dsi_14702

exon [2r_4696567_4696743_-]; CDS [2r_4696567_4696726_-]; exon [2r_4696031_4696416_-]; CDS [2r_4696031_4696416_-]; intron [2r_4696417_4696566_-]

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCCGCCACGACAGCAACAACTGGCGACAGCGACAACGGCAACACCAATCGTAAGAATCCTCCACTTTGCTACACCGAAACACTTGAAGGGCACACAAATCGCACACCTAGCTGATAACCCAGTTTAATTAGTTCATTATGTGTATACGACTTTTGACCACGACTCACGCGTACCTTGTTTTCCTTATCTCTGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGCAACAGCAACAACCACCAGCAGC ************************************************(((((............((((....(((.....)))...))))........(((((...(((((((...........))))))).....))))).((((.....(((.......)))..))))....................)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	O001 Testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
.......................................................................................................................................ATCATTTGTATACGACTT.................................................................................................	18	2	11	3.09	34	15	16	1	0	2	0
.........................................................................................................................................................................................................CAACTCCAGCGTGATTGCAGC............................	21	0	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................CATCATTTGTATACGACT..................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................................CGTGATTGCAGGTACGG.......................	17	2	8	0.13	1	0	0	0	1	0	0
.............................................................................................................................................................................................................................CTCCAGCAACAGGAACGACCA........	21	3	8	0.13	1	0	0	0	1	0	0
...............................................................................................CATATCGCACACCGTGCTG........................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

