ID:

dsi_14678

 Coordinate:

2r:20069277-20069426 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.9 -12.3 -12.0 -12.0

Flybase annnotation

CDS [2r_20069427_20070461_+]; exon [2r_20069427_20070461_+]; intron [2r_20068661_20070846_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGACGCGCCGCCTTTCTGTTCCCATTCGTATGTTCGCGGAGCTTATGCAAACAACTTGTTATTGATCTAAGACATTGGACCTCAAGTGGCGAGTGTAATTGTTTTGTCGCTGTCATTGTTATTGCGCTACGGATTGCTTCGCCCCACTCTCTGCGAGTGGCCAGTGGTCGTGGTCGAGTGTTGGTTTATAATTAGCAGAATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC
****************************************************************(((((..((((...(((....(((((((((.........))))))))))))..))))..........)))....))************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................................................................................TAGCAGAATGCGCAACTG....................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GAGTCTGTCGCCGCAAGGCCT. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................GATCTAAGACATTGGACCTCAAGTGGC............................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTAGTCGTGGTCGAGTGTT................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................CATTGTTATTGCGCTACGGATTGCTT.............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................AACAACTTGTTATTGATCTAAGACATT............................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................TATTGATCTAAGACATTGGACCTC...................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................CTAAGACATTGGACCTCAA.................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................ATTGATCTAAGACATTGGACC........................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................AATTAGCAGAATGCGCAACTG....................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TTGCCAAAATTCAGCAAAGTC................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................CTAAGACATTGGACCTCAAGT.................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAGCAGAATGCGCAACTGCTTGCC................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................ATTGCGCTACGGATTGCTC.............................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCCAAAATTCAGCAAAGTCT................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................ACATTGGACCTCAAGT.................................................................................................................................................................. 16 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................TTCGAGGTCGAGGGTTGGTTT.............................................................. 21 3 4 0.50 2 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................................................................................................................................AGTCTGTCGCCGCCAGGCCT. 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTCTGTCGCCGCCAGGCCT. 19 3 15 0.27 4 0 0 0 4 0 0 0 0 0 0
.................................................................................................AATGCTTATGTCGCTGTCATT.................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................AGTCGGTCGCCGCCAGTCCT. 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTCGTTCGCCGCCAGGCCT. 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAGTCTTTCGCAGCA....... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................GTCGGTCGCCGCCAGTCCT. 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0
..................................................................................TCAGGTGGTGAGTGTAA....................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................CTGCCAGTGGTAGTGGTCGA........................................................................ 20 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................TTGGTATTACGCTACG...................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................AGTGATCGGGTGTTGGTTT.............................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCTGCGCGGCGGAAAGACAAGGGTAAGCATACAAGCGCCTCGAATACGTTTGTTGAACAATAACTAGATTCTGTAACCTGGAGTTCACCGCTCACATTAACAAAACAGCGACAGTAACAATAACGCGATGCCTAACGAAGCGGGGTGAGAGACGCTCACCGGTCACCAGCACCAGCTCACAACCAAATATTAATCGTCTTACGCGTTGACGAACGGTTTTAAGTCGTTTCAGAAAGCGGCGTTCAGGAG
**************************************************************************************************************(((((..((((...(((....(((((((((.........))))))))))))..))))..........)))....))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR902009
testis
......................................................................................................................CAGTATCGCGATGGCTAAC................................................................................................................. 19 3 6 1.50 9 0 0 0 5 0 2 2 0
.....................................................................................................................................................................................................................ACGGTTTTAAGTCGTTTCAGAAA.............. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................AGCATACAAGCGCCACGAATACGT........................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................GAACGGTTTTAAGTCGTCTCAGAAAG............. 26 1 4 1.00 4 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGTCGTTTCAGAAAG............. 16 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GAACGGTTTTAAGTCGTCTCAGAAA.............. 25 1 4 0.75 3 0 3 0 0 0 0 0 0
