dsi_1469

five_prime_UTR [2l_6420300_6420564_-]; exon [2l_6419597_6420564_-]; intron [2l_6420565_6421040_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAACTGTGGCTGGGCCCACTGTGCGTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTTTTGTGTTTTGTAAAACTGGCCCCTGCTGATTACTCGATGCGTTTGACAAATTCGAACATTACTTTATCGCCTTTTAAACTGTAGGCGAGCGGCATACAAATCGCTTTGAAATTAATTTGCTTTTGATATTCAATTTGTAGTGTTGAAATAAAAAATAATAATACATTAAAGCATTCGAAAATGTAAACGG ******************************************************************************************......((..........................((((((..........))))))...))***********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo
.......................................................................................................................................AAACTGTAGGCGAGCGGC.................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................AAACTGTAGGCGAGCGGCAT...............................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
............................................................................................CTCGATGCGTTTGACAAATTC.........................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.........................................................TTTTTGTGTTTTGTAAA................................................................................................................................................................................	17	0	3	0.67	2	0	0	0	0	0	1	1	0	0
...............................................................................CCCAAGCTGATTACTGGATG.......................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................CTTGATCGCCTTTTAAA................................................................................................................	17	1	2	0.50	1	0	1	0	0	0	0	0	0	0
..........................................................TTTTGTGTTTTGTAA.................................................................................................................................................................................	15	0	5	0.40	2	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................TTCCATTTGTAGCGGTGAAAT.........................................	21	3	6	0.17	1	1	0	0	0	0	0	0	0	0
...............................................AGAGGAAAATTTTTTGTTTT.......................................................................................................................................................................................	20	2	10	0.10	1	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................ATTTGTCATGTTGAAATAGAA.....................................	21	3	18	0.06	1	0	1	0	0	0	0	0	0	0
............................................TTGAGCGGAGAATCTTTTTT..........................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1
.........................................................TTTTTGTGTTTTGAAAA................................................................................................................................................................................	17	1	20	0.05	1	0	0	0	0	1	0	0	0	0
....................................GGGAATTGTTGAGCGGA.....................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1	0
.........................................................TTTTTGTGTTTTGAAA.................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	0	1	0	0	0

