ID:

dsi_14641

 Coordinate:

2l:2255117-2255266 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.2 -40.1 -40.0

Flybase annnotation

exon [2l_2255267_2255652_-]; five_prime_UTR [2l_2255267_2255652_-]; intron [2l_2252540_2255266_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCCTAAGATAGTGCTCAGTTTCATTGTCGAGAGATAAAGAAAACTGCAGGTGCACTTTGGCATGGAGTAAGGCTGACAAAATCGGATCTTGTCCCGCATTATCACCCGATTTATCAGCGCTTTAAAAGCCAAAACGGAGCAAAAATCGCGGTTCTTTGTTCTGCCTGTTTTGCGTCTTTAGTTATGAGAGAGTGCGGGTGTGTGGTGTGTGTGTATTTATCGGCAATCCGTTCTCTTATCGTGCAAGTT
**************************************************.(((((((((((.((((((...(((((..(((((((((..(((...)))..))...))))))).)))))))))))...)))).......((((((...((((.........))))...)))))).((((.......)))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 M025
embryo
 O002
Head
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.....................TCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 16 1 1 23.00 23 23 0 0 0 0 0 0 0 0 0 0 0
....................TTCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................TCTCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CTGACAAAATCGGATCTTGTC............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................GAGTAAGGCTGACAAAATCGG.................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTGTGGTGTGTGTGTATTTATCG........................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................CAATCCGTTCTCTTATCGTGC..... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................CATTGTCGAGAGATA..................................................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TATCGGCAATCCGTTCTCTTATCGTGC..... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........GGGATAAGTTTCATTGTCGAG.......................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................CAGTGTCGAGAGATA..................................................................................................................................................................................................................... 15 1 6 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCGGGTGTGTGGTGTGTGTGT................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................AGCTTCATTGTCGAGAG........................................................................................................................................................................................................................ 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................GTTTCCGTGTCGAGAGATA..................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................TGGAGAAAGCTGCAGGTGCACT................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.................AGCTTCATAGTCGAGAG........................................................................................................................................................................................................................ 17 2 10 0.40 4 0 1 3 0 0 0 0 0 0 0 0 0
....................ATCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0
...................TTACAGTGTCGAGAGATA..................................................................................................................................................................................................................... 18 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0
..................GTTTCATCGTCGAGAG........................................................................................................................................................................................................................ 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGCATTCCGTTCTCTTTTCGTG...... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
....................CTCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................ATTGTCGAGAGATATCG.................................................................................................................................................................................................................. 17 2 13 0.31 4 4 0 0 0 0 0 0 0 0 0 0 0
....................TTTAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 19 0.26 5 5 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TCCCGCATTATGTCCCGACT.......................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................TCTCCCGCATTATGTCCCGA............................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
.................AGTTTCATAGTCGAG.......................................................................................................................................................................................................................... 15 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
......................CATTGTCGAGAGATATCG.................................................................................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...................TTTCATCGTCGAGAG........................................................................................................................................................................................................................ 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
....................TTCTGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
....................TCCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.................AGTTTCATCGTCGAGAGG....................................................................................................................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