...............................................................................................................................................................................................................TGACGAACGGTTTTAA........................... 16 0 4 0.50 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAACGGTTTTAAGTCGTTTCAGAAAG............. 26 1 4 0.50 2 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AACGGTTTTAAGTCG....................... 15 0 6 0.33 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AAGCGGCGTTCTGGAG 16 1 6 0.33 2 0 0 1 0 1 0 0 0
...................................................................................................................................................................................................................GAACGGTTTTAAGTCGTCTCAGAAAGC............ 27 1 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GAACGGTTTTAAGTCGTCTC................... 20 1 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GAACCGTTTTAAGTCGTCTCAGAAA.............. 25 2 4 0.25 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AACGGTTTTAAGTCGT...................... 16 0 4 0.25 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GAGCGGTTTTAAGTCGTCTCAGAAAG............. 26 2 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GAACGGTTTTAAGTCGTCTCA.................. 21 1 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGACGAACGGTTTTA............................ 15 0 5 0.20 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACGGTTTTAAGTCGT...................... 15 0 6 0.17 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TCTAAGTGGTTTCAGAAA.............. 18 2 7 0.14 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TTGACGACCGGTTTCAAGT......................... 19 2 10 0.10 1 0 0 0 0 0 0 0 1
........................................................................................................................ATAACGGGATGCTGAACGAA.............................................................................................................. 20 3 10 0.10 1 0 0 1 0 0 0 0 0
............................................................................................................................................GCGGGGTGAGAGGCG............................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TCAGAAAGCGGGGTTATGG.. 19 3 18 0.06 1 0 0 0 1 0 0 0 0
........................TAAGCATACTAGCGCT.................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCGGTTTTAAGTCGT...................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20069227-20069476 + dsi_14678 GCGACG--------CGCCG--CC---TT-TCTGTTCC------CATTCGTATGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------GCTACGGATT-------------------------------------------------GCTTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTC------------GT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----
droSec2 scaffold_9:2839608-2839857 + GCGACG--------CGCCG--CG---TT-TCTGTTCC------CATTCGTATGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTCGTCGCT---GTCATTGTTATTGC----------------------------------GCTACGCATT-------------------------------------------------GCTTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTC------------GT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----
dm3 chr2R:19560197-19560448 + GCGACG--------CGCCG--CG---TTCTCTGTTCC------TATTCGTATGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------GCTACGGATT-------------------------------------------------GCTTCGCCCCA----CTCTCTG-CTCTCT--GGCCAGTGGTC------------GT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTTAGCAAAGTCTTTCGCCGCAAGTCCTC-----
droEre2 scaffold_4845:20922163-20922412 + GCGACG--------CGCCG--CG---TT-------TC------TATTCGTCTGTTCG-------CGTAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------CATACGGATT-------------------------------------------------GATTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTCGTG------GTCGT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----
droYak3 2R:19536848-19537103 + GCGACG--------CGACG--CG---TT-------TC------TATTCGTACGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------ACTACGGATT-------------------------------------------------GGTTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTCGTGGTCGTGGTCGT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----
droEug1 scf7180000409474:86082-86305 - GCGAC-------------G--C---GCT-------TC------CATTCGTCTGTTCG-------TGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----A--GTGTAATTGC------CGCT---GTCATTGTTATTGC----------------------------------GACACGGATT-------------------------------------------------GGATCGCTTCA----CTCTCTC-CGA-GT--GGC---------------------------CGAGTG-TTGT-------------------TGATTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCAAAGTCTTCCGCCGCAAGTCCTC-----
droBia1 scf7180000301754:4026894-4027127 + GCGAG-------------G--C---GTT-------TC------TATTCGTGTGCTCG-------CCTAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGCTGTTGTCATTGTTATTGC----------------------------------GATACGGATTTCGGTGCG-------------------------------------GATTGGTTCGCCTCACT-TCACTCTC-CGA-GTGTGGCC------------------------------------T-------------------TTAGTTATAA--------AACAGA-ATGCGCAACTGTTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----
droTak1 scf7180000415306:118567-118794 - GCGACG--------AG--G--C---GTT-------TCTAC---TATTCGTGTGCTCG-------TCTAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGCCGCTGTCATTGTTATTGC----------------------------------GATACGGATTTCGG-----------------------------------------------TTCAGTTCA----CTCC--------------G-------CT-----------C---GC-CGAGTGGTTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAATTCAGCAAAGTCTTCCGCCGCAAGTCCTC-----
