCAA--ATA-----AGGGGAGAAAT-----ATAAAGA-GA------------------------------------
droWil2	scf2_1100000004514:1322477-1322728 +		TCTTG---AC-TG---GCGGCGTTTACGTCAGAGTTTACATT--------------------------------------CTCATACGGACGG--------------CGTATAATTAAGACGGCTCGGGTTTTCGGGCTCTCGGGTGAAAT-AAATAAAT-------------------GTATATAC---ACTCCTCAC--------------------TTCGTGA--AACA----------AATGCAATGAA--TTGCGAAAGC--CGCGTGTGACT------GACTGTT-----GCGTTGGCTGATAAGATAGC-----------------------C----------------CTACCGCCGA-TAAGGACCCCTG--------AACAGAAAT---------CGCGAA-TTGTGCTCTTTT---TT------------------------------------------AATAATCCCCCAT------------------------
droVir3	scaffold_12875:11801549-11801751 -		-----------TG---GCGGCGTTTACGTCAGAGTT-ACAAAC--T--GTG--------C----TAAGAAATCTTATGAGTGTAT----------------------------------------------------------------------------------------------ACGCATAC---TTATA--AA--------------------CATGTAA--TATAAATACATGCAAGTGCAAGGC-------------------------TCTAATTGCAGACCGCGTG----TGATTGATAAGCTC-----G--GCGATAAAGAAA-----------------------------------CT------AC--------A----------------GTGCAAA-TTTCAATTTTT----A-----------CAA----ATTG-AAAAAAATA--AGCGATG-AAATGTT----TGC------------------------
droMoj3	scaffold_6496:15059672-15059881 +		GCTT----AT-TT---AAGAAATCTAAAGCTAAAGC-AAAGCA--G--AGT------------------------ATA-TATTAT----------------------------------------------------------------------------------------------ACGCATAC---T--TATCTA--------------------CTTGTAA--TATA----------AATGCAGACAA--CT-----AAC--TGTGTTTCTCT-------------------------ACAATTGCACA-CCGTGTACGATTGATAAGATC-G-C----------------CGATAAAAA----TG--------------------AAAAACGAGCATT--ACAAA-CTGAAATATCTT---CG------AATTTCT----AATA-AAACA------GCCAACG-AAATGTT----TGC------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTCA----GT-TG---ACGACGTTTGCGTCAGAGTT-ACAGAG--G--AGG--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTAA--AATG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGTGTGTGTGGCTAAAGAACTCCT-C----------------CGGCCAACGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCATAGACCA----AGTG-AAAAAAA----AGAAAGA-AAATATTCACACAC------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCGCGAA-ATGTGATT........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCGCGAA-ATGTGATTTTTT---ATA..............................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT---ATAGTCCATAGACCA----AG............................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AAAGAACTCCT-C----------------CGGCCAA.................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAAAGAACTCCT-C----------------CGGCCAACGA-AAC..........................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGCGTCAGAGTT-ACAGAG--G--AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................TCAGAGTT-ACAGAG--G--AGG--------------------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................A---ATAATCGGGATTTGCGCGAA-ATGT............................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCAGAGTT-ACAGAG--G--AGG--------------------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCGTGCCTCT-------------------------GCGATAAG.....................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AACCTTTT--------A---ATAATCGG.............................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGAACTCCT-C----------------CGGCCAACGA-A............................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CTTTT--------A---ATAATCGGGATT.........................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTCA----GT-TG---ACGACGTTTACGTCAGAGTT-ACAGAG--G--AGG--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTAA--AATG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGTGTGTGTGGCTAAAGAACTCCT-C----------------CGGCCAACGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCATAGACCA----AGTG-AAAAAAA---AAGAAAGA-AAATATTCACACAC------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................................................................................................................................TTT--------A---ATAATCGGGATTTGCGC....................................................................................................	21	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................GTGTGTGTGGCTAAAGAACTC............................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................GATAAGATAAGTGTGTGTGG.......................................................................................................................................................................................	20	1	1.00	1	0	1	0	0