TAGGCGGTGCTGTCGTTGTTGACCGCTGTCGCTGTTGCCGTTGTGGTTAGCATTCTTAGGAGGTGAAACGATGTGGCTTTGTGAACTTCCCGTGTGTTTAGCGTGTGGATCGACTATTGGGTCAAATTAATCAAGTAATACACATATGCTGAAAACTGGTGCTGAGTGCGCATGGAACAAAAGGAATAGAGACGAATGTCTGTTGAGGTCGCACTAACGTCGATGTCGTTGTCGTTGTTGGTGGTCGTCG ************************************************(((((............((((....(((.....)))...))))........(((((...(((((((...........))))))).....))))).((((.....(((.......)))..))))....................)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	M024 male body
.............................................................GGTGAAACGATGTTGC.............................................................................................................................................................................	16	1	5	4.00	20	16	0	0	2	1	1	0	0
.....................................................................................................................................................................................................................CTAACGTCGATGTCTTTGTTAT...............	22	3	2	1.50	3	3	0	0	0	0	0	0	0
...........................................................................................................................................................................................TATGACGAATGTCTGTTGAGGT.........................................	22	3	1	1.00	1	0	0	1	0	0	0	0	0
............................TCGCTGTTGCAGTTGTGG............................................................................................................................................................................................................	18	1	1	1.00	1	0	1	0	0	0	0	0	0
.............................................................GGTGAAACGATGTTGCG............................................................................................................................................................................	17	2	16	0.38	6	4	0	0	1	1	0	0	0
...................................................................................................AGCGTGTGGATCGCC........................................................................................................................................	15	1	3	0.33	1	0	1	0	0	0	0	0	0
.............................CGCTGTTGCAGTTGTGGT...........................................................................................................................................................................................................	18	1	4	0.25	1	0	1	0	0	0	0	0	0
................................................................................................TTGAGCGTGTGGATCG..........................................................................................................................................	16	1	4	0.25	1	0	1	0	0	0	0	0	0
..................................................................AACGATGTGGCTTCGTG.......................................................................................................................................................................	17	1	9	0.22	2	0	2	0	0	0	0	0	0
......................................................................ATGTGGGTTTGTGAGCTT..................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	0	0	1	0
.....................................................................GATGTGGCTTCGTGAA.....................................................................................................................................................................	16	1	10	0.10	1	0	1	0	0	0	0	0	0
........................................................................................................................GTCACAATAAACAAGTAATAC.............................................................................................................	21	3	11	0.09	1	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................TGAGATCGCACTAAAGGC.............................	18	3	20	0.05	1	0	0	0	0	0	1	0	0
.................................................................................................TGAGCGTGTGGATCG..........................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................CCAATGTCCGTTGAGGTTG.......................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0
...................................................................................................AGCGTGTGGATCGCCG.......................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:4696367-4696616 -	dsi_14702	ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTACAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTCAC---GCGTAC----CTTGTTTTCC----TTATCTC---TGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAGCAACAA---CCACCAG-----CAGC
droSec2	scaffold_1:1510181-1510430 -		ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTACAC-------C---------------GAAAC-----------ACTTGAAGGCC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTCAC---GCGTAC----CTTGTTTTCC----TTATCTC---TGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAGCAACAA---CCACCAG-----CAGC
dm3	chr2R:3872907-3873156 -		ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CCCCA--------------CTTTG-------CTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTCAC---GCGTAC----CTTGTTTTCC----TTATCTC---TGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CGGCAACAA---CCACCAG-----CAGC
droEre2	scaffold_4929:18755256-18755505 +		ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TCCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTAAC---ACGTAC----ATTGTTTGTG----TTATCTG---TGCTTTTAGACAACTCCAGCGTGATTGCAGCTACAGC------------------TA-CAGCAACAA---CCACCAC-----CAGC
droYak3	2L:16529184-16529437 -		ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTAAC---ACGTACATACATTGTTTGTG----TTATCTG---TGCTTTCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------TA-CAGCAACAA---CCACCAC-----CAGC
droEug1	scf7180000409474:2709599-2709848 -		ATCGGCC------ACGACAGCAACAACTAGCGAGAGCGA------CAA------CGCCAAC------A-CCAATCGTAAGAATC-CACAA--------------CTTTG-------CTTAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACTCAATTTAATTA-----G---------TTTATAATG------------------------------------------------TGTATG-----------------------------------------------------------TGAC-TTTTGA----CCATAACTAAT-AATCGTTT----ATTGTTTTTGTTTGTTATCTG---TGATTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAAC---------TAT-----TACC
droBia1	scf7180000302291:1714430-1714684 -		ATTGGCC------ACGACAGCAACAACTAGCGACGGCGA------CCA------CAGCAACACCGCTA-CCAATCGTAAGAATC-CACAA--------------CTTTG-------TTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA--------------A---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TCTGTAATG------------------------------------------------TGTG-------------------------------------------------------------TGAC-TTTTGA----CCGTGACTAAC---TGGTAT----ACTATTTTCG----TTATCTCT-GTGCTTGCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACCA---CAACAAC-----TGGC
droTak1	scf7180000415088:259779-260031 +		ATCGGCC------ACGACAGCAACAACTAGCGACAGCGA---CAACAA------CGGCAAC------A-CCAATCGTAAGAATC-CACAA--------------CTTTG-------TTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTATAATTA-----G---------TCTATAATG------------------------------------------------TGTATT-----------------------------------------------------------TGAC-TTTTGA----CCATGACTAAC---TAGTAT----ATTATTTTTG----TTATCTC---TGCTTGCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACAG---CAACAAC-----TGGC
droEle1	scf7180000491258:165006-165280 +		ATCGGCC------ACGACAGCAGCAACTAGCGACAGCAA------CAGCGACAACAGCAAC------A-TCAATCGTAAGAAAC-CACAA--------------CTTTG-------CTAAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCGAATTTAATTA-----G---------TCTATAATG------------------------------------------------TGTGTA-----------------------------------------------------------TGAC-TTTT--CCGATCGCGATTAAC---GTGTAT----ATTGCTTA-T----TAATCTG---TGATTACAGACAACTCCAGCGTGATTGCAGCTACAGCAACACCATCAACAACAGCAA-CAACAACAA---CAACAAC-----CAGC
droRho1	scf7180000774573:119944-120181 -		-CCGGCC------ACGACAGCAGCAACTAGCGACAGCGA------CAA------CGACAAC------A-GCAATCGTAAGAATC-CACAT--------------CTTTG-------TTAAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCGA-------TA-----A---------TCTATAATG------------------------------------------------AGTATA-----------------------------------------------------------TGAC-TTTCGA----CCGCGACTAAC---TTGCAT----ATTACTTT-T----TAATCTC---TGATTTTAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AT-CAACAACAA---C---TAC-----CAGC
droFic1	scf7180000453215:338344-338591 +		ATCGGCC------ACGACAGCAACAACTAGCGCCAGCGA------CAA------CAACAAA------A-CGAATCGTAAGAATC-CACAA--------------CTTTG-------TTAAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAATTTAATTA-----G---------TCTATAATG------------------------------------------------TGTATA-----------------------------------------------------------TGAC-TTTTAG----CTGTGCCTAAC---CTGACT----TTCGTTT--C----TAATCTG---TGATTGCAGACAGCTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACGA---CAACAAT-----TAGA
droKik1	scf7180000302471:495339-495609 -		CACCGAC------GCAGCAGAAGCAGCTAGCGACAGCGA------CAG------CGACCCC------A-GCAATCGTAAGAATCCCACAA--------------CTTTG-------TTAAAAAGCAACGCACACAC----------ACACACTCGAAACACACTTGAAGGGC-ACACAAA-----------AA---------TCGCACACACCTTAGCTGATAACCCAATTGAATTA-----GAC-------TCTATAGCT------------------------------------------------CGCACT-----------------------------------------------------------TGAG-ATTAAC----CTGTGATTAAC---TTGCGT----A-------------TTAT-TG---TGATTACAGACAGCTCCAGCGTGATTGCAGCTACAGC------------------CA-CAACAACAA---CAACCAC-----AACC
droAna3	scaffold_13266:16196601-16196866 -		ATCGACCCTCACCTCAGCAACAACATCTAAAGGGAGCAA------CAA------CAACAGT---CCCA-ACAATCGTAAGAATCTCACAA--------------CTTTG-------TTAATC------GC---------------GAAACACTTGAAAC--TTTTGAAGGGC-AAACA-------------AA---------TCGCACAT---CTCGCTGATAACACAACT-AATTATATTAAGCTCTTGACTCGAT------------------------------------------------------TATA-----------------------------------------------------------C--A-TTTTCA----ACATGACTAAT---GT---T----AT-GATTTGA----TAATCTA---TGATTCCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACAA---CAACTG----------
droBip1	scf7180000396567:676871-677132 -		ATCGACC------AT---AGGAACACCTAGCA---GCGACAACAACGA------CAGCCCC------A-ACAATCGTAAGAATCTCACAA--------------CTTTG-------TTAATC------GC---------------GAAACACTTGAAAC--TTTTGAAGGGC-AAACA-------------AA---------TCGCACAT---CTCGCTGATAACACAACT-AATTATATTAAGCTCTC-----------G------------------------------------------------ACTATA-----------------------------------------------------------TTACGTTTGAA----TAATGACTAAT---GCTGAT----AT-------C----TCTTCTA---TGTTTGCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACAA---CAACAACAACAGCGGC
dp5	3:5502968-5503214 -		-----CC------ACCAGAGCAGCCAGTGA-AACAGAAA------CTA------CAACATC------GATTAATCGTAAGAATCTAAACA--------------CTTTA-------TGAATC-------C----------AT-AAGCAGC-----------ACTTGAAGGGC-CCCCCAAACACAAACACAA-----------AGCACAT---TTAGCTGATAGTCGAACC-GATGC-------------------ACTAGTAATCTCTAAAATAATCAATATTGGCTGATTGA-------------TT------------------------------------------------------------------------------------GATT----------------------------------------GATTTCCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AC-CACCAGTCACAGCCACAAG-----CAGC
droPer2	scaffold_2:5702254-5702501 -		ATCCACC------ACAGCAGC---CAGTGA-AACAGAAA------CTA------CAACACC------GATTAATCGTAAGAATCTGAACA--------------CTTTA-------TGAATC-------C----------AT-AAGCAGC-----------ACTTGAAGGGC-CCCCA-AACACAAACACAA-----------AGCACAT---TTAGCTGATAGTCGAACC-GATGC-------------------ACTAGTAATCTCTATAATAATCAATATTTGCTGATTGA-------------TT------------------------------------------------------------------------------------GATT----------------------------------------GATTTCCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AC-CACCAGTCACAGCCACAAG-----CAGC
droWil2	scf2_1100000004511:5972812-5973066 +		AGCAGCA------ACAACAGCAGCAGC-AGCAACAACAA------CAACAA---CAGCAGC------C-ACAGCCACAACAGTT----------------------TGGCTTCCAGTTGAAGAGCAATGTC-GCTGGCCAGT------------------------------------------------------------------------------------CAACGACATCG-----C---------CGCA-------GAATGCAAAGTCAGCAATAATTGCTAATCAAACAGCGCTAGTTG--AGCCATACACAAGCGGAGTTGGAGCCTTTG----------------------------GC--------------------CAACAGCCGCC---G-----------------------------------CC-GC-CACATCACCAGCAACATC--AGCAGCAAC---------------AACAA-CAGCAACAA---C-ACCAG-----CAGC
droVir3	scaffold_12875:14767104-14767358 -	dvi_6962	AACAACA------ACAACA-CG---ACA---AACAACAA------CAA------CAACAAT------A-ACAATAGTAAGAATC-TTTCGCAGCGTACTATTTGTTTT--------GTAAAC-------C---------AATT----AAA-----------GCTTAACATGG-ACATG-------------GGCTCAATTTAACACGCAC---TTAACAATGAACTT---------------------------------G------------------------------------------------AGCTTTGTACGA-----------------------------------------------TTTATT-----------CTAATTGGGATTCGTTTGTCTCTCTC--TCTCTTTC-------TGTCTCTCTCGCACGCAGACAACTCCAGCGTAATTGCGGCTACAGC------------------AA-CAACATCG-------TCAG-----CGAT
droMoj3	scaffold_6496:10239414-10239657 -		-----------------------CAACTAACAACAACAA---CAGCAA------CAACAAC------A-ACAATAGTAAGCAC-----CA--------------TTTTG-------TTAGCC-------A----------ATT--AAAGC-----------TTC--ACTTGC-GTACA-------------C------------------------GTCCACAACCTAACACAAGCA-----C---------TTCAACTTG------------------------------------------------AGCTTT-----------------------------------------------------------TCAA-CTTTGA----TTA--ACTGTT-TAACACACAC--TCTCTCTCTG--TCTCCCTCT---CGCACACAGACAACTCCAGTGTTATTGCGGCTACAGCAGCAACGTCGGCAACGGCAAAGGGCAGCGA---CCAACAA-----CAAC
droGri2	scaffold_15074:4968609-4968856 -		AGCAGTC------GCAGCAGCAGCAACTGGC-ACAACAG------CAA------CAACAAC------G-TCCTCCGGGT--ATC-------AGCGTGCCG----CCCCC-------CCTGGC-------C---------AAC---AAATT-----------GGTGGCGGGGCGGCACG-------------AG---------CCACACGC---A--GCA----GCGCCGCT-----G------------------------------------------------------------------------------------------------CCGCTGCTGTTGGCATTGTTGATTATAGCGTGCTGCCGGCA-----------GCAGCCGCCACTCACAT--GACG-----------------------CCC---TACGTACC-ACAGCAACAACAGCACT-----CGCACC------------CGCAACAA-CAACAACCA---CAG-CAG-----CAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTACAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTCAC---GCGTAC----CTTGTTTTCC----TTATCTC---TGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAGCAACAA---CCACCAG-----CAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCAGCGTGATTGCAGC.......................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTACAC-------C---------------GAAAC-----------ACTTGAAGGCC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTCAC---GCGTAC----CTTGTTTTCC----TTATCTC---TGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAGCAACAA---CCACCAG-----CAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCAGCGTGATTGCAGCTACAGC------------------...............................	27	1	1.00	1	0	0	1	0

dm3

ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CCCCA--------------CTTTG-------CTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTCAC---GCGTAC----CTTGTTTTCC----TTATCTC---TGCTTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CGGCAACAA---CCACCAG-----CAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTACAGC------------------AA-CGGCAACAA---C...............	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCGTGATTGCAGCTACAGC------------------AA-C...........................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCGTGATTGCAGCTACAGC------------------A..............................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCC------ACGACAGCAACAACTGGCGACAGCGA------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGATTGCAGCTACAGC------------------AA-CGGCAA......................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAGCGTGATTGCAGCTACA...................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGC------------------AA-CGGCAACAA---CCACCAG-----CA..	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAGCGTGATTGCAGCTACAG..................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGATTGCAGCTACAGC------------------AA-CGGCAAC.....................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACAC..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCAGCGTGATTGCAGCTACAGC------------------...............................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCGTGATTGCAGCTA.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTCCAGCGTGATTG...........................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGTGATTGCAGCT......................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGTGATTGCAGCTACAGC------------------AA-C...........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TCCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTAAC---ACGTAC----ATTGTTTGTG----TTATCTG---TGCTTTTAGACAACTCCAGCGTGATTGCAGCTACAGC------------------TA-CAGCAACAA---CCACCAC-----CAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................CGACAGCGA------CAA------CGGCAAC------A-CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...............................GACAGCGA------CAA------CGGCAAC------A-CCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCGTGATTGCAGCTAC....................................................	22	1	1.00	1	0	1	0	0	0	0	0
................................ACAGCGA------CAA------CGGCAAC------A-CCAATCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAGCGTGATTGCA.........................................................	18	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA---CCACCAC-----CAGC	19	1	1.00	1	0	1	0	0	0	0	0

droYak3

ATCCGCC------ACGACAGCAACAACTGGCGACAGCGA------CAA------CGGCAAC------A-CCAATCGTAAGAATC-CTCCA--------------CTTTG-------CTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TTCATTATG------------------------------------------------TGTATA-----------------------------------------------------------CGAC-TTTTGA----CCACGACTAAC---ACGTACATACATTGTTTGTG----TTATCTG---TGCTTTCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------TA-CAGCAACAA---CCACCAC-----CAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................ACAACTGGCGACAGCGA------CAA------CGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................AGCAACAACTGGCGACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................GGCGACAGCGA------CAA------CGGCAAC------A-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....GCC------ACGACAGCAACAACTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAGCGTGATTGCAGCTAC....................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA---CCACCAC-----CAGC	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGTGATTGCAGCTACAG..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCAGCGTGATTGCA.........................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGCAGCTACAGC------------------TA-CAGC........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGTGATTGCAGCTACA...................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTACAGC------------------TA-CAGCAACAA---CC..............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGTGATTGCAGCTACAGC------------------T..............................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCGTGATTGCAGC.......................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............GACAGCAACAACTGGCGACAGCGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTG----TTATCTG---TGCTTTCA..............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGTGATTGCAGCTACAGC------------------TA-............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

ATCGGCC------ACGACAGCAACAACTAGCGAGAGCGA------CAA------CGCCAAC------A-CCAATCGTAAGAATC-CACAA--------------CTTTG-------CTTAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACTCAATTTAATTA-----G---------TTTATAATG------------------------------------------------TGTATG-----------------------------------------------------------TGAC-TTTTGA----CCATAACTAAT-AATCGTTT----ATTGTTTTTGTTTGTTATCTG---TGATTACAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAAC---------TAT-----TACC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTGGCC------ACGACAGCAACAACTAGCGACGGCGA------CCA------CAGCAACACCGCTA-CCAATCGTAAGAATC-CACAA--------------CTTTG-------TTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA--------------A---------TCGCACAC---CTAGCTGATAACCCAGTTTAATTA-----G---------TCTGTAATG------------------------------------------------TGTG-------------------------------------------------------------TGAC-TTTTGA----CCGTGACTAAC---TGGTAT----ACTATTTTCG----TTATCTCT-GTGCTTGCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACCA---CAACAAC-----TGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATCGGCC------ACGACAGCAACAACTAGCGACAGCGA---CAACAA------CGGCAAC------A-CCAATCGTAAGAATC-CACAA--------------CTTTG-------TTAAAC-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAGTATAATTA-----G---------TCTATAATG------------------------------------------------TGTATT-----------------------------------------------------------TGAC-TTTTGA----CCATGACTAAC---TAGTAT----ATTATTTTTG----TTATCTC---TGCTTGCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACAG---CAACAAC-----TGGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATCGGCC------ACGACAGCAGCAACTAGCGACAGCAA------CAGCGACAACAGCAAC------A-TCAATCGTAAGAAAC-CACAA--------------CTTTG-------CTAAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCGAATTTAATTA-----G---------TCTATAATG------------------------------------------------TGTGTA-----------------------------------------------------------TGAC-TTTT--CCGATCGCGATTAAC---GTGTAT----ATTGCTTA-T----TAATCTG---TGATTACAGACAACTCCAGCGTGATTGCAGCTACAGCAACACCATCAACAACAGCAA-CAACAACAA---CAACAAC-----CAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-CCGGCC------ACGACAGCAGCAACTAGCGACAGCGA------CAA------CGACAAC------A-GCAATCGTAAGAATC-CACAT--------------CTTTG-------TTAAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCGA-------TA-----A---------TCTATAATG------------------------------------------------AGTATA-----------------------------------------------------------TGAC-TTTCGA----CCGCGACTAAC---TTGCAT----ATTACTTT-T----TAATCTC---TGATTTTAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AT-CAACAACAA---C---TAC-----CAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATCGGCC------ACGACAGCAACAACTAGCGCCAGCGA------CAA------CAACAAA------A-CGAATCGTAAGAATC-CACAA--------------CTTTG-------TTAAAT-------C---------------GAAAC-----------ACTTGAAGGGC-ACACA-------------AA---------TCGCACAC---CTAGCTGATAACCCAATTTAATTA-----G---------TCTATAATG------------------------------------------------TGTATA-----------------------------------------------------------TGAC-TTTTAG----CTGTGCCTAAC---CTGACT----TTCGTTT--C----TAATCTG---TGATTGCAGACAGCTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACGA---CAACAAT-----TAGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACCGAC------GCAGCAGAAGCAGCTAGCGACAGCGA------CAG------CGACCCC------A-GCAATCGTAAGAATCCCACAA--------------CTTTG-------TTAAAAAGCAACGCACACAC----------ACACACTCGAAACACACTTGAAGGGC-ACACAAA-----------AA---------TCGCACACACCTTAGCTGATAACCCAATTGAATTA-----GAC-------TCTATAGCT------------------------------------------------CGCACT-----------------------------------------------------------TGAG-ATTAAC----CTGTGATTAAC---TTGCGT----A-------------TTAT-TG---TGATTACAGACAGCTCCAGCGTGATTGCAGCTACAGC------------------CA-CAACAACAA---CAACCAC-----AACC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATCGACCCTCACCTCAGCAACAACATCTAAAGGGAGCAA------CAA------CAACAGT---CCCA-ACAATCGTAAGAATCTCACAA--------------CTTTG-------TTAATC------GC---------------GAAACACTTGAAAC--TTTTGAAGGGC-AAACA-------------AA---------TCGCACAT---CTCGCTGATAACACAACT-AATTATATTAAGCTCTTGACTCGAT------------------------------------------------------TATA-----------------------------------------------------------C--A-TTTTCA----ACATGACTAAT---GT---T----AT-GATTTGA----TAATCTA---TGATTCCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACAA---CAACTG----------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................ACATCTAAAGGGAGCAA------CAA------CAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCAGCTACAGC------------------AA-CAACAACAA---C...............	27	1	1.00	1	0	1	0	0	0	0
.........CACCTCAGCAACAACATCTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACAGC------------------AA-CAACAACAA---CA..............	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGTGATTGCAGCTAC....................................................	21	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGC------------------AA-CAACAACAA---CAACT...........	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC------------------AA-CAACAACAA---CAAC............	20	20	0.05	1	0	1	0	0	0	0

droBip1

ATCGACC------AT---AGGAACACCTAGCA---GCGACAACAACGA------CAGCCCC------A-ACAATCGTAAGAATCTCACAA--------------CTTTG-------TTAATC------GC---------------GAAACACTTGAAAC--TTTTGAAGGGC-AAACA-------------AA---------TCGCACAT---CTCGCTGATAACACAACT-AATTATATTAAGCTCTC-----------G------------------------------------------------ACTATA-----------------------------------------------------------TTACGTTTGAA----TAATGACTAAT---GCTGAT----AT-------C----TCTTCTA---TGTTTGCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AA-CAACAACAA---CAACAACAACAGCGGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