.................TGTTGCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 20 3 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCTTCTGCCTGATTTGCTTCTT....................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
.................AGTTTCATCGTCGAG.......................................................................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
.................AGTGCCATGGTCGAGAGATA..................................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCGGGCGTGTCGTGTGGGTGT................................... 21 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
...............TAAGCTTCATCGTCGAGAG........................................................................................................................................................................................................................ 19 3 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0
....................GTCAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
......................CAGTGTCGAGAGATATCGAA................................................................................................................................................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATGCCTGTTTAGCGTCATT...................................................................... 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
..................GCTTCATTGTCGAGA......................................................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
....................TACAGTGTCGAGAGATA..................................................................................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
................AAGCTTCATTGTCGAGA......................................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
..................GGTTCCATGTCGAGAGATA..................................................................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCCGGTGTGTGGTGTGT....................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...................GTACAGTGTCGAGAGATA..................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TTAGTGTCGAGAGATA..................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............TAAGTTTCATCGTCGA........................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACGGATTCTATCACGAGTCAAAGTAACAGCTCTCTATTTCTTTTGACGTCCACGTGAAACCGTACCTCATTCCGACTGTTTTAGCCTAGAACAGGGCGTAATAGTGGGCTAAATAGTCGCGAAATTTTCGGTTTTGCCTCGTTTTTAGCGCCAAGAAACAAGACGGACAAAACGCAGAAATCAATACTCTCTCACGCCCACACACCACACACACATAAATAGCCGTTAGGCAAGAGAATAGCACGTTCAA
**************************************************.(((((((((((.((((((...(((((..(((((((((..(((...)))..))...))))))).)))))))))))...)))).......((((((...((((.........))))...)))))).((((.......)))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...................................................................................................................................................................CGGACAAGACGCAGAAATCAA.................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AATAGCCGTTAGGCAAGAGAATAGCAC...... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
..........TCACGAGTCAAAGTAACAGCT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................TAGCCTAGAACAGGGCGTAA..................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................TGGGCTAAATAGTCGCGAAAT............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................ATAAATAGCCGTTAGGCAAGA............... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................ACAAGGCGGACAAAACGCAGA........................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................TTTGGCGTCAAGAAGCAAGAC...................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TAGGCAAGAGAAGAGCACTT.... 20 2 6 0.33 2 0 1 0 0 0 1 0 0
..................................................................................................TAAGAGTGGGCAAAATAG...................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................TCAGGCAAGAGAAGAGCACTT.... 21 3 6 0.33 2 0 2 0 0 0 0 0 0
..........................................................................................AGAGGGCGTAATACAGGGCT............................................................................................................................................ 20 3 4 0.25 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................ATAGGCAAGAGAAGAGCACTT.... 21 3 6 0.17 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTAGGCAAGAGAAAAGCACTT.... 21 2 7 0.14 1 0 0 1 0 0 0 0 0
............................................................................................AGGGCGTAATACAGGGCTG........................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0 0
...........CAAGATTGAAAGTAACAGC............................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................................AGTGGGCTCAAGAGTC.................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:2255067-2255316 - dsi_14641 TGC-CTAAGAT-AGTGCTCAG--TTTCATTGTCGAGA-GATAAAGAA----AACTGC-----AGGTGC---------------------ACT----TT-G---GCATGGAGTAAGGCTGACAAAATCGGATCTTGTCCCGCAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTAAAAGCCAA-AACGGAGCAAAAAT-CG--CGGTTCTTTGTTCT-GCC---TGTTTTGCGTCTTTAGTTAT--------------GAGAGA--GTGCGGG------------TGT--------GTGGTGTGTGTGTATTTATCGGCAATCCGTTC--------TCTTATCG---TGCAAGTT---