dm3

GCCT----GT-CG---ACGACGTTTACGTCAGAGTT-GCAGAG--G--AGG--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACGAATAC---CCAAACCCC--------------------CACGTAA--AATG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAACCGTGTGTGGTTAAAGAACTCCT-C----------------CGGCCAACGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCACAGACCA----AGTG-AAAAAAA---AAGAAAGA-AAATACTCACACAC------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................TAATTTAGT----------------------------------------------------------------------------------------------ACGAATAC---CCAAACCCC--------------------.................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTTTACGTCAGAGTT-GCAGAG--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GACGTTTACGTCAGAGTT-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TAAGATAACCGTGTGTGGTTA....................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGAGTT-GCAGAG--G--AGG--------------------AGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................CAGAGTT-GCAGAG--G--AGG--------------------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TACGTCAGAGTT-GCAGAG--G--AGG--------------------AGCTA................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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...........................................................................ATAATTTAGT----------------------------------------------------------------------------------------------ACGAATAC---CCA...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACGTCAGAGTT-GCAGAG--G--AGG--------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TACGTCAGAGTT-GCAGAG--G--AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA---AAGAAAGA-AAATACTC..............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................A--AATG----------AGTGCGAAAAA--TTGCG........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AAAAAAA---AAGAAAGA-AA....................................	18	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTCA----GT-CG---GCGACGTTTACGTCAGAGTT-ACACAG--G--AGG--------------------AGCAATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAT---CCAAACCCC--------------------CACGTAA--AACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGCGTGTGTGGCTAAAGAACTCCT-C----------------CGGCCAATGA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATAGTCCATAGCCAA----AGTG-TAAAAAA----AGAATGA-AAATACTCGCACAC------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................GATAAGATAAGCGTGTGTGGCTAAA..................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	1	1	0
.............................CAGAGTT-ACACAG--G--AGG--------------------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................GAACTCCT-C----------------CGGCCAATGA-AAC..........................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................GCAATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAT---CC............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
GTCA----GT-CG---GCGACGTTTACGTCAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................AA--AACG----------AGTGCGAAAAA--TTGCGAA......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................GATAAGCGTGTGTGGCTAAAG.................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATAGTCCATAGCCAA----AGT...........................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................GATAAGATAAGCGTGTGTGGC......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................................................TTAGT----------------------------------------------------------------------------------------------ACCAATAT---CCAAACCCC--------------------CACGTA...........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................GATAAGATAAGCGTGTGTGGCT.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAGCCAA----AGTG-TAAA.....................................................	19	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................AAACCCC--------------------CACGTAA--AACG----------AGT.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCGCGAA-ATGTGATT........................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AAGATAAGCGTGTGTGGC......................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................GTGTGTGGCTAAAGAACTCCT-C----------------C.......................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT---ATAGTCCATAGCCAA----AGTG-TAA......................................................	26	1	1.00	1	0	0	0	0	0	1	0
...................................T-ACACAG--G--AGG--------------------AGCAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.......................TTACGTCAGAGTT-ACACAG--G--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
GTCA----GT-CG---GCGACGTTTACGTCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCGCGAA-ATGTGATT........................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................AT---CCAAACCCC--------------------CACGTAA--AACG----------AGTGCGA...................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATAAGATAAGCGTGTGTGGT......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0

