ID:

dsi_1461

 Coordinate:

3l:16012388-16012537 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.5 -6.4

Flybase annnotation

CDS [3l_16012534_16012587_-]; three_prime_UTR [3l_16010722_16012533_-]; exon [3l_16010722_16012587_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TCAAACGAGAAGGAGTCGACCGAGGAGAACAAAGAGAAGGAGGAAACAAAGTAAATTCGCCGTTAGTTATATGCGTACATATATCTAGTATATGTGTATGATCGAAGGAAACAAAAACACCCACATACACACACATTATATATATATACATATGTAGTACGATACTATATAGTAAGGCCCTATATAGCTAGGCGCTACGCTCTCATATATAAGCATTCAGACATCAGAAAACCACTCGAAAAACAAAAAA
*******************************************************************************************.((((((((.......................))))))))..............********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..........................................................................................................................................................................................................TCATATATAAGCATTCAGACATCAGA...................... 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0
.......................GGAGAACAAAGAGAAGGAGGAAACA.......................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................TATGATCGAAGGAAACAAAAACACCTAC.............................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................GAGGAGAACAAAGAGAAGG.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................CCACATACACACACATTATATATAT......................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................ATCGAAGGAAACAAAAACACCCAC.............................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................ATGTGTATGATCGACGGAAACAAAAACA................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................ATGTGTATGATCGAAGGAAA........................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................GTATGATCGAAGGAAACAA........................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCAGAAAACCACTCGAAAA........ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................GTATGATCGAAGGAAACAAA....................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCTCATATATAAGCATTCAGACATCAGAAA.................... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TCATATATAAGCATTCAGACATCAGAAAA................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CATATATAAGCATTCAGACATCAGAA..................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CATATATAAGCATTCAGAC............................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TAGGCGCTACGCTCTCATATATAAGCATT................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TACGCTCTCATATATAAGCATTCAGA............................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................AGAACAAAGAGAAGG.................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................TGTATGATCGAAGGAAACAAAAACACC................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................TATGTGTATGATCGAAGG.............................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........GAAGGAGTCGACCGAGGAGAACA........................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........AGGAGTCGACCGAGGAGAACAAAG........................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........AGGAGTCGACCGAGGAGAACAAAGA....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TATATAAGCATTCAGACATCAGAAAA................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...........................AAGAAAGAGAAGGAGGAA............................................................................................................................................................................................................. 18 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................GATTGATCGAAGGAAAAAAAA...................................................................................................................................... 21 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATATATAAGCATACAGCCGT.......................... 20 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTTTGCTCTTCCTCAGCTGGCTCCTCTTGTTTCTCTTCCTCCTTTGTTTCATTTAAGCGGCAATCAATATACGCATGTATATAGATCATATACACATACTAGCTTCCTTTGTTTTTGTGGGTGTATGTGTGTGTAATATATATATATGTATACATCATGCTATGATATATCATTCCGGGATATATCGATCCGCGATGCGAGAGTATATATTCGTAAGTCTGTAGTCTTTTGGTGAGCTTTTTGTTTTTT
*********************************************************************************************************.((((((((.......................))))))))..............******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................................................................................TCTGTAGTCTTTTGTTG............... 17 1 2 2.50 5 5 0 0 0 0 0
.........................................................................................................................................................................................................................ATCTGTAGTCTTTTGTTG............... 18 2 4 1.00 4 4 0 0 0 0 0
............CGCAGCTGGCTCCTC............................................................................................................................................................................................................................... 15 1 3 0.67 2 2 0 0 0 0 0
........................................................................................................................................................................................................................AATCTGTAGTCTTTTGTTG............... 19 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................ATCTGTAGTCTTTTG.................. 15 1 8 0.50 4 4 0 0 0 0 0
.............................................................................................................................................................................................................ATATTTTCCTAAGTCTGTCGT........................ 21 3 5 0.40 2 0 2 0 0 0 0
..............................................................................................................................................................................................................TTTATTCGTTAGTCTGTA.......................... 18 2 20 0.35 7 0 0 5 0 2 0
........................................................................................................................................................................................................................AATCTGTAGTCTTTTG.................. 16 1 6 0.17 1 1 0 0 0 0 0
........................................................................CGCACGTACATAGATCATAGACA........................................................................................................................................................... 23 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TAATCTGTAGTCTTTTGTTG............... 20 3 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TCTGTAGTCTTTTGTT................ 16 1 13 0.08 1 1 0 0 0 0 0
................GCTGGCTCCTCTTTT........................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 1 0 0
..............................................................................................ACATGCTAGTTTCCTTGGT......................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0
......................................................................................................................................................................................ATATCGATCAGCGGTG.................................................... 16 2 18 0.06 1 0 0 0 1 0 0
..........................................................................................................................TATATGTGTGTGTAAT................................................................................................................ 16 1 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................ATCTGTAGTCTTTTGTT................ 17 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTGAGCTTTTGGTGTTT. 18 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 01:11 AM