droSec2 scaffold_5:535712-535961 - TGC-CTAAGAT-AGTGCTCAG--TTTCATTGTCAAGA-GATAAAGAA----AACTGC-----AGGTGC---------------------ACT----TT-G---GCATGGAGTAAGGCTGACAAAATCGGATCTTGTCCCGCAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTAAGAGCCAA-AACGGAGAAAAAAT-CG--CGGTTCTTTGTTCC-GCC---TGTTTTGCGTCTTTACTTAT--------------GAGAGA--GTGCGGG------------TGT--------GTGGTGTGTGTGTATTTATCGGCAATCCGTTC--------TCTTATCG---TGCAAGTT---
dm3 chr2L:2364111-2364363 - GGC-CTAAGAT-AGTTCACGA-ATCTAATTGTGAAGA-GATAAAGAA----CACTGC-----AGGTGC---------------------ACT----CT-G---GTATGGAGTAAAGCTGGCAAAATCGGATCTTGGCCCGCAT----------------------TATCACCCAA-TT--TATCAGCGCT--TTACACGCCAA-AACGGATCAAAAAT-CG--CGGTTCTTTGTTCC-GCC---TGTTTTGCGTCTTTAGTTAT--------------GAGAGAGAGTGTGGG------------TGT--------GTGGTGTGTGTGTATTTATCGGCAATCCGTTC--------CCTTATCG---TGCAAGTT---
droEre2 scaffold_4929:2403431-2403676 - GGT-CTGAGAT-TCTGCTTGA-ATTTCATTATCGAGT-GATAAAGAA----CTCTGC-----AGGTGC---------------------ACT----TG-A---GCATGGAGTAAAGCTGACAAAATCGGATCTTGGT-CTCAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTATCCGCCAG-AATGGAGCAAAAAT-CG--CGGTTCTTTGTTCA-GCC---TGTTTTGCGTCTTTAGTTAT--------------GAGAGA--GTGCGG---------------------------GTGTGTGTGTATTTATCGGCAATCCGTTC--------TCTTATCG---TACAAGTTTTT
droYak3 2L:2346549-2346798 - GGT-CTTAGAT-AGTGCTCGA-ATTTCATTGTCGGGG-GATAAAGAA----CACTGC-----AGGTGC---------------------ACT----TT-G---GCATGGAGTAATGCGGACAAAATCGGATCTTGGTCCGTAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTAACCGCCAG-AACAGAGCAAAAAT-CG--TGGTTCTTTGTTCA-GCC---TGTTTTGCGTCTTTAGTTAG--------------GAGAGA--ATGCGGG------------TGT--------GT-ATGTGTGTGTATTTATCGGCAATTCGTTC--------TCTTATCG---TGCAAGTT---
droEug1 scf7180000409554:4160091-4160338 - TAA-CTAAAAT-AGTGCTCAA-TTTTCATTGTTAAGA-GATAAAGAA-----ACTGC-----AGGTGC---------------------ACC----GTGG---GCTTGGAATAAAGCTGATCCAAACTGATC--GGTCTGCAT----------------------TATCACACGA-TT--TATTAGGGTT--TTAACCGCTCC-AAAGAAAAGAATAT-AA--CGGTTCTTTGTTCT-GCT---TGTTTTGCGTCTTAATTAAA--------------GA--GA--GTTCGGT------------TGT------GTTA-GTGTGTGTGTATTTATCTGCAATACGTTT--------TCTTATCA---TACAAGTC---
droBia1 scf7180000302261:138994-139253 - CGG-CTGGAGC-AGTGCTGGA-TTTCCATTGTGGCCA-GATAAAGAG----AACTGC-----AGGTGC---------------------ACTGGACTG-A---GCCTGGAACAAAGCTGATCGATTTGGATC--GGCTCTCAT----------------------TATCGCTCCA-TT--TTTTAGGGCC--ATAAACGCCTGGAAGGGAGCTTAAGT-TG--CGATTCTTTGTTCCAGCT---TGTTTTGCGTCTTAATTAAC--------------GA--GA--GTGCGGG------------TGTGTGTGTCTAC-GTGTGTGTGTACTTATCCGCAATCCGTTT--------TCTTATCG---TCCAAGTC---
droTak1 scf7180000413208:63644-63883 - TGG-CTCGAAA-AGTGCTCGA-TTTCCATTGTTGGGT-GATAAAGAG-----ACTGC-----AGGTGC---------------------AAT----G--G---GCTTGGAATATAGCTGACCGAACTCGATC--GGTGCCCAT----------------------TATCACCCGA-TT--TATTAGGGCT--TTAATCGCCTG-AATGGAGCGAAAGT-TG--CGGTTCTTTGTTCCAGCGTTTTGATTTGCGTCTTAATTCAT--------------GA--CA--GTGCGG-----------------------------GTGTGTGTATTTATCTGCAATCCATTT--------TCTTATCG---TCCATGTC---
droEle1 scf7180000491273:877902-878152 + AGG-TTAAAAT-AGTGCATGT-TTCTCATTGTTGGGA-GATAAAGAA-----AATGC-----AGGTGC---------------------ACT----T--G---GAATGGAATAAAGCTGATCGTTTCGGATC--GGTCCCCAT----------------------TATCATTCGA-TT--TTTACGGGCT--TTAACCGCCTG-AATGGAGCGAAATT-TG--CCCTTCTTTGTTCA-GCT---TGTTTTGCGTCTTAATTATT--------------AA--GA--GTGCGGG--TGTCTGC----------GGGTGG-ATGTGTGTGTATTTATCTGCAATCCGT-T--------CCTTATCG---TACCAGTC---
droRho1 scf7180000779970:22714-22968 - AGA-CTTAAAT-AGTGCTCGC-TTCTCATTGTTGA-------AAGAA-----TTTGC-----AGGTGC---------------------ACT----CT-----GAATGGAATAATGCTGATCGTTTCAGATC--GGTCCCCAT----------------------TATCACTTTA-TT--TATTAGGGCT--TTAACTGTCTG-AATGGAGAGAAAAT-TG--CCCTTCTTTGTTCA-GCT---TGTTTTGCGTCTTAATTATT--------------AA--GA--GTGCGGG--TGCCTGCGTGTGTGTGTGTGTGT-GTGTGTGTGTATTTATCTCCAATCCGT-T--------TCTTATCG---TACCAGTC---
droFic1 scf7180000453924:276853-277093 - CAA-CTAAAAT-AGTGCTCGA-TTGT-CTTGTTAAAA-GATAAAGAA-----ATTGC-----AGGTGC---------------------ACT----G--G---GCTTCACATAAAGCTGATCA-GTCGGATC--GGTCCCCAT----------------------TATCAGTTGA-TT--TATCAGGGCT--TTAACCGCATA-ACTAAGACGAAAAT-CA--TTCTTCTTTGTTCC-GCT---TGTTTTGCGTCTTAAAAATT--------------AAGAGA--GTGCT--------------TGT--------GT-ATGTGTTTGTATTTATCTGCAATCCGT-T--------TCTTATCG---TGCCAGTC---
droKik1 scf7180000302408:640864-641127 - AAGGCGGAA-TAAGTGTT-------------TTGAGC-GATAAAAAT--TGCAATGC-----AGGTGCACCCAGTAC-----------------A-CT-G---ATGTGTTATAAA-----GAAAAACGGTTC--GGTTTTTAT----------------------TATCTCGCGCTTTATTATTAGGGTC--TTAATCGGTTG-AATGGAGCGGAATT-GG--CCGTTCTTTGTTCA-GAT---TGTTTTGCGTCTTAATTAAT--------------GAGTAAATGT--GTGTGTGTGTGCGGGAGTGTTTGAGTGT-GTGTCTGTGCATTTATCTTCAATCCCGTT--------TCTTATCG---TGCCAGTC---
droAna3 scaffold_12916:6092257-6092509 + TTTACCAAA----GT--T-GA-AT--------TAAAA-AAGAAAAAAATTGCAATGC-----AGGTGT---------------------ATG----AA-GGCAAAGTGGAATAACTCAGTTCAGTTTCAAAC--TGGCCTCTT----------------------TATCACCTCCAATAATAATGGGGCT--TTAGCCGTCTG-GAGGGAGCGAGGGA-TG--CGGTTCTTTGTTCA-GCT---TATTTTGCGTCTTAATTAAT--------------GTGTCACAGT--GGCTCTCT--CA--GTGT--------GT-GTGTGTGTGTATTTATCTGCAATCCCGTT--------TCTTATCG---TGCCAGTC---
droBip1 scf7180000396568:747838-748088 - AGT-TTACAAA-AGT----------TAAATGTAAAAA-ATAAAATTG----CAATGC-----AGGTGT---------------------ATG----AA-GGCAAAATGGAATAGCTCAGTTCGGTTTCAAAC--TGGCCCCTT----------------------TATCACCTCCAATAATAATGGGGCT--TTAGCCGTCTG-GAGGGAGTGAGGGA-TG--CGGTTCTTTGTTCA-GCT---TATTTTGCGTCTTAATTAAT--------------GTGTCACAGTGT--CTCTGT--------GT----GTGTCA-GTGTGTGTGTATTTATCTGCAATCCCGTT--------TCTTATCG---TGCCAG-----
dp5 4_group3:4029855-4030082 + TAG-CGCAA-TAAA---TCAGTTTCCCATTTTCGCGACTATAAAGCC-----AGTGCAACACAGGTGT---------------------AGG----A------------GAGGCAGCTGATCC----------GGGGTCTCAT----------------------TATCTGTCGA-ATAAT--ATGTACTCTTT-CCCGC-TC-CAGGCAATGGAAATTGC--TTGTTCTTTGTTCT-ACT--TGGTTTTGCGTCTTAATTACA----------------------GTGTG--------------TGT--------GT-GTTTGTGTGTATTTATCTGCAATCCGT-T--------TCTTATCG---TGCCAGTC---