droYak3

GTCA----AT-CG---GCGACGTTTACGTCAGAGTT-ACAAAG--G--AGT--------------------AGCTATAATTTAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTAA--AACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------GCGATAAGATAAGCGTGTATGGCTA-AGAACTCCT-C----------------CGGCCAACAA-AACGAACCTTTT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT---ATTGTCCATAGCTGA----AGTG-AAAAAAA----AAAAAGA-AAATACTCACACAC------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................GATAAGATAAGCGTGTATGG.......................................................................................................................................................................................	20	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CTA-AGAACTCCT-C----------------CGGCC...................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.........................ACGTCAGAGTT-ACAAAG--G--AGT--------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
GTCA----AT-CG---GCGACGTTTACGTCAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGCGTGTATGGCTA-AGAACTCCT-C----------------CGGC....................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................TAGT----------------------------------------------------------------------------------------------ACCAATAC---CCAAACCCC--------------------CACGTA...........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATTGTCCATAGCTGA----AGTG-AAAA.....................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................GCGAAAAA--TTGCGAAAGC--CGC..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATTGTCCATAGCTGA----AGT...........................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................CGTTTACGTCAGAGTT-ACAAAG--G--AGT--------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GATAAGATAAGCGTGTATGGC......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCTA-AGAACTCCT-C----------------CGGCC...................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GAACCTTTT--------A---ATAATCGGGATTTGCGC....................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................T-ACAAAG--G--AGT--------------------AGCTATAATTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GTCA----GA-CA---TCGTCGTTTACGTCAGAGTT-ACAGAA--G--AGGAGGAGGAGTCAAGCAACAAAAGCTATAATTTAAT----------------------------------ATTGCTCA------------------------T---------------------------ACTGGTATAC-CC-TGCCCC--------------------CACGTAA--AACG----------AGTGCAAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------CCGATAAGATAAGCGTGTACGGCTAAAGAACTCCT-C----------------CGGCCAACGA-AATGAACCT-TT--------A---TTAATCGGGATTTGCGCGAA-ATGTGATTTTTT--TA-------CAGCCCA----AGTG-AAAAAACTAAATATAAGA-AAATACCCACACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTCA----AT-CG---GCGGCGTTTACGTCAGAGTT-ACACAG--C-------------------AACAAAAGCTATCACTTAGT----------------------------------------------------------------------------------------------GCTGGTACACCCCAAACCCC--------------------CACGTAAAAAACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCCCT-------------------------TCGATAAGATAAGCGTTCGCGGCTAAAGAACTCCT-C----------------CGGCCGACGG-AACGAACCT-TT--------A---ATAATCGGGATTTGCGAGAA-ATGTGATTTTTT--TA-------TGGCCGC----AGTG-AAAAAAA-----ATTAGA-AAATACCCACACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGTAGGCAAT-CG---GCGGCGTTTACGTCAGAGTT-ACACAGAAG--AGGAG------TCG-GCAGCAAAAGCTATAATTTAAT----------------------------------------------------------------------------------------------ACTAATAC---CCATGCCCC--------------------CACGTAAAAAACG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCT-------------------------TTGATAAGATAAGCGTGTGCGGCTAAAGAACTCCT-C----------------CGGGCGACGA-AACGAACCT-TT--------A---ATAATCGGGATTTGTGCAAA-ATGTGATTTTTT-TTA-------TAGCCCA----AGTG-GAAAAAAGA--AATAAGA-AAATACCCACACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-----------CG---GCGGCGTTTACGTCAGAGTT-ACAGAG--G--AG---------C----CAACCAAAGCAATAATTTAAT----------------------------------------------------------------------------------------------A---------------CCCC--------------------CACGTAA--AGCG----------AGTGCGAAA-A--TTGCGAAAGC--CGCGTGCCTCT-------------------------CCGATAAGATAAGCGTG--TGGCTAAAGAACTCCT-C----------------CGGCCAACGAAAACGAACCT-TT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT-TTA-------TAACTCA----AGTG-ATAAAT--------AAGAAAAGTACCCACACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTC-----GT-CG---GCGGCGTTTACGTCAGAGTT-ACAGAG--G--AG---------C----CAACAAAAGCTATAATCTAAT----------------------------------------------------------------------------------------------A---------------CCCC--------------------CACGTAA--AGCG----------AGTGCGAAAAA--TTGCGAAAGC--CGCGTGCCTCA-------------------------CCGATAAGATAAGCGCG--CGGCTAAAGAACTCCT-C----------------CGGCCAACGAAAACGAACCT-TT--------A---ATAATCGGGATTCGCGCGAA-ATGTGATTTTTTTTTA-------TAGCTTA----AGTG-ATAAAT--------AAGAAAAATACCCACACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTCG----GT--GGTGGCAGAGTTTACGTCAGAGTT-ACAGAG--G--AGGAG------C----CAGCAAAAGCTATAATTCAA-------------------------------------------------------------------------------------------------------------AACCCC--------------------CACGTAA--AGCG----------AGTGCGAAAAA--TTGCGAAAGC--CGCATGCCTCT-------------------------CCGATAAGATAAGCGCG--CGGCTAAAGAACTTCT-C----------------CGGCCAATGA-AACGAACCT-TA--------A---ATAATCGGGATTTACGCGAA-ATGTGATTT-------------------------AGTG-AAAAAAA----GAAAAGA-AAATACCCACACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTCA----GTATAGTGGTG--GTTTACGTCAGAGTT-ACAGAGCAA--AGGAG------C----------AGGCTATAATTCGAT----------------------------------------------------------------------------------------------AC-----------------------------------------------AGCG----------AGTGCGAAAAG--TTGCGAAAGC--CGCGTGCCT---------------------------CCGATAAGATAAGCG----CGGCTAAAGAACTCCTACCAACCAACCGAGCGAGCGACTGACGA-AACGAACCT-TT--------A---ATAATCGGGATTTGCGCGAA-ATGTGATTTTTT-TTATTGTC-AAAGTCAA----AGTG-AAAAA-----------GC-A-AAACCCATACAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