droEle1 scf7180000491201:1219627-1219889 - GCGAC-------------G--C---GTT------TTC------TGTTCGTGTGTTCGTGTGTGTTGGAGCTTATGCAAACA------ATTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTGC------CGCT---GTCATTGTTATTGC----------------------------------GATACGGATT-------------------------------------------------GTGTCGCTTCA----CGCTCTCCCGA-GTGTGGC---------------------------TGAGTG-TTGTGTTGTGTAGTGTTGTGTTGTGCGTTATAATTAGCATTAGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTCATC--
droRho1 scf7180000778122:99537-99757 - GCGCC-------------G--CA---TT-------GC------TGTTCGTCTG--------TGTTGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----T--GTGTAATTGC------CGCT---GTCATTGTTATTGC----------------------------------GATACGGATT-------------------------------------------------GTGTCGCTTCA----CTCTCTCCCGA-GT--GGC---------------------------TGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGTAAAGTCTTTCGCCGCAAGTCCTC-----
droFic1 scf7180000453809:655795-656063 - A-GTTG--------CGCCG--CA---TT-------T----------TCGTTCGGTCGT--GTATCTGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----TGTGTGTAATTGT------GGCT---GTCATTGTTATTGCGAAGAGTGATTACCATTGCCATCGCTATTGC---GAT------T-------------------------------------GTGACTGTGACTGTGTCGCTTCAATCGCTCTCCC-CGA-GT--GGC---------------------------TGAGTG-TCGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGTAAAGTCTTCCGCCGCAAATCCTC-----
droKik1 scf7180000302470:2172926-2173176 - CT----------------------------------C------CGTTCGTGTG---G-------CGTCGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCCGCTAGCCGAGTGCCCCAGTGTTTGGTGTTCAGTGTTCAGTGTTCATTGTTTAGTGCTCCGTGTGCTTTAGTGGCC-----A--GTGTAATTGT------CGCT---CTCAATCT-------------------------------------------------------------------------------------------------------------------CCCCTCCTGC--------------------------------GT-CGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCCATGTCTTTCGTCGCAAATCC-------
droAna3 scaffold_13266:8195221-8195460 + GTCATT--------AGTCGTCC---GTC-------TCCATTATTGTGCGTGTG--------TAGTGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTACC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGGT---GTCATTGTTATTGT----------------------------TGCGGTGATAGCGTTT-------------------------------------------------CGGCCGCTTCA----CTCTCTCCCGA-GT--GGC---------------------------TGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCCGTGTCTTCCGCCGCAAATCCTC-----
droBip1 scf7180000396759:621608-621848 - GTCATT--------AGT-C--C---GTC-------TCCATTATAGTGCGTGTG--------TGGTGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGGT---GTCATTGTTATTGT----------------------------TGCGGTGATAGT---GTCGG-------------------TGT-----------------------CGGTCGCTTCA----CTCTCTCCCGA-GT--GGC---------------------------TGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCCGTGTGTTCCGCCGCAAATCCTC-----
dp5 3:9441546-9441807 - GGATC-------------G--C---GTC-------T------------G--TGTC------TGTTGAGGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGACCGCT-CAAGTGCT--------------------------------------------------------------------------T-----A--GCGTAATTGT------CATT---GTTA------T-----------ATTGTCATAGTTATTGCCATTGC---GATTCCGATTGCGGCACAGTGAGTGAGTGACTGAGTGAGTGACTCCG----------------------A----GTGTCGTCCGA-GT--GC---------C-----------G----TCTGAGTG-CAGT----------------------TTTATAATT------AGCTGAAATGCGCAATTGCTTGCCAAAACTCACGAATGTCTTTCGCCGCAAATCCTC-----
droPer2 scaffold_4:4764960-4765232 - dpe_1598 GGATC-------------G--C---GTC-------T------------G--TGTC------TGTTGAGGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGACCGCT-CAAGTGCT--------------------------------------------------------------------------T-----A--GCGTAATTGT------CATT---GTTA------T-----------ATTGTCATAGTTATTGCCATTGC---GATTCCGATTGCGGCACAGTGAGTGAGTTACTGAGTGAGTGACTCCG---------A--GTGTCGTCCGA----GTGTCGTCCGA-GT--GT---------C-----------G----TCTGAGTG-CAGT----------------------TTTATAATT------AGCTGAAATGCGCAATTGCTTGCCAAAACTCACGAATGTCTTTCGCCGCAAATCCTC-----
droWil2 scf2_1100000004954:2495047-2495203 - -------------------------------------------------------------------------------CA------GCCTATTGTTGGTGT------------------------------AGGACATTGAAG--ATACGACTGGT--------------------------------------------------------------------------G-----A--CTTTG-----------CAGT---CCGATTGATATTGA----------------------------------GAT------T-------------------------------------------------------------------------GA-GT--GGG-------GC-----------G----TGTGAGTGTCCGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAATTTACAAATGTGTTCCGCTCGAAATCGTC-----
droVir3 scaffold_12875:18435787-18435905 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----A--GTGTTCTTT-TGTTGTTGTT---GATATTGATATTGT----------------------------------GAA-----------------------------------------------------------------------------------GT--AGCTTAGCG--------------G----TGTGAGTG-TTAT----------------------TGTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAA---------ATTTTTCGCACCAAATCATC-----
droMoj3 scaffold_6496:12085671-12085764 - TGC---------------------------------------------------------------------------------------------------------------------------------------------------GAGTGA--------------------------------------------------------------------------------------------------------------------------------------------------GTGTGC---GAG------T-------------------------------------GTG---------------------------------------------------A-----------G----TGTGAGTG-TTAT----------------------TGTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAA---------ATATTTCGCACCAAATCATCGT---