droPer2 scaffold_1:5502679-5502906 + TAG-CGCAA-TAAA---TCAGTTTCCCATTTTCGCGACTATAAAGCC-----AGTGCAACACAGGTGT---------------------AGG----A------------GAGGCAGCTGATCC----------GGGGTCTCAT----------------------TATCTGTCGA-ATAAT--ATGTACTCTTT-CCCGC-TC-CAGGCAATGGAAATTGC--TTGTTCTTTGTTCT-ACT--TGGTTTTGCGTCTTAATTACA----------------------GTGTG--------------TGT--------GT-GTTTGTGTGTATTTATCTGCAATCCGT-T--------TCTTATCG---TGCCAGTC---
droWil2 scf2_1100000004521:2347867-2348097 - TGT-CTCAGAT-TGTGCAAAA--TCAAATT---AGAG-TATAAAGTA-----TATAT----------------------------------------------------AAAAAAGGTTGTCGCTGCTAATA--AAAATCCATTGTTATCTGGGACATATCTGATTATATTGCAT-TCTAT--A-----------------TA-TACAAAATACTAAT-TGGCCTGGTCTTTGTTCT-TAA---CGTTTTGCGTCTTAATTTCT--------------GTGTGT--------------------------------GT-ACTATTTTGTTATTATCTATAAACCATTTGCTGCCTGCCTTATCG---TGCCAGT----
droVir3 scaffold_12963:13829356-13829622 - AGC-GCAATA--AATG---TGCGCACTTGTTTTGCAT-GATAACCGA-----AGGGCAATATAGCTGTGAATAATACAATTACAGGTGCGCG----ACAG---TCAAAGGCCCAGACT----------------GGTAATCAG----------------------TAATCGGCAA-AGCCT--TGTTACTCTTA-GCCAG-TT-TA-------------CC--TTATTCATTGTTCTTTCG---CTTTTTGCGTCTTTAAATATGGAGCTCTTTCTGCGA--TT--GTGTATG------------TGTGTGTGTGTAT-GTGTTTGCGGATTTATCTACAATC-GT-C--------GCTTATCGGTATGCCAGCT---
droMoj3 scaffold_6500:5825375-5825465 + TGC-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTATGTATGTGT--------------GTGTGTGAATAT--TTGTTT--GT--TTGT--------GT-GTGTTTACGGATTTATCTACAATCG-T-T--------GCTTATCGTCATGCCAGCT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGC-CTAAGAT-AGTGCTCAG--TTTCATTGTCGAGA-GATAAAGAA----AACTGC-----AGGTGC---------------------ACT----TT-G---GCATGGAGTAAGGCTGACAAAATCGGATCTTGTCCCGCAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTAAAAGCCAA-AACGGAGCAAAAAT-CG--CGGTTCTTTGTTCT-GCC---TGTTTTGCGTCTTTAGTTAT--------------GAGAGA--GTGCGGG------------TGT--------GTGGTGTGTGTGTATTTATCGGCAATCCGTTC--------TCTTATCG---TGCAAGTT---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................CTGACAAAATCGGATCTTGTC.................................................................................................................................................................................................................................................2111.00100000000000010000
............................................................................................................GAGTAAGGCTGACAAAATCGG.........................................................................................................................................................................................................................................................2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................GT--------GTGGTGTGTGTGTATTTATCG.........................................2311.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................................CAATCCGTTC--------TCTTATCG---TGC........2111.00100000000100000000
..........................CATTGTCGAGA-GATA................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................TATCGGCAATCCGTTC--------TCTTATCG---TGC........2711.00100100000000000000
................................................................................................................................................................................................................................................................................................GCGGG------------TGT--------GTGGTGTGTGTGT.................................................2111.00100000000000100000
droSec2
TGC-CTAAGAT-AGTGCTCAG--TTTCATTGTCAAGA-GATAAAGAA----AACTGC-----AGGTGC---------------------ACT----TT-G---GCATGGAGTAAGGCTGACAAAATCGGATCTTGTCCCGCAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTAAGAGCCAA-AACGGAGAAAAAAT-CG--CGGTTCTTTGTTCC-GCC---TGTTTTGCGTCTTTACTTAT--------------GAGAGA--GTGCGGG------------TGT--------GTGGTGTGTGTGTATTTATCGGCAATCCGTTC--------TCTTATCG---TGCAAGTT---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................AGGTGC---------------------ACT----TT-G---GCATGGAGT..........................................................................................................................................................................................................................................................................2112.0020011
................CTCAG--TTTCATTGTCAAGA-G...................................................................................................................................................................................................................................................................................................................................................2011.0010100
................................................................GTGC---------------------ACT----TT-G---GCATGGAGTAAGGCT....................................................................................................................................................................................................................................................................2511.0011000
.................................................................................................................................................................................................................................................................................................................................................GCAATCCGTTC--------TCTTATCG---TG.........2111.0011000
