ID:

dsi_14733

 Coordinate:

3r:17373487-17373636 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.5 -5.1 -4.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTGGTTGCGCCCCCTTTTTGGTTTCTAGGTGGACAGGCGAAAACGCTCAGGTACGTGTTTTATTTTTCGGAGAGAAACAAGATTGATTACCCATACATTACTTATTCTTTGTTTTACTACAACATAATAGTTAATATTTGTATAAAAAAAAAAACGATGATGGCGAGAGAGGAAAACCAGCTAAAAAATTGATATATTCATAATATAGAATTGTTTTAAATGGTTTGAGAGCGAAAAATATTGAGGGTTT
*****************************************************************...........(((((((((((((............((((...((((......)))).)))))))))))).))))).............************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 O001
Testis
.........................................................................................................................................TTGTATAAAAAAAAAAA................................................................................................ 17 0 1 10.00 10 2 4 0 2 0 1 1 0 0 0
.................................................................TTCGGAGAGAAACAAGATTGATTACCCA............................................................................................................................................................. 28 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................TTGTATAAAAAAAAAA................................................................................................. 16 0 3 2.00 6 1 2 0 2 0 0 1 0 0 0
.........................TAGGTGGACAGGCGAAAACGCTCA......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................TTTTCGGAGAGAAACAAGATTGATT.................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTTTAAATGGTTTGAGAGC.................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................TAGTGAATAATTGTATAAAAAAAAA.................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TATAAAAAAAAAACGATGATGGCGAGA.................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTTGAGAGCGAAAAATATTGAGGGT.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................CTAGGTGGACAGGCGAAAACGCTCAG........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................ATAGAATTGTTTTAAATGGT.......................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................TAAAAAAAAAAACGATGATGGCGAGA.................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGTTTGAGAGCGAAAAATATTGAGGGT.. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAAAAAAACGATGATGGCGA.................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..............................................................TTTTTCGGAGAGAAACAAGATTGATTAC................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................TAGTAAATAATTGTATAAAAAAAAAAA................................................................................................ 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TAATAGTTAATATTTGTATAAAAAA..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGTATAAAAAAAAACGATGATGGCGAGA.................................................................................. 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTGTATAAAAAAAAA.................................................................................................. 15 0 10 0.40 4 1 3 0 0 0 0 0 0 0 0
......................................GAAAACGCTCAGGTACGG.................................................................................................................................................................................................. 18 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TGATGGCGAGAAAGGAAA........................................................................... 18 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................TTGTATAAAAAAAAAAAA............................................................................................... 18 1 20 0.25 5 1 4 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCGAAAACTATTGAGG.... 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................ACATAGTAGTTAATA.................................................................................................................. 15 1 16 0.13 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................TAGTAAAACATAGTAGTTAA.................................................................................................................... 20 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.......................TCTAGGTGGAGCGGCGA.................................................................................................................................................................................................................. 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0
...........CCCTTTTTGGTTAATAGGTA........................................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
......................................................GTGCGTTATTTTTCGGA................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTGTATAAAAAAAAAGA................................................................................................ 17 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGATAGCTGTATAAAAAAAAA.................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATAGAATTGTTTAAAA.............................. 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................GCCCAGATGCGTGTTTTA............................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TACGTTGATGGCGAGA.................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TAGTATTGTTTTAAA.............................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CACCAACGCGGGGGAAAAACCAAAGATCCACCTGTCCGCTTTTGCGAGTCCATGCACAAAATAAAAAGCCTCTCTTTGTTCTAACTAATGGGTATGTAATGAATAAGAAACAAAATGATGTTGTATTATCAATTATAAACATATTTTTTTTTTTGCTACTACCGCTCTCTCCTTTTGGTCGATTTTTTAACTATATAAGTATTATATCTTAACAAAATTTACCAAACTCTCGCTTTTTATAACTCCCAAA
************************************************************************************************...........(((((((((((((............((((...((((......)))).)))))))))))).))))).............***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 M024
male body
.............................................................TCAAAAGCCTCTCTTGGT........................................................................................................................................................................... 18 2 6 2.50 15 3 10 1 0 0 1 0
...............................................................AAAAGCCTCTCTTGGT........................................................................................................................................................................... 16 1 3 1.00 3 1 1 1 0 0 0 0
...............................................................AAAAGCCTCTCTTTG............................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................CAAAATGTACCAGACTCT.................... 18 2 2 0.50 1 0 0 0 1 0 0 0
................................................................AAAGCCTCTCTTGGT........................................................................................................................................................................... 15 1 4 0.50 2 1 1 0 0 0 0 0
..................................................................................................................................................................................ACGATTTTGTAACTATAAAAGTAT................................................ 24 3 2 0.50 1 0 1 0 0 0 0 0
.................................................................AATCCTCTCTTTTTTCTGACT.................................................................................................................................................................... 21 3 5 0.40 2 0 1 1 0 0 0 0
..........................................................................................................................................ACATATTTTTTTATCTGCTACTT......................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................................................TTTTTTTATTGCTACTAAGGCT.................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
...................................................................GCCTCTCTTTTTTCTGACT.................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0
............................................................ATCAAAAGCCTCTCTT.............................................................................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AAATTTACCAGACTCT.................... 16 1 6 0.17 1 0 0 0 1 0 0 0
..........................................................................................GGTATGTATTGAAGAAG............................................................................................................................................... 17 2 14 0.14 2 0 0 2 0 0 0 0
.................................................................AAGCCTCTCTTTGTC.......................................................................................................................................................................... 15 1 9 0.11 1 1 0 0 0 0 0 0
..........................................................................................................................................................................CCTTTTGGTCAGTTTTTAAAC........................................................... 21 3 11 0.09 1 0 0 0 0 0 0 1
...................................................................GCCTCTCTCTATTCTGACT.................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0
.............................................................TCAAAAGCCTCTCTT.............................................................................................................................................................................. 15 1 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................CTCCTCTTGGTCGAT................................................................... 15 1 15 0.07 1 0 0 0 1 0 0 0
..............................................................ATAAAGCCTCTCTTGGT........................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 1 0 0 0
................................................................AAAGCCTCTCTTTGTCG......................................................................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0
...................................................................TCCTCTCTCTGTTCTGACT.................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/23/2015 at 05:23 PM