droGri2 scaffold_15245:4550229-4550504 - CGGACAATAATATGTGCCG--CAGTGCT---------------------TCTGTTTT-------TGCTGCTTACGCAAACGCTCTGCATTCGTTGTTGATGTTGTTGGTGTTGCTGTTGTTGCTGGCGTAGAAGGACATTTGGA--GTATAATAGACTATATGC---------A---------------------GT----------TTGAGCATC---------------GAGTCAA--GTGTTTTTGT------TGATGTGCCCATTGATATTGT----------------------------------GA----------------------------------------------------------------------------------A-GT--AGCCAAGCAGCG-----------CGCC-AGTGAGTG-TTAT----------------------TGTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAA---------ATTTTTCGAACCAAATCGTCGTCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGACG--------CGCCG--CC---TT-TCTGTTCC------CATTCGTATGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------GCTACGGATT-------------------------------------------------GCTTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTC------------GT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGCAGA-ATGCGCAACTG............................................1813.00303000000000000000
.................................................................................................GATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.........................................................................................................................................................................................................................................................................CATTGTTATTGC----------------------------------GCTACGGATT-------------------------------------------------GCTT.......................................................................................................................................................................2611.00100010000000000000
.............................................................................AACA------ACTTGTTATTGATCT------------------------------AAGACATT.................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.............................................................................................TATTGATCT------------------------------AAGACATTGGAC--CT-C.......................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................................................................................................CT------------------------------AAGACATTGGAC--CT-CAA.....................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..............................................................................................ATTGATCT------------------------------AAGACATTGGAC--C..........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT------AGCAGA-ATGCGCAACTG............................................2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCAAAATTCAGCAAAGTC......................2111.00100000100000000000
....................................................................................................CT------------------------------AAGACATTGGAC--CT-CAAGT...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGCAGA-ATGCGCAACTGCTTGCC......................................2411.00100010000000000000
................................................................................................................................................................................................................................................................................ATTGC----------------------------------GCTACGGATT-------------------------------------------------GCTC.......................................................................................................................................................................1911.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAATTCAGCAAAGTCT.....................2011.00100000100000000000
.......................................................................................................................................ACATTGGAC--CT-CAAGT...................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
droSec2
GCGACG--------CGCCG--CG---TT-TCTGTTCC------CATTCGTATGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTCGTCGCT---GTCATTGTTATTGC----------------------------------GCTACGCATT-------------------------------------------------GCTTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTC------------GT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................GTTCC------CATTCGTATGTTCG-------CG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................CTCTG-CGA-GT--GGCCAGTGGTC------------GT-GGT-..............................................................................................................2611.0010010
...........................................................................................GTTATTGATCT------------------------------AAGACATTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCTTTCGCCGCAAGTCC.......2011.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................GA-GT--GGCCAGTGGTC------------GT-GGT-..............................................................................................................2011.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................CTCTG-CGA-GT--GGCCAGTGGTC------------GT-..................................................................................................................2311.0010010
dm3
GCGACG--------CGCCG--CG---TTCTCTGTTCC------TATTCGTATGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------GCTACGGATT-------------------------------------------------GCTTCGCCCCA----CTCTCTG-CTCTCT--GGCCAGTGGTC------------GT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTTAGCAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................GTTCC------TATTCGTATGTTCG-------CGGAGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTGGTC------------GT-GGT-CGAG..........................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT------AGCAGA-ATGCGCAACTG............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTC------------GT-GGT-CGAGTG-TTGG----------------------.............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTA........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................T--GGCCAGTGGTC------------GT-GGT-CGAC..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTCTCT--GGCCAGTGGTC------------GT-GGT-..............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................CGTATGTTCG-------CGGAGCTTATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TTGG----------------------TTTATAATT------AGCAGA-ATGC...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGC..........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGTCGCT---GTCATTGTTATTGC----------------------------------......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTC............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CTG-CTCTCT--GGCCAGTGGTC------------G....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................AGACATTGGAC--CT-CAAGTGG.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CTACGGATT-------------------------------------------------GCTTCGCCCCA----CTCTC.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTTCG-------CGGAGCTTATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGT.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGTGGTC------------GT-GGT-CGAGTG-T......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................G-----A--GTGTAATTG-TTTTGTCGCT---......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...ACG--------CGCCG--CG---TTCTCTGTTCC------TATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
droEre2
GCGACG--------CGCCG--CG---TT-------TC------TATTCGTCTGTTCG-------CGTAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------CATACGGATT-------------------------------------------------GATTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTCGTG------GTCGT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCAAAGTCTTTCGCCGCA............2211.0011000000
..............................................................................................ATTGATCT------------------------------AAGACATTGGAC--CT-........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..................................................................................................................................................................................................................................................GTAATTG-TTTTGTCGCT---GTCAT.................................................................................................................................................................................................................................................................................2211.0010000010
............................................................................................................................................GGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TT.................................................................................................................................................................................................................................................................................................2711.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................GT--GGCCAGTGGTCGTG------GTCGT-G.................................................................................................................2211.0010000010
droYak3
GCGACG--------CGACG--CG---TT-------TC------TATTCGTACGTTCG-------CGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTG-TTTTGTCGCT---GTCATTGTTATTGC----------------------------------ACTACGGATT-------------------------------------------------GGTTCGCCCCA----CTCTCTG-CGA-GT--GGCCAGTGGTCGTGGTCGTGGTCGT-GGT-CGAGTG-TTGG----------------------TTTATAATT------AGCAGA-ATGCGCAACTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................GT-CGAGTG-TTGG----------------------TTTATAATT------AGC...........................................................2411.00101000000000
....................................C------TATTCGTACGTTCG-------CGGAGCTTATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................................................................ATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GT...........................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCAAAGTCTTTCGCCGCAAGTC........2711.00100000010000
........................................................................................................................................CATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GT...........................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................ACTTGTTATTGATCT------------------------------AAGACAT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................TATTCGTACGTTCG-------CGGAGCTTATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................TT-------TC------TATTCGTACGTTCG-------CGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTGGTCGT-GGT-CGAGT.........................................................................................................2011.00100000100000
....................................................................................................CT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GT...........................................................................................................................................................................................................................................................................................................2811.00100000010000
