ID:

dsi_14724

 Coordinate:

3l:16451036-16451185 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTGCCACACCGACGATTTCGCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGTGAGTGGTTATATATAGTAAAAATAGAAGGTATAGTTGTAGATATAGGAAAGATATGGCCAAAGAGCAGGGCCGATCGATTTTGGCTTAAACTTCCTGTGTTTCCATTAATCGACCCCACAAATGTGTTACGTCGCCGTTCAGGCGGGAAAACACATAAACAAATTGGCCTTTTTGCCTTAAAGTCTTGCCTTGTTTGT
**************************************************....((((((((.....))))........(((.....((.(((((((((((......((((((((....((.....))..)))))))).....))))))))))).)).......)))))))............(((((.....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................AAGTCGCCGTTCAGGCGGA................................................... 19 2 1 1.00 1 0 1 0 0 0
................................GAGGAGTTCGCCGAGAAGG....................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
........................................................................................GTAGATATAGGAAGGA.................................................................................................................................................. 16 1 6 0.50 3 2 1 0 0 0
.............................................................................................................................................................................................................CAAAAACAAATTGGCCTGTT......................... 20 2 2 0.50 1 0 0 1 0 0
........................................................................................................................................................................................CGCCTTTCACGCGGGAAAA............................................... 19 2 2 0.50 1 0 0 0 1 0
...........ACGATGTTGCGTCGTCC.............................................................................................................................................................................................................................. 17 2 4 0.50 2 2 0 0 0 0
............CGATGTTGCGTCGTCCG............................................................................................................................................................................................................................. 17 2 5 0.40 2 2 0 0 0 0
...........ACGATGTTGCGTCGTCCG............................................................................................................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0
.......................................................................................CGTAGATATAGGAAGGA.................................................................................................................................................. 17 2 12 0.25 3 1 2 0 0 0
.............GATGTTGCGTCGTCCGAGCG......................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................GCCCTTCACGCGGGAAAA............................................... 18 2 5 0.20 1 0 0 0 1 0
................................................................ATAGTAACCATAGAAGG......................................................................................................................................................................... 17 2 12 0.17 2 0 2 0 0 0
...........ACGATGTTGCGTCGTCCGA............................................................................................................................................................................................................................ 19 3 12 0.17 2 2 0 0 0 0
.................TCCCGTCGTCCGCGCCA........................................................................................................................................................................................................................ 17 2 9 0.11 1 1 0 0 0 0
............CGATGTTGCGTCGTCC.............................................................................................................................................................................................................................. 16 2 20 0.10 2 2 0 0 0 0
........................................................................................GTAGATATAGGAAGG................................................................................................................................................... 15 1 11 0.09 1 0 0 0 1 0
.........................................................................................................................................................................................GCCCTTCACGCGGGAAA................................................ 17 2 12 0.08 1 0 0 0 1 0
..................CGCGTCGTGCGTCCGAGGA..................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1
.........................................................................................TAGATATAGGAAGGA.................................................................................................................................................. 15 1 18 0.06 1 0 1 0 0 0
.......................................................................................................................................................................................CCGCCTTTCACGCGGGAAAA............................................... 20 3 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................GCCTTTCACGCGGGAAA................................................ 17 2 20 0.05 1 0 1 0 0 0
..................................GGAGTTCGCCGAGGA......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

CACGGTGTGGCTGCTAAAGCGCAGCAGGCGCGCTCCTCAAGCGGCTCTTCCACTCACCAATATATATCATTTTTATCTTCCATATCAACATCTATATCCTTTCTATACCGGTTTCTCGTCCCGGCTAGCTAAAACCGAATTTGAAGGACACAAAGGTAATTAGCTGGGGTGTTTACACAATGCAGCGGCAAGTCCGCCCTTTTGTGTATTTGTTTAACCGGAAAAACGGAATTTCAGAACGGAACAAACA
**************************************************....((((((((.....))))........(((.....((.(((((((((((......((((((((....((.....))..)))))))).....))))))))))).)).......)))))))............(((((.....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...................................................................................................................................................................................ATGCAACGGCAAGTC........................................................ 15 1 4 0.25 1 1 0 0 0
..........................................................................................................................................................................................................................CGGGAAAGCGGAACTTCAGA............ 20 3 5 0.20 1 0 1 0 0
.........GCTTTTAAAGCGCAGCA................................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 1 0
...................................................................................AACAACTTCTAGATCCTTTC................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0
.............CTAAAGCGGTGCAGGCG............................................................................................................................................................................................................................ 17 2 18 0.06 1 1 0 0 0
..............................................................................................................................................................................................................TTTTTGTTTAACCGGAGA.......................... 18 2 20 0.05 1 0 0 0 1
..............................................CGTCCACTCAACAATGTAT......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 04:56 AM