G---------------------TTTACGTCACAGTT-ACAAAG--CCATAG--------------------AGCTATAATTTAC-----------------------------------ACTCTTCG-------------------------------------------------------GGTCT------------CTCCCCCCTTCTTCTCGGCCCACGTAA--AACG----------AGTGCGAAAAG--TTGCGAAAGC--CGCGTGCCT---------------------------GCGATAAGATAAGAGCGT-CGGTTAAGGAACACCT-T-------------------------------------TTTTTTTTAAA---ATAATCGGGATTTGCGCGAA-AAGTGATTTTAA-AAATTGTG--------AACAAA----AAAAAAA---GAGAAAGA-ATAAACTCACACAG------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................GCGTGCCT---------------------------GCGATAAGATAAGAGC.............................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................AAAG--TTGCGAAAGC--CGCGTGCCT---------------------------GC...........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................GCCT---------------------------GCGATAAGATAAGAGCGT-CG........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA---GAGAAAGA-ATAAA.................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAA----AAAAAAA---GAGAAAGA-......................................	20	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----AAAAAAA---GAGAAAGA-A.....................................	19	8	0.13	1	0	1	0	0	0	0

droBip1

TTTG-----T-AG---TTTACGTTTACGTCAGAGTT-ACAGAG--G--CCT--------------------ACCTCTACCT----------------------------------------------------------------------------------------------------------------------CTACCGTCCCGACCCCGGCCCACGTAA--AACT----------AGTGCGAAAAG--TTGCGAAAGC--CGCGTGCCT---------------------------GCGATAAGATAAGCGTG--CGGTTACC----------------------------------------CTACCT-TT--------A---ATAATCGGGATTTGCGCGAA-ATGTGA-----------------------------------------------AAGA----AACCCACACACAGATGAATGGGAATTACTATATAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCTG-----G-CG---GCG-CGTTTACGTCATAGTA-ACACTC--G--A------------------------------------ACGGACGGAAGGGACGGATGGCCGT-TAATAAAGAC-------------------------------AAATAAATCTAAAATATAGCATTACTG--------------------CTACCCCTCTCCGC------TGGGTAA--A-TG--------CAAATGCGAAAGAACTTTCGAAAGCCCCGCGTGTGTGA-------------------------CTGATAAGATAACTGCG--CGAATAAAGAAC---------------------------------------------------------GAAAACGGGATTTATGCGAAAAAGTGATACTCT---CTT-CCCAA--ATA-----AGGGGAGAAAT-----ATAAAGA-GA------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................GATAACTGCG--CGAATAAAGAAC---------------------------------------------------------.....................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	3
..........................................C--G--A------------------------------------ACGGACGGAAGGGACGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................CGAAAGCCCCGCGTGTGTGA-------------------------CT...........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................CGGAAGGGACGGATGGCC................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................G--CGAATAAAGAAC---------------------------------------------------------GAAAACGGG............................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAAAAAGTGATACTCT---CTT-CCC..........................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GAACTTTCGAAAGCCCCGC..............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGTGATACTCT---CTT-CCC..........................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................GTA-ACACTC--G--A------------------------------------ACGGACGGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAAAGAAC---------------------------------------------------------GAAAACGGGATTT........................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGTGTGA-------------------------CTGATAAGATAAC................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................ATAGTA-ACACTC--G--A------------------------------------ACGGACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................G--A------------------------------------ACGGACGGAAGGGACGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTCT---CTT-CCCAA--ATA-----AGGGGA........................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TG--------------------CTACCCCTCTCCGC------TGG..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ATAACTGCG--CGAATAAAGAAC---------------------------------------------------------.....................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................AAGAACTTTCGAAAGCCCCGCGTGT..........................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................CTC--G--A------------------------------------ACGGACGGAAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0