ATTGACACCGACCCGGGTGACACGCAAGCTTTGCCGCCTTTAAAAACTCGCCTTTTAAAAAACACAAAACATTTTGACCGGGGACGACTAATGAGCTACGCAAACTGTTTAAGCTTGTAATGAAATAGCGGAAAATTTGACATCCGCTCGCCGTATGTTTAGCGAAACTTTAATTAAACGAAAACTATAAGTTAAACATCACAACTTTATTTTTTATTATTATGTAATTTCGTAAGCTTTTACATTTGCC ***********************************************************************************************......((..........................((((((..........))))))...))******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M025 embryo	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
...........CCCGCGTTACACGCAAGTTT...........................................................................................................................................................................................................................	20	3	11	26.82	295	168	115	10	0	0	0	2	0	0
................................................................................GGTTCGACTAATGACCTAC.......................................................................................................................................................	19	3	13	0.38	5	0	0	0	5	0	0	0	0	0
...........CCCGCGTTACACGCAAGTTTT..........................................................................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0	0
................GTTACACGCAAGCTT...........................................................................................................................................................................................................................	15	1	9	0.22	2	0	0	0	2	0	0	0	0	0
..............................................................................................................................AGCTGAAAATTTGGCATGC.........................................................................................................	19	3	10	0.20	2	0	0	0	0	2	0	0	0	0
................GTTACACGCAAGCTTTAC........................................................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................TAACTTCGTAAGCTTTT.........	17	1	9	0.11	1	0	0	0	0	0	0	0	1	0
...............................................................................GGGTTCGACTAATGACCTA........................................................................................................................................................	19	3	20	0.10	2	0	0	0	2	0	0	0	0	0
.................................................................................................................................................................................................AGACATCACAACTTTGT........................................	17	2	14	0.07	1	0	0	0	0	0	1	0	0	0
....................................CCCTTAAACACTCGCCTAT...................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................ATTTTTTATTATTATG..........................	16	0	20	0.05	1	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:6420515-6420764 -	dsi_1469	TAAC--------T---GTGG----------------CTGG-GCCCACTGTGCGTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAAACTGG----CCCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATCGCTTTGAA-----------------ATT-AATTTGCTTTTGATATTC-------------AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAATAATAATAC--------A-TTAAAGCAT-TCGAAAATGTAAACGG---------------
droSec2	scaffold_3:2185962-2186212 -		CAAC--------T---GTGA----------------CTAGGCCCCACTGTGCTTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAAACTGG----CCCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATTGATTTGAA-----------------ATT-AATTTGCTTTTGATATTC-------------AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAATAATAATAC--------A-TTAAAGCAT-TCGAAAATGTAAACGG---------------
dm3	chr2L:6646898-6647132 -		CAAC--------T---GTGG----------------CTGG-GCCCACTGTGCGTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAAACTGG----CCCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT---------------------GT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATCGCTTTGAA-----------------ATT-AATTTGCTTTTGATATTC-------------AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAAGAATAATAC--------A-TTAAAGCAT-TCGAAAATGTAAACGG---------------
droEre2	scaffold_4929:15556571-15556818 -		CAAC--------T---GTGC----------------CTAG--GCCACTGTGCGTTCGAAACGGTGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAA-CTGG----CT-CTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATAACTTTGAA-----------------ATT-AATTTGCTTTTGTCATTC-------------ATTTTGTAGTGT-----------------------------------TGAAATAA-AAAAAAAATAATTC--------A-TAAAAGCAT-TCGAAAATGTAAACGA---------------
droYak3	2L:6266765-6266996 +		CAAC--------T---GTGG----------------CTAG-ACCCACTGTGCGTTCGAATCGGTGGAAATTTTTGAGCGGAAAATTTT-T---------T-------GTAAA-CTGG----CTCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-----------------------------ATT-AATTTGCTTTTGTCATTC-------------ATTTTGTAGTGT-----------------------------------TGAAATAA-AAAAATAATAATTC--------A-TAAAAGCGT-TCGAAAATGTAAACGG---------------
droEug1	scf7180000409463:2092295-2092552 -		GT--------------------------------TGTCAG-CTCCAGTGTGCGCTCGTTGCGGTGGAAATTTTTGAGCGGAAAATTTTTT---------TGTGTTTTGTAAA-CTGG----CCCCTG------CTGAT-----------TAT---------------T-CGATGCGTTTGACATATTTGAACA---CTACT--TT--ATCGCCAT----TCAAGCTGT-GGGCGAG------------------------------------------------------------CGGCATAC---AA-AACACTTAGA-AT-TTATTTTGGCTCCAATT-AATCTGGTTTTGATATTA-------------TTTTTCCAGTGT-----------------------------------TGAAATAA-ATA---AATAATTG--------A-TAAAAGCAC-CCGAAAATGTAAACGA---------------
droBia1	scf7180000302422:2800762-2801030 +		CATC--------A---GTGG-------------CTGTCAG-TTCCACAGTGCGTTTGTGGCGGTGGAAATTTTCGAGCGGAAAATTTT-T---------TGTGTTTTGTAAA-CTGG----CCCCCG-----CCTGAT-----------TAT---------------T-CGATGCGTTTGACAAATTCGAACA---CTACT--TT--ATCGCCTT----TCAAACTGT-AGGCGAA------------------------------------------------------------CGGCATAC---AA-AACACTCAGA-ATGCTTATTTGATTCAAAGT-AATCTTAATTTGTTATTC-------------ATTTTGCAGTGC-----------------------------------TGAAATAA-ATA---CATATTTG--------ATAAAAAGCTCTCCAAAAATGTAAGCGG---------------
droTak1	scf7180000415660:66574-66833 -		CTGT------------------------------TGTTGA-TTCCACTGTGCGTTTCTGGCGGTGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAA-CTGG----CCCCTG------CTGAT-----------TAT---------------T-CGATGCGTTTGACAAATTCGAACA---CTACT--TT--ATCGCCTT----CTAAACCGT-AGGCGAC------------------------------------------------------------CGGCATAC---AA-AACACTTCTA-AT-TGTGTTTGACTCAAATT-AATCTTAATTTAATATTC-------------GTTTCGTAGTGT-----------------------------------TGAAATAA-ATA---AATAATTG--------ATAAAAAGCAC-CCGAAAATGTAAACAG---------------
droEle1	scf7180000490970:272113-272392 +		TATTGAAGTAAATGCCGC----------------TACTTG-TTCCACTGTGCGTTTGTGACGGTGGAAATTTTTGAGCGGAATTTTTT-T---------TGTGTTTTATAAA-CTGG----CCCCTGCTTATTCTGAT-----------TAT---------------T-CGATGCGTTTGACAAATTCGAACA---CAACG--TT--ATTGCTTT----TGAAACAGT-AGTCTAT------------------------------------------------------------CGGCATA----AA-TTCTGTAAGA-AT-TTT-ATTGGTTTAAATA-AATCATA----------CATATATTGAATAAATTTTGCAGTGT-----------------------------------TTAAGTAA-ATA---AATAATTG--------A-TAAAAGCAC-CCGAAAATGTAAACGG---------------