.........................................................................................................................................................................................................................................................TGCGTCTTTACTTAT--------------GAGAG...............................................................................................2011.0010100
..........T-AGTGCTCAG--TTTCATTGTC.........................................................................................................................................................................................................................................................................................................................................................2011.0010100
dm3
GGC-CTAAGAT-AGTTCACGA-ATCTAATTGTGAAGA-GATAAAGAA----CACTGC-----AGGTGC---------------------ACT----CT-G---GTATGGAGTAAAGCTGGCAAAATCGGATCTTGGCCCGCAT----------------------TATCACCCAA-TT--TATCAGCGCT--TTACACGCCAA-AACGGATCAAAAAT-CG--CGGTTCTTTGTTCC-GCC---TGTTTTGCGTCTTTAGTTAT--------------GAGAGAGAGTGTGGG------------TGT--------GTGGTGTGTGTGTATTTATCGGCAATCCGTTC--------CCTTATCG---TGCAAGTT---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................GAGAGAGTGTGGG------------TGT--------GT............................................................1824.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGG------------TGT--------GTGGTGTGTGTG..................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TGTGTATTTATCGGCAATCCG.................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................AATTGTGAAGA-GATAAAGAA----.......................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GTATTTATCGGCAATCCGTTC--------......................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AGAGAGAGTGTGGG------------TGT--------GTGG..........................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000010000000000000000000000000000
...................................................................................................................GCTGGCAAAATCGGATCT.....................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AGCTGGCAAAATCGGATCTTGG..................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000
.....................................................................................................................TGGCAAAATCGGATCTTGGCCC...............................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................AATTGTGAAGA-GATAAAGAA----CA.....................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
.................................AAGA-GATAAAGAA----CACTG..................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................T--------GTGGTGTGTGTGTATTTATC..........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................TTGCGTCTTTAGTTAT--------------GAGAG...............................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010
.......................................................................................................................................................................................................................................................TTTGCGTCTTTAGTTAT--------------GAGA................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................TTCC-GCC---TGTTTTGCGTCTTT........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AGAGTGTGGG------------TGT--------GTGGTGTGTGTGT.................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................TGTTTTGCGTCTTTAGTTAT--------------G...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGA-GATAAAGAA----CACTGC-----AGG.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATTGTGAAGA-GATAAAGA............................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCCAA-AACGGATCAAAAAT-CG--...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................CTGGCAAAATCGGATCTTGGC.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GTGGG------------TGT--------GTGGTGTGTGTGT.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...............................................................................................................................................................................................................................................................TTTAGTTAT--------------GAGAGAGAG...........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AGTTAT--------------GAGAGAGAGTGTG.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................CAAAATCGGATCTTGGCCCGC.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................AT--------------GAGAGAGAGTGTGGG------------TG.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................TGGCAAAATCGGATCTTGGCC................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AGAGAGTGTGGG------------TGT--------GTGGTGTGT.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGCGTCTTTAGTTAT--------------GAGAGA..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.............................TGTGAAGA-GATAAAGAA----CACT...................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................GTTAT--------------GAGAGAGAGTGTGGG------------T........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................ATAAAGAA----CACTGC-----AGGTGC---------------------A................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TAGTTAT--------------GAGAGAGAGTGTGG......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................CTGC-----AGGTGC---------------------ACT----CT-G---GTATGG.............