ID:

dsi_14671

Coordinate:

2r:5436351-5436500 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5436501_5436585_-]; exon [2r_5436501_5437013_-]; intron [2r_5435525_5436500_-]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACTGCCTGAGTTCTTCGACAGCTTCGTGCAAAAGTGCACGGATCCCAGTTGTAAGTACATATGATGAAGGAGATTCTCTCTAAAAGTAACAATATTTATAGAAATATATATAAATAAGATTTAATGCAATCATGTTAGAAATTTTAAATGTTATAATAGTTTTAAGGTTGAGTACGGTTTTTAGTCAATGTAGTTTATATATAACTTTTTAACTATTATAACTTTTTAACTTTTAATAAGTAAATAAACG ************************************************((((((((((.(((((((((..((((.((.(((((((((((.((((((((........))))))))((((((...(((....)))...))))))....)))))).....))))).))..))))....)))))).)))))))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.......................................................................................................................................................................................................................................TTTAATAAGTAAATAAAC.	18	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................TGAGTACGGTATCTAGTGAAT.............................................................	21	3	3	0.67	2	0	2	0	0	0
......................................................................................TAACCATATTTATAGAAATATTTAAA..........................................................................................................................................	26	3	2	0.50	1	0	0	1	0	0
..............................................................................................................................................................................................................................TTTTGATCTTTTGATAAGTAAA......	22	3	6	0.17	1	0	0	0	1	0
.................................................................................................................................................................TGAAGATTGAGTACGGT........................................................................	17	2	19	0.05	1	0	0	0	0	1
..............................................................GATGAACGAGATTCCC............................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

TGACGGACTCAAGAAGCTGTCGAAGCACGTTTTCACGTGCCTAGGGTCAACATTCATGTATACTACTTCCTCTAAGAGAGATTTTCATTGTTATAAATATCTTTATATATATTTATTCTAAATTACGTTAGTACAATCTTTAAAATTTACAATATTATCAAAATTCCAACTCATGCCAAAAATCAGTTACATCAAATATATATTGAAAAATTGATAATATTGAAAAATTGAAAATTATTCATTTATTTGC ************************************************((((((((((.(((((((((..((((.((.(((((((((((.((((((((........))))))))((((((...(((....)))...))))))....)))))).....))))).))..))))....)))))).)))))))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	M023 head	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries
......................................................................................................................................................................CAACACATCCCAAAAATCAGGTA.............................................................	23	3	1	1.00	1	0	1	0	0	0	0	0
.......................................................................CTAATAGAGATTTTCGTTG................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0
.............................................................................................................................................................TCAAAATTCGAACTCA.............................................................................	16	1	10	0.40	4	4	0	0	0	0	0	0
.............................................................................................................................................................................................................AAAACTTGATAATATTTAATAATT.....................	24	3	3	0.33	1	1	0	0	0	0	0	0
.........CAAGAAGCTGTCGAAGT................................................................................................................................................................................................................................	17	1	3	0.33	1	0	0	0	1	0	0	0
............................................................................................................................................................ATCAAAATTCGAACTC..............................................................................	16	1	12	0.33	4	3	0	0	0	0	0	1
..............................................TCAACATTGATGTATA............................................................................................................................................................................................	16	1	7	0.29	2	2	0	0	0	0	0	0
...............................................................................................................................................................AAAATTCCAACTGATG...........................................................................	16	1	4	0.25	1	0	0	0	0	1	0	0
........TCAAGAAGTTGCCGAAGC................................................................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	0	1	0
....GGACTCGAGAAGCTGCC.....................................................................................................................................................................................................................................	17	2	9	0.11	1	0	0	0	1	0	0	0
..............................................................................AGATTATCATTGTTCTA...........................................................................................................................................................	17	2	19	0.05	1	0	0	0	1	0	0	0

Generated: 04/23/2015 at 02:41 PM