ID:

dsi_14650

Coordinate:

3r:17359172-17359433 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-35.7	-35.4	-35.4

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CAGCAGCAACTGCCACTAGTAGTAGCACTAGTAATAGTCACATTCATCAGGTGGGTCAGCTATCAACTCAAATCCCTCAAGCATGTAGCACAATAAAAAAATGCAATGGAAAATCAAAAAAAATATAATAATTCATTTAAAAAATGCAGAGTATTGCGATGCTCAATATTTTTATATGAATTTTTAAAATACTTGTGATCTTAATAAAATAATATTGATTTAAGAAAATCAAGCCATTAGAGTGAAATTTTTAAATGATATTTTCTCCAAGTGCAAGTGAACTTTTATTAACCCTCAACTTTGTCCACGCAGCACGACAGTGACAGCAACTCGAGCGCATCACTGCCCCACCACATCAGCGG ************************************************(((((.(((.............(((.....((((................))))...)))...............(((.(((((((.((((((.....((((((....))))))....)))))).))))))).)))...(((((((...(((........((((((.(((((((((..(((...........)))..)))))))))))))))......))).))))))).....................))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	O001 Testis	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis
.................................................................................................................................................................................................................................................................................................................................GACAGCAACTCGAGCGCATCACT..................	23	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................ACGACAGTGACAGCAACTCGAGCGCG.......................	26	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................CCATTAGAGTGAAATTTT...............................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCAAGTGCAAGTTAA.................................................................................	16	1	4	0.25	1	0	0	1	0	0	0
...........GCCCCTGGTAGTAGCA...............................................................................................................................................................................................................................................................................................................................................	16	2	20	0.15	3	0	0	0	0	3	0
..............................................................................................................AAATCAAAAAAAAGATAA..........................................................................................................................................................................................................................................	18	1	10	0.10	1	0	0	0	0	0	1
....................................................................................................................................................................................TTTTTAAAACACTTGTG.....................................................................................................................................................................	17	1	10	0.10	1	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................CTACTCAGAACGACAGTGA.......................................	19	3	13	0.08	1	0	0	1	0	0	0
..............................................................................................AAAAAATCGCAACGGAAAATCA......................................................................................................................................................................................................................................................	22	3	14	0.07	1	0	0	1	0	0	0
...................................................................................................................................................................................TTTTTTAAAACACTTGTGA....................................................................................................................................................................	19	2	19	0.05	1	0	0	0	1	0	0
......................................................................................................................................................................................TTTAAAACACTTGTG.....................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................ATATTTTCTCCTCGTGCA.......................................................................................	18	2	20	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

GTCGTCGTTGACGGTGATCATCATCGTGATCATTATCAGTGTAAGTAGTCCACCCAGTCGATAGTTGAGTTTAGGGAGTTCGTACATCGTGTTATTTTTTTACGTTACCTTTTAGTTTTTTTTATATTATTAAGTAAATTTTTTACGTCTCATAACGCTACGAGTTATAAAAATATACTTAAAAATTTTATGAACACTAGAATTATTTTATTATAACTAAATTCTTTTAGTTCGGTAATCTCACTTTAAAAATTTACTATAAAAGAGGTTCACGTTCACTTGAAAATAATTGGGAGTTGAAACAGGTGCGTCGTGCTGTCACTGTCGTTGAGCTCGCGTAGTGACGGGGTGGTGTAGTCGCC ************************************************(((((.(((.............(((.....((((................))))...)))...............(((.(((((((.((((((.....((((((....))))))....)))))).))))))).)))...(((((((...(((........((((((.(((((((((..(((...........)))..)))))))))))))))......))).))))))).....................))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries
......................................................................................................CGTTTCCTTATAGTTTTTTTTTTAT...........................................................................................................................................................................................................................................	25	3	6	0.50	3	0	2	0	0	1	0	0
....................................................................GTTTAGGGAGTTGGTA......................................................................................................................................................................................................................................................................................	16	1	3	0.33	1	1	0	0	0	0	0	0
.................................................................TGAGTTTAGGAAGTT..........................................................................................................................................................................................................................................................................................	15	1	19	0.32	6	0	6	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTATAAAAGAGGTT............................................................................................	15	0	4	0.25	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AAGAGGTTCAAGTACACTT.................................................................................	19	2	4	0.25	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................AGGTTCAAGTACACTTGACAA............................................................................	21	3	4	0.25	1	0	0	1	0	0	0	0
....................................................................................................................................................................................AAAAATTTTTTGAAGACTAG..................................................................................................................................................................	20	2	7	0.14	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GGTTCAAGTACACTTGACAA............................................................................	20	3	7	0.14	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AAATAGGTGCGTCGT................................................	15	1	7	0.14	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................GAGGTTCAAGTACACTTG................................................................................	18	2	7	0.14	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GCTCGCGTACTGACG................	15	1	8	0.13	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AGGTTCAAGTACACTTG................................................................................	17	2	17	0.12	2	0	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................TGAACATAATTGGGA...................................................................	15	1	15	0.07	1	1	0	0	0	0	0	0
................................................................................................................TAGTTTTTTTTACATTAAT.......................................................................................................................................................................................................................................	19	2	20	0.05	1	0	0	1	0	0	0	0
................................................................................................................TAGTTTTTTTGATATT..........................................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................CGTGACGGGATGTTGTAGT....	19	3	20	0.05	1	0	0	0	0	0	0	1
.................................................................................................................AGTTTTTTTGATATTA.........................................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	1	0	0

Generated: 04/23/2015 at 05:19 PM