................................................A------------------------------------ACGGACGGAAGGGACGGATGGC.................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................TCGAAAGCCCCGCGTGTGTGA-------------------------CTG..........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAATAAAGAAC---------------------------------------------------------GAAAACGGGA...........................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GCTG-----G-CG---GCG-CGTTTACGTCATAGTA-ACACTC--G--A------------------------------------ACGGACGGAAGGGACGGATGGCCGT-TAATAAAGAC-------------------------------AAATAAATCTAAAATATAGCATTACTG--------------------CTACCCCTCTCCGC------TGGGTAA--A-TG--------CAAATGCGAAAGAACTTTCGAAAGCCCCGCGTGTGTGA-------------------------CTGATAAGATAACTGCG--CGAATAAAGAAC---------------------------------------------------------GAAAACGGGATTTGTGCGAAAAAGTGATACTCT---CCT-CCCAA--ATA-----AGGGGAGAAAT-----ATAAAGA-GA------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................C--G--A------------------------------------ACGGACGGAAGGGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................AGCCCCGCGTGTGTGA-------------------------CTGATAAGAT...................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................ACTC--G--A------------------------------------ACGGACGGAAGGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................GAACTTTCGAAAGCCCCGC..............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................GAAGGGACGGATGGCCGT-TAATAAA......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GAAC---------------------------------------------------------GAAAACGGGATTTGTGC....................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................AAGATAACTGCG--CGAATAAAGAAC---------------------------------------------------------GAAA.................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................GGATGGCCGT-TAATAAAGAC-------------------------------AA..................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................A-ACACTC--G--A------------------------------------ACGGACGGAAGGGACGG......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCGAAAGAACTTTCGAAAGCCC.................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

TCTTG---AC-TG---GCGGCGTTTACGTCAGAGTTTACATT--------------------------------------CTCATACGGACGG--------------CGTATAATTAAGACGGCTCGGGTTTTCGGGCTCTCGGGTGAAAT-AAATAAAT-------------------GTATATAC---ACTCCTCAC--------------------TTCGTGA--AACA----------AATGCAATGAA--TTGCGAAAGC--CGCGTGTGACT------GACTGTT-----GCGTTGGCTGATAAGATAGC-----------------------C----------------CTACCGCCGA-TAAGGACCCCTG--------AACAGAAAT---------CGCGAA-TTGTGCTCTTTT---TT------------------------------------------AATAATCCCCCAT------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................GTATATAC---ACTCCTCAC--------------------TTCGT............................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
........................................................................................................................................................................................................................................................ATGAA--TTGCGAAAGC--CGCGTGTGACT------................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
.................................GTTTACATT--------------------------------------CTCATACGGACGG--------------C................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...................................TTACATT--------------------------------------CTCATACGGACGG--------------CG...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................................TACATT--------------------------------------CTCATACGGACGG--------------C................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................CCCCTG--------AACAGAAAT---------CGCGAA-TTGTG...........................................................................................	26	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................TGAA--TTGCGAAAGC--CGCGTGT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................GTGACT------GACTGTT-----GCGTTGGCT...........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................ATGCAATGAA--TTGCGAAAGC--CGC..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................T------GACTGTT-----GCGTTGGCTGAT........................................................................................................................................................................................................	20	2	1.00	2	2	0	0	0	0
.CTTG---AC-TG---GCGGCGTTTACGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................................................................TTTCGGGCTCTCGGGTGAAAT-AAATAAAT-------------------.........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
................................................................................................................................GTTTTCGGGCTCTCGGGT..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................CGCGTGTGACT------GACTGTT-----GC..................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................GC--CGCGTGTGACT------GACTG...........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
................................................................................................................AATTAAGACGGCTCGGGTTTTCG.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................AGC--CGCGTGTGACT------GACTGTT-----GCGTTG..............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
.....................................................................................ACGGACGG--------------CGTATAATTAAGAC...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGTGACT------GACTGTT-----GCGTTGGC............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...................................TTACATT--------------------------------------CTCATACGGACGG--------------C................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................C---ACTCCTCAC--------------------TTCGTGA--AACA----------..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0