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................AT--------------GAGAGAGAGTGTGGG------------TGT--------..............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGG------------TGT--------GTGGTGTGTGTGT.................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................GTTCC-GCC---TGTTTTGCGT............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AATTGTGAAGA-GATAAAGA............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................AA----CACTGC-----AGGTGC---------------------ACT----CT-G---G..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................CC-GCC---TGTTTTGCGTCTTTAG......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................TAT--------------GAGAGAGAGTGTGGG------------TGT--------..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........GAT-AGTTCACGA-ATCTAATTG...........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTAT--------------GAGAGAGAGTGTGGG------------TG.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTGAAGA-GATAAAGAA----CACTG..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................TCTTTGTTCC-GCC---TGTTTTGC..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATCTAATTGTGAAGA-GATAAAGAA----.......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................GATAAAGAA----CACTGC-----AGGTGC---------------------.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GAGAGAGAGTGTGGG------------TGT--------GT............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................CAAAAAT-CG--CGGTTCTTTGTTCC-GC..........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ACTGC-----AGGTGC---------------------ACT----CT-G---GTATGGA............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................GCC---TGTTTTGCGTCTTTAGTT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GC---------------------ACT----CT-G---GTATGGAGTA.........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GTTCC-GCC---TGTTTTGCGTCTTT........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................GA-ATCTAATTGTGAAGA-GATA................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CGTTC--------CCTTATCG---TGCAAGTT---2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ATCTTGGCCCGCAT----------------------TATCACC..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTGTGAAGA-GATAAAGAA----CACT...................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AT--------------GAGAGAGAGTGTGGG------------TGT--------GTG...........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTTTGCGTCTTTAGTTAT--------------GAGAGAGAG...........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................ATCAAAAAT-CG--CGGTTCTTTGT................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AGCTGGCAAAATCGGATCTTGC..................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................TGTGGG------------TGT--------GTGGTGTGTGTG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGC-----AGGTGC---------------------ACT----CT-G---GTATG..............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGT-CTGAGAT-TCTGCTTGA-ATTTCATTATCGAGT-GATAAAGAA----CTCTGC-----AGGTGC---------------------ACT----TG-A---GCATGGAGTAAAGCTGACAAAATCGGATCTTGGT-CTCAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTATCCGCCAG-AATGGAGCAAAAAT-CG--CGGTTCTTTGTTCA-GCC---TGTTTTGCGTCTTTAGTTAT--------------GAGAGA--GTGCGG---------------------------GTGTGTGTGTATTTATCGGCAATCCGTTC--------TCTTATCG---TACAAGTTTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................TC--------TCTTATCG---TACAAGTTTT.2011.0011000000
..........................................................................................................................................................................................CGCT--TTATCCGCCAG-AATGGAGC......................................................................................................................................................................2311.0010100000
..........................................................................................................................................................................................................................................................................................GA--GTGCGG---------------------------GTGTGTGTGT.................................................1820.5010000100
droYak3
GGT-CTTAGAT-AGTGCTCGA-ATTTCATTGTCGGGG-GATAAAGAA----CACTGC-----AGGTGC---------------------ACT----TT-G---GCATGGAGTAATGCGGACAAAATCGGATCTTGGTCCGTAT----------------------TATCACCCGA-TT--TATCAGCGCT--TTAACCGCCAG-AACAGAGCAAAAAT-CG--TGGTTCTTTGTTCA-GCC---TGTTTTGCGTCTTTAGTTAG--------------GAGAGA--ATGCGGG------------TGT--------GT-ATGTGTGTGTATTTATCGGCAATTCGTTC--------TCTTATCG---TGCAAGTT---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................GTATTTATCGGCAATTCGTTC--------......................2111.00101000000000
......................................................................................................................GACAAAATCGGATCTTGGTC................................................................................................................................................................................................................................................2011.00100000010000
........................TTCATTGTCGGGG-GATAAAGAA----CACTGC-----............................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEug1
TAA-CTAAAAT-AGTGCTCAA-TTTTCATTGTTAAGA-GATAAAGAA-----ACTGC-----AGGTGC---------------------ACC----GTGG---GCTTGGAATAAAGCTGATCCAAACTGATC--GGTCTGCAT----------------------TATCACACGA-TT--TATTAGGGTT--TTAACCGCTCC-AAAGAAAAGAATAT-AA--CGGTTCTTTGTTCT-GCT---TGTTTTGCGTCTTAATTAAA--------------GA--GA--GTTCGGT------------TGT------GTTA-GTGTGTGTGTATTTATCTGCAATACGTTT--------TCTTATCA---TACAAGTC---SizeHit CountTotal NormTotal
No Reads
droBia1
CGG-CTGGAGC-AGTGCTGGA-TTTCCATTGTGGCCA-GATAAAGAG----AACTGC-----AGGTGC---------------------ACTGGACTG-A---GCCTGGAACAAAGCTGATCGATTTGGATC--GGCTCTCAT----------------------TATCGCTCCA-TT--TTTTAGGGCC--ATAAACGCCTGGAAGGGAGCTTAAGT-TG--CGATTCTTTGTTCCAGCT---TGTTTTGCGTCTTAATTAAC--------------GA--GA--GTGCGGG------------TGTGTGTGTCTAC-GTGTGTGTGTACTTATCCGCAATCCGTTT--------TCTTATCG---TCCAAGTC---SizeHit CountTotal NormTotal
No Reads
droTak1
TGG-CTCGAAA-AGTGCTCGA-TTTCCATTGTTGGGT-GATAAAGAG-----ACTGC-----AGGTGC---------------------AAT----G--G---GCTTGGAATATAGCTGACCGAACTCGATC--GGTGCCCAT----------------------TATCACCCGA-TT--TATTAGGGCT--TTAATCGCCTG-AATGGAGCGAAAGT-TG--CGGTTCTTTGTTCCAGCGTTTTGATTTGCGTCTTAATTCAT--------------GA--CA--GTGCGG-----------------------------GTGTGTGTATTTATCTGCAATCCATTT--------TCTTATCG---TCCATGTC---SizeHit CountTotal NormTotal
No Reads
droEle1
AGG-TTAAAAT-AGTGCATGT-TTCTCATTGTTGGGA-GATAAAGAA-----AATGC-----AGGTGC---------------------ACT----T--G---GAATGGAATAAAGCTGATCGTTTCGGATC--GGTCCCCAT----------------------TATCATTCGA-TT--TTTACGGGCT--TTAACCGCCTG-AATGGAGCGAAATT-TG--CCCTTCTTTGTTCA-GCT---TGTTTTGCGTCTTAATTATT--------------AA--GA--GTGCGGG--TGTCTGC----------GGGTGG-ATGTGTGTGTATTTATCTGCAATCCGT-T--------CCTTATCG---TACCAGTC---SizeHit CountTotal NormTotal
No Reads
droRho1
AGA-CTTAAAT-AGTGCTCGC-TTCTCATTGTTGA-------AAGAA-----TTTGC-----AGGTGC---------------------ACT----CT-----GAATGGAATAATGCTGATCGTTTCAGATC--GGTCCCCAT----------------------TATCACTTTA-TT--TATTAGGGCT--TTAACTGTCTG-AATGGAGAGAAAAT-TG--CCCTTCTTTGTTCA-GCT---TGTTTTGCGTCTTAATTATT--------------AA--GA--GTGCGGG--TGCCTGCGTGTGTGTGTGTGTGT-GTGTGTGTGTATTTATCTCCAATCCGT-T--------TCTTATCG---TACCAGTC---SizeHit CountTotal NormTotal
No Reads
droFic1
CAA-CTAAAAT-AGTGCTCGA-TTGT-CTTGTTAAAA-GATAAAGAA-----ATTGC-----AGGTGC---------------------ACT----G--G---GCTTCACATAAAGCTGATCA-GTCGGATC--GGTCCCCAT----------------------TATCAGTTGA-TT--TATCAGGGCT--TTAACCGCATA-ACTAAGACGAAAAT-CA--TTCTTCTTTGTTCC-GCT---TGTTTTGCGTCTTAAAAATT--------------AAGAGA--GTGCT--------------TGT--------GT-ATGTGTTTGTATTTATCTGCAATCCGT-T--------TCTTATCG---TGCCAGTC---SizeHit CountTotal NormTotal
No Reads
droKik1
AAGGCGGAA-TAAGTGTT-------------TTGAGC-GATAAAAAT--TGCAATGC-----AGGTGCACCCAGTAC-----------------A-CT-G---ATGTGTTATAAA-----GAAAAACGGTTC--GGTTTTTAT----------------------TATCTCGCGCTTTATTATTAGGGTC--TTAATCGGTTG-AATGGAGCGGAATT-GG--CCGTTCTTTGTTCA-GAT---TGTTTTGCGTCTTAATTAAT--------------GAGTAAATGT--GTGTGTGTGTGCGGGAGTGTTTGAGTGT-GTGTCTGTGCATTTATCTTCAATCCCGTT--------TCTTATCG---TGCCAGTC---SizeHit CountTotal NormTotal
No Reads
droAna3
TTTACCAAA----GT--T-GA-AT--------TAAAA-AAGAAAAAAATTGCAATGC-----AGGTGT---------------------ATG----AA-GGCAAAGTGGAATAACTCAGTTCAGTTTCAAAC--TGGCCTCTT----------------------TATCACCTCCAATAATAATGGGGCT--TTAGCCGTCTG-GAGGGAGCGAGGGA-TG--CGGTTCTTTGTTCA-GCT---TATTTTGCGTCTTAATTAAT--------------GTGTCACAGT--GGCTCTCT--CA--GTGT--------GT-GTGTGTGTGTATTTATCTGCAATCCCGTT--------TCTTATCG---TGCCAGTC---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................GCAATGC-----AGGTGT---------------------ATG----AA-GGC....................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................A--GTGT--------GT-GTGTGTGTGTA................................................18200.102100001
............................................................................................................................................................................................................................................................................................................CA--GTGT--------GT-GTGTGTGTGT.................................................18200.051000001
droBip1
AGT-TTACAAA-AGT----------TAAATGTAAAAA-ATAAAATTG----CAATGC-----AGGTGT---------------------ATG----AA-GGCAAAATGGAATAGCTCAGTTCGGTTTCAAAC--TGGCCCCTT----------------------TATCACCTCCAATAATAATGGGGCT--TTAGCCGTCTG-GAGGGAGTGAGGGA-TG--CGGTTCTTTGTTCA-GCT---TATTTTGCGTCTTAATTAAT--------------GTGTCACAGTGT--CTCTGT--------GT----GTGTCA-GTGTGTGTGTATTTATCTGCAATCCCGTT--------TCTTATCG---TGCCAG-----SizeHit CountTotal NormTotal
No Reads
dp5
TAG-CGCAA-TAAA---TCAGTTTCCCATTTTCGCGACTATAAAGCC-----AGTGCAACACAGGTGT---------------------AGG----A------------GAGGCAGCTGATCC----------GGGGTCTCAT----------------------TATCTGTCGA-ATAAT--ATGTACTCTTT-CCCGC-TC-CAGGCAATGGAAATTGC--TTGTTCTTTGTTCT-ACT--TGGTTTTGCGTCTTAATTACA----------------------GTGTG--------------TGT--------GT-GTTTGTGTGTATTTATCTGCAATCCGT-T--------TCTTATCG---TGCCAGTC---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................TAAAGCC-----AGTGCAACACAGGTGT---------------------AGG----..........................................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................AGGCAGCTGATCC----------GGGGTC...............................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................GTTCTTTGTTCT-ACT--TGGTTTTGCG.............................................................................................................................2511.0010100000000
............................TTTTCGCGACTATAAAAT............................................................................................................................................................................................................................................................................................................................................18140.0710000100000