.....................................................................................................................................AGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GT...........................................................................................................................................................................................................................................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................CTCTG-CGA-GT--GGCCAGTGGTCGT...............................................................................................................................2311.00100000010000
................................................GTACGTTCG-------CGGAGCTTATGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGTCGT-GGT-CGAGTG-TTGG----------------------.............................................................................2211.00100000010000
droEug1
GCGAC-------------G--C---GCT-------TC------CATTCGTCTGTTCG-------TGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----A--GTGTAATTGC------CGCT---GTCATTGTTATTGC----------------------------------GACACGGATT-------------------------------------------------GGATCGCTTCA----CTCTCTC-CGA-GT--GGC---------------------------CGAGTG-TTGT-------------------TGATTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCAAAGTCTTCCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotal
No Reads
droBia1
GCGAG-------------G--C---GTT-------TC------TATTCGTGTGCTCG-------CCTAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGCTGTTGTCATTGTTATTGC----------------------------------GATACGGATTTCGGTGCG-------------------------------------GATTGGTTCGCCTCACT-TCACTCTC-CGA-GTGTGGCC------------------------------------T-------------------TTAGTTATAA--------AACAGA-ATGCGCAACTGTTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotal
No Reads
droTak1
GCGACG--------AG--G--C---GTT-------TCTAC---TATTCGTGTGCTCG-------TCTAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGCCGCTGTCATTGTTATTGC----------------------------------GATACGGATTTCGG-----------------------------------------------TTCAGTTCA----CTCC--------------G-------CT-----------C---GC-CGAGTGGTTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAATTCAGCAAAGTCTTCCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotal
No Reads
droEle1
GCGAC-------------G--C---GTT------TTC------TGTTCGTGTGTTCGTGTGTGTTGGAGCTTATGCAAACA------ATTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGGC--------------------------------------------------------------------------G-----A--GTGTAATTGC------CGCT---GTCATTGTTATTGC----------------------------------GATACGGATT-------------------------------------------------GTGTCGCTTCA----CGCTCTCCCGA-GTGTGGC---------------------------TGAGTG-TTGTGTTGTGTAGTGTTGTGTTGTGCGTTATAATTAGCATTAGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCAAAGTCTTTCGCCGCAAGTCCTCATC--SizeHit CountTotal NormTotal
No Reads
droRho1
GCGCC-------------G--CA---TT-------GC------TGTTCGTCTG--------TGTTGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----T--GTGTAATTGC------CGCT---GTCATTGTTATTGC----------------------------------GATACGGATT-------------------------------------------------GTGTCGCTTCA----CTCTCTCCCGA-GT--GGC---------------------------TGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGTAAAGTCTTTCGCCGCAAGTCCTC-----SizeHit CountTotal NormTotal
No Reads
droFic1
A-GTTG--------CGCCG--CA---TT-------T----------TCGTTCGGTCGT--GTATCTGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----TGTGTGTAATTGT------GGCT---GTCATTGTTATTGCGAAGAGTGATTACCATTGCCATCGCTATTGC---GAT------T-------------------------------------GTGACTGTGACTGTGTCGCTTCAATCGCTCTCCC-CGA-GT--GGC---------------------------TGAGTG-TCGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGTAAAGTCTTCCGCCGCAAATCCTC-----SizeHit CountTotal NormTotal
No Reads
droKik1
CT----------------------------------C------CGTTCGTGTG---G-------CGTCGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCCGCTAGCCGAGTGCCCCAGTGTTTGGTGTTCAGTGTTCAGTGTTCATTGTTTAGTGCTCCGTGTGCTTTAGTGGCC-----A--GTGTAATTGT------CGCT---CTCAATCT-------------------------------------------------------------------------------------------------------------------CCCCTCCTGC--------------------------------GT-CGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCCATGTCTTTCGTCGCAAATCC-------SizeHit CountTotal NormTotal
No Reads
droAna3
GTCATT--------AGTCGTCC---GTC-------TCCATTATTGTGCGTGTG--------TAGTGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTACC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGGT---GTCATTGTTATTGT----------------------------TGCGGTGATAGCGTTT-------------------------------------------------CGGCCGCTTCA----CTCTCTCCCGA-GT--GGC---------------------------TGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCCGTGTCTTCCGCCGCAAATCCTC-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCCGTGTCTTCCGCCGCA............2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTGCCAAAATTCAGCCGTG........................2411.001100000
............................................GTGCGTGTG--------TAGTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droBip1
GTCATT--------AGT-C--C---GTC-------TCCATTATAGTGCGTGTG--------TGGTGGAGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGAC--CT-CAAGTGCC--------------------------------------------------------------------------G-----A--GTGTAATTGT------CGGT---GTCATTGTTATTGT----------------------------TGCGGTGATAGT---GTCGG-------------------TGT-----------------------CGGTCGCTTCA----CTCTCTCCCGA-GT--GGC---------------------------TGAGTG-TTGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGCTTGCCAAAATTCAGCCGTGTGTTCCGCCGCAAATCCTC-----SizeHit CountTotal NormTotal
No Reads
dp5
GGATC-------------G--C---GTC-------T------------G--TGTC------TGTTGAGGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGACCGCT-CAAGTGCT--------------------------------------------------------------------------T-----A--GCGTAATTGT------CATT---GTTA------T-----------ATTGTCATAGTTATTGCCATTGC---GATTCCGATTGCGGCACAGTGAGTGAGTGACTGAGTGAGTGACTCCG----------------------A----GTGTCGTCCGA-GT--GC---------C-----------G----TCTGAGTG-CAGT----------------------TTTATAATT------AGCTGAAATGCGCAATTGCTTGCCAAAACTCACGAATGTCTTTCGCCGCAAATCCTC-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................GACTCCG----------------------A----GTGTCGTCCGA-GT--GC---------C-----------G----T...............................................................................................................2612.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................CCG----------------------A----GTGTCGTCCGA-GT--GC---------.................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................ATAGTTATTGCCATTGC---GA....................................................................................................................................................................................................................................1911.0010100000000
..................G--C---GTC-------T------------G--TGTC------TGTTGAGGCTTATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................................................................................................................AAGTGCT--------------------------------------------------------------------------T-----A--GCGTAATTGT------C............................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................CATTGC---GATTCCGATTGCGGCACAGTGA................................................................................................................................................................................................................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................................AGTGAGTGACTGAGTGAGT..............................................................................................................................................................................................1920.5010000010000
droPer2
GGATC-------------G--C---GTC-------T------------G--TGTC------TGTTGAGGCTTATGCAAACA------ACTTGTTATTGATCT------------------------------AAGACATTGGACCGCT-CAAGTGCT--------------------------------------------------------------------------T-----A--GCGTAATTGT------CATT---GTTA------T-----------ATTGTCATAGTTATTGCCATTGC---GATTCCGATTGCGGCACAGTGAGTGAGTTACTGAGTGAGTGACTCCG---------A--GTGTCGTCCGA----GTGTCGTCCGA-GT--GT---------C-----------G----TCTGAGTG-CAGT----------------------TTTATAATT------AGCTGAAATGCGCAATTGCTTGCCAAAACTCACGAATGTCTTTCGCCGCAAATCCTC-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................GACTCCG---------A--GTGTCGTCCGA----GTGT........................................................................................................................................................2313.003300000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGA-GT--GT---------C-----------G----TCTGAGTG-CAGT----------------------TTT..........................................................................2813.003300000
.............................................................................................................................................................................................................................................................................................................................................................GTGACTCCG---------A--GTGTCGTCCGA----GT..........................................................................................................................................................2312.002000002
....C-------------G--C---GTC-------T------------G--TGTC------TGTTGAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
.............................................................................................................................................................................................................................................................................................ATTGTCATAGTTATTGCC..............................................................................................................................................................................................................................................1812.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGA-GT--GT---------C-----------G----TCTGAG..........................................................................................................1911.001001000
..ATC-------------G--C---GTC-------T------------G--TGTC------TGTTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................G--TGTC------TGTTGAGGCTTATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGCTGAAATGCGCAATTGC...........................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................GA-GT--GT---------C-----------G----TCTGAGTG-CA.....................................................................................................1811.001100000
....................................................................................................................................AAGACATTGGACCGCT-CAAGTGCT--------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................2411.001010000
.GATC-------------G--C---GTC-------T------------G--TGTC------TGTTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................GACTCCG---------A--GTGTCGTCCGA----GTGC........................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................CTCCG---------A--GTGTCGTCCGA----GTGT........................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................CG---------A--GTGTCGTCCGA----GTGTCGT.....................................................................................................................................................2120.501000010
.......................................................................................................................................................................................................................................................................................................................................................................................GTCCGA----GTGTCGTCCGA-GT--GG---------.................................................................................................................................2120.501100000
..........................................................................................................................................................................................................................................................................................................................................................................................CGA----GTGTCGTCCGA-GT--GT---------C-----------G----T...............................................................................................................2120.501000010
droWil2
-------------------------------------------------------------------------------CA------GCCTATTGTTGGTGT------------------------------AGGACATTGAAG--ATACGACTGGT--------------------------------------------------------------------------G-----A--CTTTG-----------CAGT---CCGATTGATATTGA----------------------------------GAT------T-------------------------------------------------------------------------GA-GT--GGG-------GC-----------G----TGTGAGTGTCCGT----------------------TTTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAATTTACAAATGTGTTCCGCTCGAAATCGTC-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................GAT------T-------------------------------------------------------------------------GA-GT--GGG-------GC-----------G----TGTGAGTGTC......................................................................................................2411.00100010
..........................................................................................................................................TTGAAG--ATACGACTGGT--------------------------------------------------------------------------G-----A--CT...........................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................GT---CCGATTGATATTGA----------------------------------GAT------T-------------------------------------------------------------------------GA-GT--............................................................................................................................................2411.00100010
........................................................................................................................................................................................................................................................................................................................AT------T-------------------------------------------------------------------------GA-GT--GGG-------GC-----------G----TGTGAGTGTC......................................................................................................2311.00100100
droVir3
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----A--GTGTTCTTT-TGTTGTTGTT---GATATTGATATTGT----------------------------------GAA-----------------------------------------------------------------------------------GT--AGCTTAGCG--------------G----TGTGAGTG-TTAT----------------------TGTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAA---------ATTTTTCGCACCAAATCATC-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................TTGT----------------------------------GAA-----------------------------------------------------------------------------------GT--AGCTTAGCG--------------G----TG..............................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................G--------------G----TGTGAGTG-TTAT----------------------TGTATA.......................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
TGC---------------------------------------------------------------------------------------------------------------------------------------------------GAGTGA--------------------------------------------------------------------------------------------------------------------------------------------------GTGTGC---GAG------T-------------------------------------GTG---------------------------------------------------A-----------G----TGTGAGTG-TTAT----------------------TGTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAA---------ATATTTCGCACCAAATCATCGT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGGACAATAATATGTGCCG--CAGTGCT---------------------TCTGTTTT-------TGCTGCTTACGCAAACGCTCTGCATTCGTTGTTGATGTTGTTGGTGTTGCTGTTGTTGCTGGCGTAGAAGGACATTTGGA--GTATAATAGACTATATGC---------A---------------------GT----------TTGAGCATC---------------GAGTCAA--GTGTTTTTGT------TGATGTGCCCATTGATATTGT----------------------------------GA----------------------------------------------------------------------------------A-GT--AGCCAAGCAGCG-----------CGCC-AGTGAGTG-TTAT----------------------TGTATAATT------AGCAGA-ATGCGCAATTGTTTGCCAAAA---------ATTTTTCGAACCAAATCGTCGTCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCAGCG-----------CGCC-AGTGAGTG-TTAT----------------------TG...........................................................................2911.00101

Generated: 05/18/2015 at 06:06 PM