-----CC------ACCAGAGCAGCCAGTGA-AACAGAAA------CTA------CAACATC------GATTAATCGTAAGAATCTAAACA--------------CTTTA-------TGAATC-------C----------AT-AAGCAGC-----------ACTTGAAGGGC-CCCCCAAACACAAACACAA-----------AGCACAT---TTAGCTGATAGTCGAACC-GATGC-------------------ACTAGTAATCTCTAAAATAATCAATATTGGCTGATTGA-------------TT------------------------------------------------------------------------------------GATT----------------------------------------GATTTCCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AC-CACCAGTCACAGCCACAAG-----CAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................CAGTGA-AACAGAAA------CTA------CAACATC------GATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAGCGTGATTGCAG........................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................TGA-AACAGAAA------CTA------CAACATC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGTGATTGCAGCT......................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................AGAGCAGCCAGTGA-AACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................AACAGAAA------CTA------CAACATC------GATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................GA-AACAGAAA------CTA------CAACATC------GATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

ATCCACC------ACAGCAGC---CAGTGA-AACAGAAA------CTA------CAACACC------GATTAATCGTAAGAATCTGAACA--------------CTTTA-------TGAATC-------C----------AT-AAGCAGC-----------ACTTGAAGGGC-CCCCA-AACACAAACACAA-----------AGCACAT---TTAGCTGATAGTCGAACC-GATGC-------------------ACTAGTAATCTCTATAATAATCAATATTTGCTGATTGA-------------TT------------------------------------------------------------------------------------GATT----------------------------------------GATTTCCAGACAACTCCAGCGTGATTGCAGCTACAGC------------------AC-CACCAGTCACAGCCACAAG-----CAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............ACAGCAGC---CAGTGA-AACAGAAA------CT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCGTGATTGCAGCTACAGC------------------AC-............................	27	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-CACCAGTCACAGCCACAAG-----C...	22	1	1.00	1	0	0	1	0	0	0

droWil2

AGCAGCA------ACAACAGCAGCAGC-AGCAACAACAA------CAACAA---CAGCAGC------C-ACAGCCACAACAGTT----------------------TGGCTTCCAGTTGAAGAGCAATGTC-GCTGGCCAGT------------------------------------------------------------------------------------CAACGACATCG-----C---------CGCA-------GAATGCAAAGTCAGCAATAATTGCTAATCAAACAGCGCTAGTTG--AGCCATACACAAGCGGAGTTGGAGCCTTTG----------------------------GC--------------------CAACAGCCGCC---G-----------------------------------CC-GC-CACATCACCAGCAACATC--AGCAGCAAC---------------AACAA-CAGCAACAA---C-ACCAG-----CAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................CCACAACAGTT----------------------TGGCTTCCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCCGCC---G-----------------------------------CC-GC-CACATCA.......................................................................	18	2	0.50	1	0	1	0	0	0
...AGCA------ACAACAGCAGCAGC-AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
......A------ACAACAGCAGCAGC-AGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
..CAGCA------ACAACAGCAGCAGC-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	1	1
...................................ACAA------CAACAA---CAGCAGC------C-ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	1
...............AACAGCAGCAGC-AGCAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
......A------ACAACAGCAGCAGC-AGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	2
...................................ACAA------CAACAA---CAGCAGC------C-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATC--AGCAGCAAC---------------AACAA-C...........................	21	19	0.05	1	0	0	0	1	0
.............................GCAACAACAA------CAACAA---CAGCAGC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...AGCA------ACAACAGCAGCAGC-AGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............AACAGCAGCAGC-AGCAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATC--AGCAGCAAC---------------AAC...............................	18	20	0.05	1	0	0	0	1	0
......................................A------CAACAA---CAGCAGC------C-ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.................CAGCAGCAGC-AGCAACAACAA------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
................ACAGCAGCAGC-AGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.....CA------ACAACAGCAGCAGC-AGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
................ACAGCAGCAGC-AGCAACAACAA------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.GCAGCA------ACAACAGCAGCAGC-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------------AACAA-CAGCAACA....................	19	20	0.05	1	0	0	0	1	0
...AGCA------ACAACAGCAGCAGC-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.................................CAACAA------CAACAA---CAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
......A------ACAACAGCAGCAGC-AGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................CAACAA------CAACAA---CAGCAGC------C-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0