droVir3

-----------TG---GCGGCGTTTACGTCAGAGTT-ACAAAC--T--GTG--------C----TAAGAAATCTTATGAGTGTAT----------------------------------------------------------------------------------------------ACGCATAC---TTATA--AA--------------------CATGTAA--TATAAATACATGCAAGTGCAAGGC-------------------------TCTAATTGCAGACCGCGTG----TGATTGATAAGCTC-----G--GCGATAAAGAAA-----------------------------------CT------AC--------A----------------GTGCAAA-TTTCAATTTTT----A-----------CAA----ATTG-AAAAAAATA--AGCGATG-AAATGTT----TGC------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................CGCGTG----TGATTGATAAGCTC-----G--GC........................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACCGCGTG----TGATTGATA.......................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AAGGC-------------------------TCTAATTGCAGACCGCGTG----TGAT............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................C--T--GTG--------C----TAAGAAATCTTATGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTG-AAAAAAATA--AGCGAT........................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGAAATCTTATGAGTGTAT----------------------------------------------------------------------------------------------ACGC.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGTCAGAGTT-ACAAAC--T--GTG--------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TG--------C----TAAGAAATCTTATGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTTTACGTCAGAGTT-ACAAAC--T--GTG--------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................C--T--GTG--------C----TAAGAAATCTTATGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTGATAAGCTC-----G--GCGATAAAG.................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................CTAATTGCAGACCGCGTG----TGATT...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTT----A-----------CAA----ATTG-AAAAAAATA--..............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................G----TGATTGATAAGCTC-----G--GC........................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACCGCGTG----TGATTGATAA......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TAAGCTC-----G--GCGATAAAGAAA-----------------------------------CT------AC--------.........................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AAGGC-------------------------TCTAATTGCAGACCGCGTG----TGATTGATAAGCTC-----G--GC........................................................................................................................................................................................	41	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CT------AC--------A----------------GTGCAAA-TTTCAATT........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................G--------C----TAAGAAATCTTATGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AT----------------------------------------------------------------------------------------------ACGCATAC---TTATA--AA--------------------CATGTAA--T.......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AA-----------------------------------CT------AC--------A----------------GTGCAAA-TTTCA...........................................................................................	19	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTT----AT-TT---AAGAAATCTAAAGCTAAAGC-AAAGCA--G--AGT------------------------ATA-TATTAT----------------------------------------------------------------------------------------------ACGCATAC---T--TATCTA--------------------CTTGTAA--TATA----------AATGCAGACAA--CT-----AAC--TGTGTTTCTCT-------------------------ACAATTGCACA-CCGTGTACGATTGATAAGATC-G-C----------------CGATAAAAA----TG--------------------AAAAACGAGCATT--ACAAA-CTGAAATATCTT---CG------AATTTCT----AATA-AAACA------GCCAACG-AAATGTT----TGC------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................T------------------------ATA-TATTAT----------------------------------------------------------------------------------------------ACGCATAC---T--T..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TACGATTGATAAGATC-G-C----------------CGA.....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTT---CG------AATTTCT----AATA-.........................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GATTGATAAGATC-G-C----------------CGAT....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

-4.0	-3.8	-3.7	-3.6

dsi_14736

2r:16006407-16006556 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads