ID:

dsi_1460

 Coordinate:

3l:11657666-11657815 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.8 -42.8 -42.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGTTGGAGGACAGCCCGGACAGACCGGAGACAGAGTAGGACAACCAGGATACGGAACCCAGACAGGACAAATTGGGGCACCAGGTCGATATACAGATGGAAGTCAAACTGTACCTGGTGCTGTTGGAACCGGCGGAGTTGGTAAGCAGCCATCAAGGCAGCGGAATCTAAGATAATGTTTTGAATGGTTCGTTTTCTAGTTGCTGCCGGTACCAGCGGAGCTGACGATGCCTTCTCCCAAGCCGAGTCC
**************************************************.(((((..(((..(((((((..((((((((((((((......((((.((.....))..))))))))))))).......((((((...))))))..((.(((.....))).))....))))).....)))))))..)))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................AACTGTACCTGGTGCTGTTGGAACC....................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
...........................GAGACAGAGTAGGACAACC............................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0
.................................................ATACGGAACCCAGACAGGAC..................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................................GTACCAGCGGAGCTGACGATGC................... 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................GTCAAACTGTACCTGGTGC................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.........................CGGAGACAGAGTAGGACA............................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................AGCGGAGCTGACGATGCCT................. 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................ATGGAAGTCAAACTGTACCTGGT................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................AAACTGTACCTGGTGCTGTTGGAACC....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........................GGAGACAGAGTAGGACAAC............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
...........................................ACCAGGATACGGAACCCAGAC.......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................AGCGGAGCTGACGATGCCG................. 19 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GCGGAGCTGACGATGCCG................. 18 1 1 1.00 1 1 0 0 0 0 0
..............................AGACAGTAGGACAACCAGGAT....................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..............................................AGGATACGGAACCCAGACAGGACAA................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GCGGAGCTGACGATGCCT................. 18 0 1 1.00 1 1 0 0 0 0 0
.............................GACAGAGTAGGACAACCAGGATACGGG.................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
....................CAGACCGGAGACAGAGTAGGAC................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................TGTACCTGGTGCTGTTGGAACC....................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TACCTGGTGCTGTTGGAACC....................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................................CAATCAGGATACGGAACCC.............................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TACAGATGGAAGTCAAACT............................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
.........................CGGAGACAGAGTAGGACAACCAGGATAC..................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...........................................ACCAGGATACGGAACCCAGACAGGACA.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......................ACCGGAGACAGAGTAGGACAACCAGGAT....................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.CGCTGGAGGACAGCCCGCA...................................................................................................................................................................................................................................... 19 2 3 0.67 2 0 0 2 0 0 0
.....................................AGGGCAAACAGGATACGGAA................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 0 1 0 0
...............................................................................................................TACCGGGTGCTGTAGG........................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
............................................................................GACACGAGGTCGATA............................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

AGCAACCTCCTGTCGGGCCTGTCTGGCCTCTGTCTCATCCTGTTGGTCCTATGCCTTGGGTCTGTCCTGTTTAACCCCGTGGTCCAGCTATATGTCTACCTTCAGTTTGACATGGACCACGACAACCTTGGCCGCCTCAACCATTCGTCGGTAGTTCCGTCGCCTTAGATTCTATTACAAAACTTACCAAGCAAAAGATCAACGACGGCCATGGTCGCCTCGACTGCTACGGAAGAGGGTTCGGCTCAGG
**************************************************.(((((..(((..(((((((..((((((((((((((......((((.((.....))..))))))))))))).......((((((...))))))..((.(((.....))).))....))))).....)))))))..)))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body		 SRR618934
dsim w501 ovaries
......................................................................................GCTATATGTCTACCTTCA.................................................................................................................................................. 18 0 1 1.00 1 1 0 0
...............................................................................................................................................................TCGCCTTAGATTCAGTTAC........................................................................ 19 2 3 0.67 2 0 2 0
...................................................................................................CTTGAGTTTGATATGGAC..................................................................................................................................... 18 2 8 0.25 2 0 2 0
..........................................................................................................TAGACATGGACCACGA................................................................................................................................ 16 1 4 0.25 1 0 0 1
....................................................................................................................................................................................................................GGTCGACTCGATTCCTACG................... 19 3 19 0.05 1 0 0 1

Generated: 04/24/2015 at 10:33 AM