droVir3

AACAACA------ACAACA-CG---ACA---AACAACAA------CAA------CAACAAT------A-ACAATAGTAAGAATC-TTTCGCAGCGTACTATTTGTTTT--------GTAAAC-------C---------AATT----AAA-----------GCTTAACATGG-ACATG-------------GGCTCAATTTAACACGCAC---TTAACAATGAACTT---------------------------------G------------------------------------------------AGCTTTGTACGA-----------------------------------------------TTTATT-----------CTAATTGGGATTCGTTTGTCTCTCTC--TCTCTTTC-------TGTCTCTCTCGCACGCAGACAACTCCAGCGTAATTGCGGCTACAGC------------------AA-CAACATCG-------TCAG-----CGAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTC-------TGTCTCTCTCGCACGCAG.............................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGGCTACAGC------------------AA-CAACA.......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACAGC------------------AA-CAACATCG-------TCAG-----C...	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATTCGTTTGTCTCTCTC--TCTC..........................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAATTGCGGCTACAGC------------------AA-CAACA.......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------AA-CAACATCG-------TCAG-----CGA.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTACAGC------------------AA-CAACATCG-------TCAG-----C...	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAAGAATC-TTTCGCAGCGTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGTAATTGCGGCTACA...................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACA------ACAACA-CG---ACA---AACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACAGC------------------AA-CAACATCG-------TCAG-----CGA.	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTACAGC------------------AA-CAACATCG-------TC...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACA-CG---ACA---AACAACAA------CAA------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGGCTACAGC------------------AA-CAAC........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

-----------------------CAACTAACAACAACAA---CAGCAA------CAACAAC------A-ACAATAGTAAGCAC-----CA--------------TTTTG-------TTAGCC-------A----------ATT--AAAGC-----------TTC--ACTTGC-GTACA-------------C------------------------GTCCACAACCTAACACAAGCA-----C---------TTCAACTTG------------------------------------------------AGCTTT-----------------------------------------------------------TCAA-CTTTGA----TTA--ACTGTT-TAACACACAC--TCTCTCTCTG--TCTCCCTCT---CGCACACAGACAACTCCAGTGTTATTGCGGCTACAGCAGCAACGTCGGCAACGGCAAAGGGCAGCGA---CCAACAA-----CAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACGTCGGCAACGGCAAAGGG.........................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAACGGCAAAGGGC........................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAACGGCAAAGGGCAG......................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCAGCAACGTCGGCAA...................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACAGCAGCAACGTCGGCAAC..................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGTCGGCAACGGCAAAGGGC........................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAACGGCAAAGGGCAGC.....................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATTGCGGCTACAGC.................................................	19	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGTCGGCAACGGCAAAGGGCAGC.....................	28	1	1.00	1	0	0	0	0	0	1

droGri2

AGCAGTC------GCAGCAGCAGCAACTGGC-ACAACAG------CAA------CAACAAC------G-TCCTCCGGGT--ATC-------AGCGTGCCG----CCCCC-------CCTGGC-------C---------AAC---AAATT-----------GGTGGCGGGGCGGCACG-------------AG---------CCACACGC---A--GCA----GCGCCGCT-----G------------------------------------------------------------------------------------------------CCGCTGCTGTTGGCATTGTTGATTATAGCGTGCTGCCGGCA-----------GCAGCCGCCACTCACAT--GACG-----------------------CCC---TACGTACC-ACAGCAACAACAGCACT-----CGCACC------------CGCAACAA-CAACAACCA---CAG-CAG-----CAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................AGCGTGCTGCCGGCA-----------GCAGCCGCCACT..............................................................................................................................	27	1	1.00	1	1	0
........................................................ACAAC------G-TCCTCCGGGT--ATC-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1

dsi_14702

2r:4696417-4696566 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads