ID:

dsi_14599

 Coordinate:

3r:10106694-10106843 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.3 -17.0 -16.9 -16.7

Flybase annnotation

exon [3r_10106576_10106693_-]; CDS [3r_10106576_10106693_-]; intron [3r_10106694_10108049_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACTACAACAACAACCACACTGAACACTCAACGATGTGGACGATGACGTCGAATGAATCTCGTGAAAACTTTTCGGCTGTACCAACTGCAATTCCACTGGGGAACGGCAAATCATCGCTAACCACTTGGTCACTGTCTTCTATGGGCATGGTCGTCGCAACCGATGGGGTCTATATATTGAATCCACACTATATCAATAGTGCTCGCAAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGCATGG
****************************************************((.....(((((..........(((.((((((..(((..((((.....))))..))).................)))).)).))).........)))))..))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 GSM343915
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O002
Head
 M023
head
 O001
Testis
 SRR1275487
Male larvae		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................................................................................CTTGCCGATGAAGAACGC.... 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGTGCTCGCAAAATTCTTGA................................ 20 1 1 4.00 4 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAATTCTTGAGAACCGCGCCCT.................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTCTTGAGAACCGCGCC...................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGCCGATGAAGAACGCATG. 20 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................CACTGTCTTCTATGGGCATGGTCGT............................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTTGCCGATGAAGAACGCATG. 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
....................................................ATGAATCTCGTGAAAACTTTTCGGCT............................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTGCTCGCAAAATTCTTGA................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATGAATCTCGTGAAAACTTTTCGGCC............................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GCTCACCACCTGGTCACGGTCT................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACGTGCTCGCAAAATTCTTGA................................ 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCAAAATTCTTGAGAACC........................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCCGATGAAGAACGCATG. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCCGTGACGATGAAGAACGCA... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTGCTCGCAAAATTCTTGAG............................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGCGCCCTTGCCGATGAAGAACGCA... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCTTGAGAACCGCGCCCT.................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATTCTTGAGAACCGCGCCCT.................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCTATGGGCATGGTCGTCGCAACCGA...................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TGAATCTCGTGAAAACTTTTCGGCA............................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................TTTTCGGCTGTACCAACTGCA................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCTTGGTCACTGTCTTCTATGGGC....................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAAAATTCTTGAGAACCGCGCC...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACGTGCTCGCAAAATTCTTGA................................ 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATTCCACTGGGGAACGGCAAATCATCG..................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CGCAAAATTCTTGAGAACCGCGCCCT.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TATATCAATAGTGCTCGC........................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................TAACGACTTGGGCACTGTCTC............................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CAACAACAACCACACTGA................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CATGGTCGATGAAGAACGCA... 20 3 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAACGATCTGGTCACTGTCT................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CATGTCGATGAAGAACGCA... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CGATGAAGAACGCAGG. 16 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AACGATCTGGTCACTGTCT................................................................................................................ 19 3 15 0.27 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GATGAAGAACGCATCG 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACCACTGGGTCACTCTC................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CATGTCGATGAAGAACGC.... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATGTCGATGAAGAACGCA... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................AACGACCTGGGCACTGTCT................................................................................................................ 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ACGATATCGACGATCACGT......................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAACGATTTGGGCACTGTC................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................ATACCGATGAAGAACG..... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTGATGTTGTTGTTGGTGTGACTTGTGAGTTGCTACACCTGCTACTGCAGCTTACTTAGAGCACTTTTGAAAAGCCGACATGGTTGACGTTAAGGTGACCCCTTGCCGTTTAGTAGCGATTGGTGAACCAGTGACAGAAGATACCCGTACCAGCAGCGTTGGCTACCCCAGATATATAACTTAGGTGTGATATAGTTATCACGAGCGTTTTAAGAACTCTTGGCGCGGGAACGGCTACTTCTTGCGTACC
***********************************************************************************************((.....(((((..........(((.((((((..(((..((((.....))))..))).................)))).)).))).........)))))..))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
 GSM343915
embryo
.............GCGTGTGACTTGTGAGTTGCTAT...................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................AAAAGCCGGCATAGTTCACGTTA.............................................................................................................................................................. 23 3 4 0.25 1 0 1 0 0 0 0 0
........................................................................................GCTGAGGTGACCCCTTGC................................................................................................................................................ 18 2 5 0.20 1 0 0 0 1 0 0 0
.......................................................................................................................TTGGTGAACCAGTGAA................................................................................................................... 16 1 7 0.14 1 0 0 1 0 0 0 0
....................................................................................................................CGATTGGTGAAGCGGTGA.................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TTGGCGCGGGAGCGG................ 15 1 8 0.13 1 0 0 1 0 0 0 0
........................................................................................GCTGAGGTGACCCCTTG................................................................................................................................................. 17 2 17 0.12 2 2 0 0 0 0 0 0
....................................................................................................................................................................................TTCGGTCTGATATAGTTA.................................................... 18 2 17 0.12 2 0 0 0 0 2 0 0
...............................................................................................................................................................................ATAACTTAGGCTTGAAATAG....................................................... 20 3 12 0.08 1 0 0 0 0 1 0 0
.....................................................................................................................................................................CCACAGATATCTAACTTTG.................................................................. 19 3 14 0.07 1 0 0 0 0 0 1 0
......................................................CTTAGAGCACTTTGGTAAC................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 1
.........TTGTTGGTGTGACTA.................................................................................................................................................................................................................................. 15 1 19 0.05 1 0 0 1 0 0 0 0
........................................................................................GCTGATGTGACCCCTTGC................................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................GCAATTGGTGAAGCGGTGA.................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:27 AM