droRho1	scf7180000780014:219380-219627 +		TTAC--------T---G------------------------TTCCACTGTGCGTTTGTGACGGTGGAAATTTTCGAGCGGAATATTT--T---------TGTGTTTTGTAAA-CTGCCTGCCCGCTG------CTGAT-----------TAT---------------T-CGATGCGTCTGAGAAATTCGAACA---AAACA--CT--ATCGAATT----TTAAACTGT-AGTCTAG------------------------------------------------------------CGGCTAAA---AGAAAATCTTAAA-AT-TTTGTTTGGTTGAAAAAAAATGTAATTTCGATATGA-------------ATTTTGCAGTGT-------------------------------------AAATAA-A---------------------A-TAAAAGCAC-CTGAAAATGTAAGCGG---------------
droFic1	scf7180000453815:386410-386674 +		AAAT--------T---GTCA-----------TTCTATCTG-CTCCACTGTGCTTTTG--GCGGTGGAAATTTTTGAGCGGAAAATTTTGT---------CGTGTTTTGTAAA-CTGG----CCCCTG------CTGAT-----------TAT---------------T-TGATGCGTTTGACAAATTAAAACA---CTATG--TT--ATCGCATT----TTAAACAGT-AGGCGAG------------------------------------------------------------TGGCATAC---AA-AACTCTTAGA-AT-TTTGTTTGGTTCAAATT-AATTC-AGTTTGATATTT-------------ATTTTGAAGTGA-----------------------------------TTGAATAA-ATA---CATAATTG--------G-AAAAAGCAG-CCGAAAATGTAAACGG---------------
droKik1	scf7180000301476:239648-239881 -		TCAC--------T---GTT-----------------CTAA-TCCCACTGT-CGTTCATGGCGGTGGAAATTTTCGAGCGGAAAATTTTTT---------TGTAT---------------------------------T-----------TAT---------------T-TGCTGCGTTTGACAAATTCGAGCA---CTCAGTTTTTTAA--TCA-------CAT------------------------------------------------------------------------TTGAATAA---AG-ATCCTCTACC-AT-ACCTTTTCGTGCAACTT-AATCAATTTTT-TAACAA-------------AATTTTAACAGT---TGAAATAACCC------------------------------ACA---CAAAGTTGAAAAATACA----TAATAC-ACGAAAATGTAAACTG---------------
droAna3	scaffold_12916:8595912-8596187 +		TGCG--------T---GTG--------------CTGTTGG-CTCCACTGTGCGTTCG--TCGGTGGAAATTTTCGAGCGGAAAATTTT-T---------AGTGTTTTATAAAATTTA----CCC---------CTGAT-----------TACGGCCTCAAACGGTGGC-CGATGTGTTTGACA-ATTCGAACAGACCTACT--G-------------------ATTGTCGGGAGAACTT------TTTTTTTTAAATTTTTACTTAAATCTGTTTTTTTATTTATCACTAAAACAGTAACTAAA-----AAAATCTTAA-----------------------------------------------------------------------AAATAGGTCATAATAT--------------TGATTTCA-A-AAAAA---------------G----TAAAAC-CCGAAAATGTAAACGG---------------
droBip1	scf7180000396535:1112988-1113275 +		TTGC--------T---GCGGCTGTGTGCGTGTGCTGTTGG-TTCCACTGTGCGTTCG--TCGGTGGAAATTTTTGAGCGGAAAATTTT-T---------AGTGTTTTATAAATTTTA----CCCC--------CTGAT-----------TACGGCCTCAAACGGTGGC-CGATGCGTTTGTCAAA-TCGAACAGACCTACT--GT--ATCGTCA-------AGATTGT-GGAAGAATTTAAAATATTT---------------------TTGTTTTT-------------------TAACTAAA------AAGTCTTT------------------------------------------------------------------------AAATAGGTCATAATATTGATAAAAAAATAAATAAAAAC-A-AACAAAAAAAAA--------A-AACAAACAC-CCGAAAATGTAAACGG---------------
dp5	4_group5:514736-515004 +		TGC-------------------------------TACTAG-TTCCACTGTGCCGTT--AGCGGTGGAAATTTTTGAGCGGAAAATTTT-TAGTTTGTTTTGTTTTCTGTAAAGTTGA----CTCTTT-----TCTGAT-----------TAT---------------GCCCAAGCGTTTGACTATGTCGAGCA---AAATA--AT--GTCGCGTTGACTCGAAACCG-------AA------------------------------------------------------------TCGTGCGT---AG-AATA--AAGA-AT-TGT----------------GTGTTTATTTTGTATTC-------------ATTTTGCAGTGTGTTTCAAATAAGCC----------------------------------TTCAGA-TTG--------ATTAAAAACTC-CCGAAAATGTAAAAAACAACGTCACATAGAA
droPer2	scaffold_5:5017981-5018234 +		TGC-------------------------------TACTAG-TTCCACTGTGCCGTT--AGCGGTGGAAATTTTTGAGCGGAAAATTTT-TAGTTTGTTTTGTTTTCTGTAAAGTTGA----CTCTTC-----TCTGAT-----------TAT---------------GCCCAAGCGTTTGACGATGTCGAGCA---AAATA--AT--GTCGCGTTGACTCGAAACCG-------AA------------------------------------------------------------TCGTGCGT---AG-AATA--AAGA-AT-TGT----------------GTGTTTATTTTGTATTC-------------ATTTTGCAGTGTGTTTCAAATAAGCC----------------------------------TTCAGA-TTG--------ATTAAAAACTC-CCGAAAATGTAAAAAC---------------
droWil2	scf2_1100000004909:3413241-3413327 +		TGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------ATG-AATCGAAATTTCACATTA---AATTG-----AAG--AAATTCT-----------------------------------TTAAAAAA-A-AAATTTAAATAA--------A-GTAAAAAAT-TCAAAATTGTAAGGGG---------------
droVir3	scaffold_12875:17114339-17114411 -		ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGAATTTCACACAT-------------AATTTGTTTATA-----------------------------------TTTAATTAAA-AAATATTGATTT--------T-TTATTGCTA-CTAACAAT-----------------------
droMoj3	scaffold_6496:20234168-20234306 +		AAAA-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGCTTTACGCTTGT---------------C-GACTGCGACTTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------ATT-AATTTGTTTATTATATTT-------------AATTTATTAATT------------------------------------TAAATAGAA-ACAAAAAAATAC---------------------------------------------------
droGri2	scaffold_8546:4602-4704 +		ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AA-ATCGCCCTGAAAA-C-------------TGG-AAAGTTTTTCTTGTATTT-------------AATGTATATTAT-----------------------------------AAAAATGC-A-ATATTATAAAAA--------A-TACAACAAA-TCGAAAATATGAAAAATAT------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TAAC--------T---GTGG----------------CTGG-GCCCACTGTGCGTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAAACTGG----CCCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATCGCTTTGAA-----------------ATT-AATTTGCTTTTGATATTC-------------AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAATAATAATAC--------A-TTAAAGCAT-TCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................AAACTGT-AGGCGAG------------------------------------------------------------CGGC..................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AAACTGT-AGGCGAG------------------------------------------------------------CGGCAT................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................C---------------T-CGATGCGTTTGACAAATTC..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TTT-T---------TGTGTTTTGTAAA..............................................................................................................................................................................................................................................................................................................................................................................................	17	3	0.67	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TT-T---------TGTGTTTTGTAA...............................................................................................................................................................................................................................................................................................................................................................................................	15	5	0.40	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0