droPer2
TAG-CGCAA-TAAA---TCAGTTTCCCATTTTCGCGACTATAAAGCC-----AGTGCAACACAGGTGT---------------------AGG----A------------GAGGCAGCTGATCC----------GGGGTCTCAT----------------------TATCTGTCGA-ATAAT--ATGTACTCTTT-CCCGC-TC-CAGGCAATGGAAATTGC--TTGTTCTTTGTTCT-ACT--TGGTTTTGCGTCTTAATTACA----------------------GTGTG--------------TGT--------GT-GTTTGTGTGTATTTATCTGCAATCCGT-T--------TCTTATCG---TGCCAGTC---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................AGTTTCCCATTTTCGCGACTA..................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................................................GTG--------------TGT--------GT-GTTTGTGTGTA................................................19200.153000003
droWil2
TGT-CTCAGAT-TGTGCAAAA--TCAAATT---AGAG-TATAAAGTA-----TATAT----------------------------------------------------AAAAAAGGTTGTCGCTGCTAATA--AAAATCCATTGTTATCTGGGACATATCTGATTATATTGCAT-TCTAT--A-----------------TA-TACAAAATACTAAT-TGGCCTGGTCTTTGTTCT-TAA---CGTTTTGCGTCTTAATTTCT--------------GTGTGT--------------------------------GT-ACTATTTTGTTATTATCTATAAACCATTTGCTGCCTGCCTTATCG---TGCCAGT----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................AAAAAGGTTGTCGCTGCT..........................................................................................................................................................................................................................................................1811.00110000
......................................................................................................................................................................................................................................................TTTTGCGTCTTAATTTCT--------------GTG.................................................................................................2111.00101000
.....................................................................................................................................................................................................................................................GTTTTGCGTCTTAATTTCT--------------GTGTGT--------------------------------..............................................................2511.00101000
droVir3
AGC-GCAATA--AATG---TGCGCACTTGTTTTGCAT-GATAACCGA-----AGGGCAATATAGCTGTGAATAATACAATTACAGGTGCGCG----ACAG---TCAAAGGCCCAGACT----------------GGTAATCAG----------------------TAATCGGCAA-AGCCT--TGTTACTCTTA-GCCAG-TT-TA-------------CC--TTATTCATTGTTCTTTCG---CTTTTTGCGTCTTTAAATATGGAGCTCTTTCTGCGA--TT--GTGTATG------------TGTGTGTGTGTAT-GTGTTTGCGGATTTATCTACAATC-GT-C--------GCTTATCGGTATGCCAGCT---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................TTTAAATATGGAGCTCTTTCT......................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................GGCCCAGACT----------------GGTAATCAG----------------------T....................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ATATGGAGCTCTTTCTGCGA--TT--GT..........................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................ATCAG----------------------TAATCGGCAA-AGCCT--T..................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
........................................................................AATACAATTACAGGTGCGC...............................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................GTGCGCG----ACAG---TCAAAGGG...........................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................G---TCAAAGGCCCAGACT----------------GGTAATCAG----------------------T....................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATGGAGCTCTTTCTGCGA--TT--G...........................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................TATCTACAATC-GT-C--------GCTTATC...............2111.001000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GTGTAT-GTGTTTGCGGATTTATCTAT.......................................2611.001000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGTGTGTAT-GTGTTTGCGGATT..............................................2211.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTCTGCGA--TT--GTGTATG------------TGTG.....................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................TGTAT-GTGTTTGCGGATTTATCT.........................................2311.001000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................AG----------------------TAATCGGCAA-AGCCT--TG.................................................................................................................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................TCAG----------------------TAATCGGCAA-AGCCT--TG.................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
.................................GCAT-GATAACCGA-----AGGGCAAT..............................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CGA--TT--GTGTATG------------TGTGTGTGTG...............................................................2220.501000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TT--GTGTATG------------TGTGTGTGTG...............................................................19200.102000002000000000000000000000000000000000000000000000000000000000
droMoj3
TGC-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTATGTATGTGT--------------GTGTGTGAATAT--TTGTTT--GT--TTGT--------GT-GTGTTTACGGATTTATCTACAATCG-T-T--------GCTTATCGTCATGCCAGCT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................T-GTGTTTACGGATTTATCTACA......................................2211.001000010

Generated: 05/18/2015 at 12:31 PM