ID:dsi_14690 |
Coordinate:3r:10107900-10108049 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [3r_10108050_10108183_-]; exon [3r_10108050_10108183_-]; intron [3r_10106694_10108049_-]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCCACAGCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGTTAGTACCACGTTACCACCTAAAACCCCTGTCCCCCACTACCCCATCTATGATCTCCCCCACTGTACCCGAATATGTAAAATACTTCTTAAGTTCACAGAGAATTATTAAGATCGAGTTACAACATATATATTTTAACCGTATCTGTATATCGTTTCGCAATGCTGCGACAAATTCAGGATACGAAAAGCGCTTGAGAA **************************************************................................................................((((..(((((((((....(((((((((((((.....))))..))))))...))).......))))))))).....))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
M024 male body |
GSM343915 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
M023 head |
M053 female body |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....AGCCAAGCTGTCGGAAGC................................................................................................................................................................................................................................... | 18 | 0 | 1 | 22.00 | 22 | 20 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................GTATATCGTTTCGCAATGCTGC................................ | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........AAGCTGTCGGAAGCCTCTCAGGCC......................................................................................................................................................................................................................... | 24 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....CAGCCAAGCTGTCGGAAGC................................................................................................................................................................................................................................... | 19 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................TCTGTATATCGTTTCGCAATGCTGC................................ | 25 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................ATCTGTATATCGTTTCGCAATGCTGC................................ | 26 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..CACAGCCAAGCTGTCGGAAGC................................................................................................................................................................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....AGCCAAGCTGTCGGAAGCG.................................................................................................................................................................................................................................. | 19 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................CTCAGGCCGCCGATGAGAGCGAA.......................................................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................CTCTCAGGCCGCCGATGAGA............................................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............CTGTCGGAAGCCTCTCAGGCCGCC...................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............GTCGGAAGCCTCTCAGGCCGCCG..................................................................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....AGCCAAGCTGTCGGA...................................................................................................................................................................................................................................... | 15 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..CACAGCCAAGCTGTCGGA...................................................................................................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........AAGCTGTCGGAAGCCTCT............................................................................................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................CTCTCAGGCCGCCGATGAGAG.............................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................AGCCTCTCAGGCCGCCGATGAGA............................................................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............GTCGGAAGCCTCTCAGGCCGC....................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........CAAGCTGTCGGAAGCCTCTCAGGC.......................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................TAACCGTATCTGTATATCGTTTCGC........................................ | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....AGCCAAGCTGTCGGAAGCCTCTCAG............................................................................................................................................................................................................................ | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........AAGCTGTCGGAAGCCTCTCA............................................................................................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........AGCTGTCGGAAGCCTCTCAGGC.......................................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....CAGCCAAGCTGTCGGGAGCCTCTCAG............................................................................................................................................................................................................................ | 26 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................TCAGGCCGCCGATGAGAGCGAACGTGC..................................................................................................................................................................................................... | 27 | 3 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........CAAGCTGTCGGAAGCCTCTCAGGCCGC....................................................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........AAGCTGTCAGAAGCCTCTCAGG........................................................................................................................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................CTCTCAGGCCGCCGATGAGAGCGAAC......................................................................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............GTCGGAAGCCTCTCAGGCCGCC...................................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..CACAGCCAAGCTGTCGGAAGCCT................................................................................................................................................................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....AGCCAAGCTGTCGGAAGCCTCTCAGGCCGC....................................................................................................................................................................................................................... | 30 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........AAGCTGTCGGAAGCCTCTCAGGCCGCC...................................................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........AGCTGTCGGAAGCCTCTCAGGCCGC....................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................TGCGACAGATTCAGGATACT............... | 20 | 2 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....AGACAAGCTGTCGGAAGC................................................................................................................................................................................................................................... | 18 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................CGAAAAATTCAGGATAC................ | 17 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................................TGTGACCGAATATGTAAAACA.................................................................................................................... | 21 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................GATGAGAGCGAACGGA...................................................................................................................................................................................................... | 16 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................CCGCCGATGAGAGCGAACGTGC..................................................................................................................................................................................................... | 22 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...ACAGCCAAGCTTTCGGC...................................................................................................................................................................................................................................... | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............TCGGAAGCCTCTACG............................................................................................................................................................................................................................ | 15 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................CGCCGATGATAGTGGACGG....................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
|
CGGTGTCGGTTCGACAGCCTTCGGAGAGTCCGGCGGCTACTCTCGCTTGCCAATCATGGTGCAATGGTGGATTTTGGGGACAGGGGGTGATGGGGTAGATACTAGAGGGGGTGACATGGGCTTATACATTTTATGAAGAATTCAAGTGTCTCTTAATAATTCTAGCTCAATGTTGTATATATAAAATTGGCATAGACATATAGCAAAGCGTTACGACGCTGTTTAAGTCCTATGCTTTTCGCGAACTCTT
**************************************************................................................................((((..(((((((((....(((((((((((((.....))))..))))))...))).......))))))))).....))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
M053 female body |
GSM343915 embryo |
M023 head |
SRR902009 testis |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................GCTTGCTAATCATGG............................................................................................................................................................................................... | 15 | 1 | 5 | 3.40 | 17 | 11 | 4 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................CAGGGGGTGATGGTGT.......................................................................................................................................................... | 16 | 1 | 3 | 0.67 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................GCTTGCTAATCATGGC.............................................................................................................................................................................................. | 16 | 2 | 20 | 0.55 | 11 | 11 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................AGTGCCTGTTAATTATTCTAG..................................................................................... | 21 | 3 | 4 | 0.50 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................AGCTCATTGTCGTATATA..................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................TCTAGCCCAGTGTCGTATAT...................................................................... | 20 | 3 | 7 | 0.29 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................CAGGGAGTGATGGGCTGGA....................................................................................................................................................... | 19 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................AGGGGGTGATGGTGT.......................................................................................................................................................... | 15 | 1 | 15 | 0.20 | 3 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................CGCTGTTGACGTCCTAAGCT.............. | 20 | 3 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................AGGGGGTGATGGCGT.......................................................................................................................................................... | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................CAGGGAGTGATGGGCTGG........................................................................................................................................................ | 18 | 3 | 20 | 0.15 | 3 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 |
| ...........................................AGCTTGCTAATCATGGT.............................................................................................................................................................................................. | 17 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................AGAGGGGGTGACATT.................................................................................................................................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............ACAGTCTTGCGAGAGTCCG.......................................................................................................................................................................................................................... | 19 | 3 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................AGGTGGTGCTGGGGAAGATAC.................................................................................................................................................... | 21 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................CCGGGAGTGATGGGGTGGA....................................................................................................................................................... | 19 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................CGCTTCCCATTCGTGGTGC............................................................................................................................................................................................ | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .................................................................................AGGTGGTGCTGGGGAAGAT...................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................CCGGGGGTGATGGGCT.......................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................ATATGCCGAATTCAAGTGT..................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................AAATTGGCATAGAAA.................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................GTCAGGGGGTGATGGTGTT......................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................................................................................................................TTACGACGCTGTTTG......................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:28 AM