droSec2

CAAC--------T---GTGA----------------CTAGGCCCCACTGTGCTTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAAACTGG----CCCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATTGATTTGAA-----------------ATT-AATTTGCTTTTGATATTC-------------AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAATAATAATAC--------A-TTAAAGCAT-TCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................CTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGC..................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............................................................................................................AACTGG----CCCCTG------CTGAT-----------TAC---------------T-CG...................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------A-TTAAAGCAT-TCGAAAATGT.....................	22	1	1.00	1	0	0	1	0

dm3

CAAC--------T---GTGG----------------CTGG-GCCCACTGTGCGTTCGAAACGGCGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAAACTGG----CCCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT---------------------GT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATCGCTTTGAA-----------------ATT-AATTTGCTTTTGATATTC-------------AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAAGAATAATAC--------A-TTAAAGCAT-TCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................AAACGGCGGAAATTTTTGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................TTGATATTC-------------AATTTGTAGTGT-----------------------------------..........................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................CCACTGTGCGTTCGAAACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0
..........................................................AACGGCGGAAATTTTTGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GATGCGTTTGACAAATTCGAACA---TT........................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGG----------------CTGG-GCCCACTGTGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTTTGAGCGGAAAATTTT-T---------TGTG.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................CCTG------CTGAT-----------TAC---------------T-CGATGCGT.............................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TTGAGCGGAAAATTTT-T---------TGTG.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................GCCCACTGTGCGTTCGAAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TTTGCTTTTGATATTC-------------AATTT....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTTGACAAATTCGAACA---TTACT--TT---------------------............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TTTTGTAAAACTGG----CCCCTG------C........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CGAAACGGCGGAAATTTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AATTTGTAGTGT-----------------------------------TGAAATAA-A-AAA............................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................CTGG----CCCCTG------CTGAT-----------TAC---------------T-CG...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................C---------------T-CGATGCGTTTGACAAA.....................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAAC--------T---GTGC----------------CTAG--GCCACTGTGCGTTCGAAACGGTGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAA-CTGG----CT-CTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-ATAACTTTGAA-----------------ATT-AATTTGCTTTTGTCATTC-------------ATTTTGTAGTGT-----------------------------------TGAAATAA-AAAAAAAATAATTC--------A-TAAAAGCAT-TCGAAAATGTAAACGA---------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................ATAACTTTGAA-----------------ATT-AATTTGCTTTTGTC..........................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................T----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGC..................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................T-T---------TGTGTTTTGTAAA-CTGG----CT-CTG------C........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
................................................................GGAAATTTTTGAGCGGAAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------A-TAAAAGCAT-TCGAAAAT.......................	19	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................TTTGTCATTC-------------ATTTTGTAGT...............................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0

droYak3

CAAC--------T---GTGG----------------CTAG-ACCCACTGTGCGTTCGAATCGGTGGAAATTTTTGAGCGGAAAATTTT-T---------T-------GTAAA-CTGG----CTCCTG------CTGAT-----------TAC---------------T-CGATGCGTTTGACAAATTCGAACA---TTACT--TT--ATCGCCTT----TTAAACTGT-AGGCGAG------------------------------------------------------------CGGCATAC---AA-----------------------------ATT-AATTTGCTTTTGTCATTC-------------ATTTTGTAGTGT-----------------------------------TGAAATAA-AAAAATAATAATTC--------A-TAAAAGCGT-TCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................GG----------------CTAG-ACCCACTGTGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................CGAATCGGTGGAAATTTTTGAGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................CCTG------CTGAT-----------TAC---------------T-CGATGCGTTT...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................TTTTGAGCGGAAAATTTT-T---------T-------...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GT--------------------------------TGTCAG-CTCCAGTGTGCGCTCGTTGCGGTGGAAATTTTTGAGCGGAAAATTTTTT---------TGTGTTTTGTAAA-CTGG----CCCCTG------CTGAT-----------TAT---------------T-CGATGCGTTTGACATATTTGAACA---CTACT--TT--ATCGCCAT----TCAAGCTGT-GGGCGAG------------------------------------------------------------CGGCATAC---AA-AACACTTAGA-AT-TTATTTTGGCTCCAATT-AATCTGGTTTTGATATTA-------------TTTTTCCAGTGT-----------------------------------TGAAATAA-ATA---AATAATTG--------A-TAAAAGCAC-CCGAAAATGTAAACGA---------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATC--------A---GTGG-------------CTGTCAG-TTCCACAGTGCGTTTGTGGCGGTGGAAATTTTCGAGCGGAAAATTTT-T---------TGTGTTTTGTAAA-CTGG----CCCCCG-----CCTGAT-----------TAT---------------T-CGATGCGTTTGACAAATTCGAACA---CTACT--TT--ATCGCCTT----TCAAACTGT-AGGCGAA------------------------------------------------------------CGGCATAC---AA-AACACTCAGA-ATGCTTATTTGATTCAAAGT-AATCTTAATTTGTTATTC-------------ATTTTGCAGTGC-----------------------------------TGAAATAA-ATA---CATATTTG--------ATAAAAAGCTCTCCAAAAATGTAAGCGG---------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGT------------------------------TGTTGA-TTCCACTGTGCGTTTCTGGCGGTGGAAATTTTTGAGCGGAAAATTTT-T---------TGTGTTTTGTAAA-CTGG----CCCCTG------CTGAT-----------TAT---------------T-CGATGCGTTTGACAAATTCGAACA---CTACT--TT--ATCGCCTT----CTAAACCGT-AGGCGAC------------------------------------------------------------CGGCATAC---AA-AACACTTCTA-AT-TGTGTTTGACTCAAATT-AATCTTAATTTAATATTC-------------GTTTCGTAGTGT-----------------------------------TGAAATAA-ATA---AATAATTG--------ATAAAAAGCAC-CCGAAAATGTAAACAG---------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TATTGAAGTAAATGCCGC----------------TACTTG-TTCCACTGTGCGTTTGTGACGGTGGAAATTTTTGAGCGGAATTTTTT-T---------TGTGTTTTATAAA-CTGG----CCCCTGCTTATTCTGAT-----------TAT---------------T-CGATGCGTTTGACAAATTCGAACA---CAACG--TT--ATTGCTTT----TGAAACAGT-AGTCTAT------------------------------------------------------------CGGCATA----AA-TTCTGTAAGA-AT-TTT-ATTGGTTTAAATA-AATCATA----------CATATATTGAATAAATTTTGCAGTGT-----------------------------------TTAAGTAA-ATA---AATAATTG--------A-TAAAAGCAC-CCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTAC--------T---G------------------------TTCCACTGTGCGTTTGTGACGGTGGAAATTTTCGAGCGGAATATTT--T---------TGTGTTTTGTAAA-CTGCCTGCCCGCTG------CTGAT-----------TAT---------------T-CGATGCGTCTGAGAAATTCGAACA---AAACA--CT--ATCGAATT----TTAAACTGT-AGTCTAG------------------------------------------------------------CGGCTAAA---AGAAAATCTTAAA-AT-TTTGTTTGGTTGAAAAAAAATGTAATTTCGATATGA-------------ATTTTGCAGTGT-------------------------------------AAATAA-A---------------------A-TAAAAGCAC-CTGAAAATGTAAGCGG---------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAT--------T---GTCA-----------TTCTATCTG-CTCCACTGTGCTTTTG--GCGGTGGAAATTTTTGAGCGGAAAATTTTGT---------CGTGTTTTGTAAA-CTGG----CCCCTG------CTGAT-----------TAT---------------T-TGATGCGTTTGACAAATTAAAACA---CTATG--TT--ATCGCATT----TTAAACAGT-AGGCGAG------------------------------------------------------------TGGCATAC---AA-AACTCTTAGA-AT-TTTGTTTGGTTCAAATT-AATTC-AGTTTGATATTT-------------ATTTTGAAGTGA-----------------------------------TTGAATAA-ATA---CATAATTG--------G-AAAAAGCAG-CCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCAC--------T---GTT-----------------CTAA-TCCCACTGT-CGTTCATGGCGGTGGAAATTTTCGAGCGGAAAATTTTTT---------TGTAT---------------------------------T-----------TAT---------------T-TGCTGCGTTTGACAAATTCGAGCA---CTCAGTTTTTTAA--TCA-------CAT------------------------------------------------------------------------TTGAATAA---AG-ATCCTCTACC-AT-ACCTTTTCGTGCAACTT-AATCAATTTTT-TAACAA-------------AATTTTAACAGT---TGAAATAACCC------------------------------ACA---CAAAGTTGAAAAATACA----TAATAC-ACGAAAATGTAAACTG---------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGCG--------T---GTG--------------CTGTTGG-CTCCACTGTGCGTTCG--TCGGTGGAAATTTTCGAGCGGAAAATTTT-T---------AGTGTTTTATAAAATTTA----CCC---------CTGAT-----------TACGGCCTCAAACGGTGGC-CGATGTGTTTGACA-ATTCGAACAGACCTACT--G-------------------ATTGTCGGGAGAACTT------TTTTTTTTAAATTTTTACTTAAATCTGTTTTTTTATTTATCACTAAAACAGTAACTAAA-----AAAATCTTAA-----------------------------------------------------------------------AAATAGGTCATAATAT--------------TGATTTCA-A-AAAAA---------------G----TAAAAC-CCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................GTTCG--TCGGTGGAAATTTTCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.............................................ACTGTGCGTTCG--TCGGTGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................CTACT--G-------------------ATTGTCGGGAGAACTT------TTT......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................GAT-----------TACGGCCTCAAACGGTGGC-.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............................................CTGTGCGTTCG--TCGGTGGAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

TTGC--------T---GCGGCTGTGTGCGTGTGCTGTTGG-TTCCACTGTGCGTTCG--TCGGTGGAAATTTTTGAGCGGAAAATTTT-T---------AGTGTTTTATAAATTTTA----CCCC--------CTGAT-----------TACGGCCTCAAACGGTGGC-CGATGCGTTTGTCAAA-TCGAACAGACCTACT--GT--ATCGTCA-------AGATTGT-GGAAGAATTTAAAATATTT---------------------TTGTTTTT-------------------TAACTAAA------AAGTCTTT------------------------------------------------------------------------AAATAGGTCATAATATTGATAAAAAAATAAATAAAAAC-A-AACAAAAAAAAA--------A-AACAAACAC-CCGAAAATGTAAACGG---------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGC-------------------------------TACTAG-TTCCACTGTGCCGTT--AGCGGTGGAAATTTTTGAGCGGAAAATTTT-TAGTTTGTTTTGTTTTCTGTAAAGTTGA----CTCTTT-----TCTGAT-----------TAT---------------GCCCAAGCGTTTGACTATGTCGAGCA---AAATA--AT--GTCGCGTTGACTCGAAACCG-------AA------------------------------------------------------------TCGTGCGT---AG-AATA--AAGA-AT-TGT----------------GTGTTTATTTTGTATTC-------------ATTTTGCAGTGTGTTTCAAATAAGCC----------------------------------TTCAGA-TTG--------ATTAAAAACTC-CCGAAAATGTAAAAAACAACGTCACATAGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................TGTGCCGTT--AGCGGTGGAAATTTTTGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................TCTGAT-----------TAT---------------GCCCAAGCGTT............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CTCTTT-----TCTGAT-----------TAT---------------GCCCAAGCGTTTG..........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GAGCA---AAATA--AT--GTCGCGTTGACTCGA................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................AT-----------TAT---------------GCCCAAGCGTTTGACT.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TGTTTTGTTTTCTGTAAAGTTGA----CTC..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTG--------ATTAAAAACTC-CCGAAAATGT.....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AAACCG-------AA------------------------------------------------------------TCGTGCGT---AG-........................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TGC-------------------------------TACTAG-TTCCACTGTGCCGTT--AGCGGTGGAAATTTTTGAGCGGAAAATTTT-TAGTTTGTTTTGTTTTCTGTAAAGTTGA----CTCTTC-----TCTGAT-----------TAT---------------GCCCAAGCGTTTGACGATGTCGAGCA---AAATA--AT--GTCGCGTTGACTCGAAACCG-------AA------------------------------------------------------------TCGTGCGT---AG-AATA--AAGA-AT-TGT----------------GTGTTTATTTTGTATTC-------------ATTTTGCAGTGTGTTTCAAATAAGCC----------------------------------TTCAGA-TTG--------ATTAAAAACTC-CCGAAAATGTAAAAAC---------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................AA------------------------------------------------------------TCGTGCGT---AG-AATA--AAGA-.............................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GTGCGT---AG-AATA--AAGA-AT-TGT----------------GTGTT..................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................TTGACTCGAAACCG-------AA------------------------------------------------------------TCGTGT................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................CCCAAGCGTTTGACGATGTCGAGCA---..........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GT---AG-AATA--AAGA-AT-TGT----------------GTGTT..................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGA-TTG--------ATTAAAAACTC-CCGAAA.........................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................A------------------------------------------------------------TCGTGCGT---AG-AATA--AAGA-.............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droWil2

TGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------ATG-AATCGAAATTTCACATTA---AATTG-----AAG--AAATTCT-----------------------------------TTAAAAAA-A-AAATTTAAATAA--------A-GTAAAAAAT-TCAAAATTGTAAGGGG---------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAATAA--------A-GTAAAA...................................	18	20	0.05	1	0	0	0	1	0

droVir3

ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGAATTTCACACAT-------------AATTTGTTTATA-----------------------------------TTTAATTAAA-AAATATTGATTT--------T-TTATTGCTA-CTAACAAT-----------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

AAAA-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGCTTTACGCTTGT---------------C-GACTGCGACTTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------ATT-AATTTGTTTATTATATTT-------------AATTTATTAATT------------------------------------TAAATAGAA-ACAAAAAAATAC---------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................GAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	19	1	71.00	71	17	0	0	0	0	54
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	23	1	55.00	55	22	0	2	3	1	27
...............................................................................................................................................................................................................................GTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	21	1	23.00	23	11	0	0	1	0	11
..................................................................................................................................................................................................................................AT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	19	1	19.00	19	9	0	1	0	0	9
..................................................................................................................................................................................................................................AT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	18	1	19.00	19	17	0	1	0	1	0
..............................................................................................................................................................................................................................AGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	22	1	18.00	18	9	0	0	2	1	6
..............................................................................................................................A------TTTATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	27	1	13.00	13	12	0	0	0	1	0
..............................................................................................................................A------TTTATTGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	29	1	12.00	12	12	0	0	0	0	0
...............................................................................................................................................................................................................ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	25	1	12.00	12	6	0	0	0	0	6
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	24	1	11.00	11	7	0	0	1	1	2
.................................................................................................................................................................................................................................GAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	20	1	11.00	11	8	0	0	0	0	3
..............................................................................................................................A------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	22	1	10.00	10	10	0	0	0	0	0
...............................................................................................................................................................................................................................GTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	22	1	9.00	9	4	0	0	0	0	5
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	9	0	0	0	0	0
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	28	1	8.00	8	4	0	0	0	0	4
................................................................................................................................................................................................................................TGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	20	1	7.00	7	2	0	0	0	0	5
...............................................................................................................................................................................................................ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---A.................................................................................................................................................................................................	26	1	7.00	7	2	0	0	0	0	5
........................................................................................................................................ATTGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	6	0	0	0	0	0
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTCC----TC.................................................................................................................................................................................................................................................................................	22	1	6.00	6	6	0	0	0	0	0
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGT.............................................................................................................................................................................................................................................................................	26	1	6.00	6	6	0	0	0	0	0
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	27	1	6.00	6	5	0	0	0	0	1
..............................................................................................................................A------TTTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0
.....................................................................................................................................TTTATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
...........................................................................................................................................................................................................................TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	25	1	4.00	4	0	0	0	1	0	3
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	2	0	0	0	0	2
............................................................................................................................................................................................................................CAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	24	1	4.00	4	0	0	0	2	0	2
...............................................................................................................................................................................................................................GTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	18	1	4.00	4	1	0	0	1	0	2
..............................................................................................................................................................................................................................AGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	23	1	3.00	3	0	0	0	1	0	2
............................................................................................................................CTA------TTTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	2	0	0	0	0	1
..............................................................................................................................................TTACGCTTGT---------------C-GACTGCGACT...........................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	1	0	2
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTCC----TCAA...............................................................................................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................A------TTTATTGCTTTACGCTTGT---------------C-GACTG................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
.............................................................................................................................TA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
...................................................................................................................GT-------CTA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	2	0	0	0	0	1
.............................................................................................................................................TTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................................ATAGGTCC----TCAAGTGAT-GAGC.....................................................................................................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	1	0
........................................................................................................................................ATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................TGCTTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................TTTATTGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................................................T--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	26	1	3.00	3	1	0	0	0	0	2
...................................................................................................................................................................................................................................T-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTCC----TCA................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
............................................................................................................................CTA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................CA-------------ATA-G--TT--ATAGGTCC----TCAAGT.............................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................A-------------ATA-G--TT--ATAGGTCC----TCAAGT.............................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................TTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................T--ATAGGTCC----TCAAGTGAT-GA.......................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................ATAGGTCC----TCAAGTGAT-GA.......................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TC.................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................TGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	1
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................T--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---A.................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	0	1
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
..................................................................................................................TGT-------CTA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
................................................................................................................................................................................ACTTTCA-------------ATA-G--TT--ATAGGTCC----TC.................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................AGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATA------------..............................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1
......................................................................................................................................................................................................A-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................TCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
....................................................................................................................................................................................................ATA-G--TT--ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................CTTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................AGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	1
.....................................................................................................................................TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................TTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTG............................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAAC..............................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
...............................................................................................................................................TACGCTTGT---------------C-GACTGCGACT...........................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
......................................................................................................................................................................................A-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................A-G--TT--ATAGGTCC----TCAAGTGAT-GA.......................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................GTGAT-GAGCGGG------------------------------------------------------------C---AAACAA............................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	0	1
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...A-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
............................................................................................................................CTA------TTTATTGCTTTACGCTTGT---------------C-.....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................TCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---A.................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................TA------TTTATTGCTTTACGCTT........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................ATTGCTTTACGCTTGT---------------C-GACTGCGACT...........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GACTGCGACT...........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................CTGCGACTTTCA-------------ATA-G--TT--ATAGGTCC----TC.................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................CTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................C----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................GACTTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGT.............................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGT.............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................AGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------ATT-AATTTG..................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATA-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GACT.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................ACTTTCA-------------ATA-G--TT--ATAGGTCC----TCAA...............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-GAGC.....................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................TAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---A.................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................TA-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................TCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................TA------TTTATTGCTTTACGCTTGT---------------C-GACTGCG..............................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................TA------TTTATTGCTTTACGCTTGT---------------C-.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................ACTGCGACTTTCA-------------ATA-G--TT--ATAGG..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCA................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................TAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................CGGG------------------------------------------------------------C---AAACAATT------------A-----------------ATT-AATTTG..................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................GCTTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................TTGCTTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................T--ATAGGTCC----TCAAGTGAT-GAG......................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................A------TTTATTGCTTTACGCTTGT---------------C-GACT.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................TGCTTTACGCTTGT---------------C-GACTG................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GACTGCG..............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TGCGACTTTCA-------------ATA-G--TT--ATAGGT.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGAT-GAGCGG...................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................CTA------TTTATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................TTCA-------------ATA-G--TT--ATAGGTCC----TC.................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................TA-G--TT--ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..AA-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGCTTTACGCTT........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................TTGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................T-GAGCGGG------------------------------------------------------------C---AAACAATT------------A-----------------ATT-AATTTG..................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................TA------TTTATTGCTTTACGCTTGT---------------C-GACTGC...............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................TATTGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................CTGT-------CTA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................AGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAAC..............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................ATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................CTTTCA-------------ATA-G--TT--ATAGGTC........................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTG............................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................T--ATAGGTCC----TCAAGTGAT-GAGCGG...................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...................................................................................................................GT-------CTA------TTTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..AA-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGCTTTACG...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................GTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---A.................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................GTGAT-GAGCGGG------------------------------------------------------------C---AAACAAT...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-GAG......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................A-G--TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................TTTACGCTTGT---------------C-GACTGCGACT...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................................................................................................CTGT-------CTA------TTTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................TGCTTTACGCTTGT---------------C-GACT.................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAAT...........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---A.................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAAA...........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAAG..............................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................ATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................CC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AA................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.AAA-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGCTTTACGCT.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAA...............................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TGCGACTTTCA-------------ATA-G--TT--ATAGGTCC----TCA................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................CTGCGACTTTCA-------------ATA-G--TT--ATAGGTCC----TCA................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGAT-GAG......................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TATTGCTTTACGCTTGT---------------C-GACTCGA..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGAT-GAGCG....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................TTCA-------------ATA-G--TT--ATAGGTCC----TCAAGT.............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................CC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------..............................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................TGCTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................A-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-GAG......................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................TTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................AGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................CC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---..................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................AGTGAT-GAGCGGG------------------------------------------------------------C---AAAC..............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................T-------CTA------TTTATTGCTTTACGCTTGT---------------C-G....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................A-G--TT--ATAGGTCC----TCAAGTGAT-GAGC.....................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
AAAA-------------------------------------------------------------------------------------------------------------CTGT-------CTA------TTTATTGC.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CAAGTGAT-GAGCGGG------------------------------------------------------------C---AAA...............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................TTTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................TTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGAT-GAGC.....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAATT------------C-----------------............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................AGGTCC----TCAAGTGAT-GAGC.....................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................A-------------ATA-G--TT--ATAGGTCC----TCAAGTG............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................CTTTACGCTTGT---------------C-GACTGCGA.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTCA-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................TGCTTTACGCTTGT---------------C-GACTGCG..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TATTGCTTTACGCTTGT---------------C-GACTGCGAC............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................TA-G--TT--ATAGGTCC----TCAAGTGAT-GA.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................GGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................TA------TTTATTGCTTTACGCTTGT---------------C-GA...................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................GTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAACA.............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................GACTGCGACTTTCA-------------ATA-G--TT--ATAGG..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................TTACGCTTGT---------------C-GACTGCGACTTTCA-------------AT........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................TTCA-------------ATA-G--TT--ATAGGTCC----TCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................A-------------ATA-G--TT--ATAGGTCC----TCAAGTGAT-.........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GGG------------------------------------------------------------C---AAACAATT------------A-----------------ATT-AAT.....................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................G--TT--ATAGGTCC----TCAAGTGAT-G........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................AAGTGAT-GAGCGGG------------------------------------------------------------C---AAACAA............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GGTCC----TCAAGTGAT-GAGCGGG------------------------------------------------------------C---AAAC..............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATA-G--TT--ATAGGTCC----TCAAGTGA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................T-GAGCGGG------------------------------------------------------------C---AAACAATT------------T-----------------............................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0

droGri2

ATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AA-ATCGCCCTGAAAA-C-------------TGG-AAAGTTTTTCTTGTATTT-------------AATGTATATTAT-----------------------------------AAAAATGC-A-ATATTATAAAAA--------A-TACAACAAA-TCGAAAATATGAAAAATAT------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-12.5	-12.5	-12.4	-11.6

dsi_1469

2l:6420565-6420714 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads