ID:

dsi_14560

 Coordinate:

3r:4267899-4267963 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.9 -13.1 -13.0 -12.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGAACAAAAGTGCTTTATCCAGACTACGCCCGATGATATGGATGTGCTGGGTACAGTGGGAAAGCCCATCTTCAAGTTGTAGGCATCAGTAACTGCTCCGCTTGCCTCCTTTCAGTTCAATACGCCATTGAGGTGGAAGATCCAAGTACGGGCGGATTCATGCCC
**************************************************.........((((.........(((((.((((..........))))...))))).....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.............................CCGATACTATGGACGTGCTGG................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0
........................TACGCCCGATGATATGGATGT........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................TTGAGGTGGAAGATCCAAGTACGGGCG........... 27 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................AGGGGGAAGATCCAAGTACGG.............. 21 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................TGGTTCAATACGCCATTGAGGTGGA............................ 25 2 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................................AAGATCCAAGTACGGGCGGCTTTA..... 24 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................ATCAGTAACTGCTCCGCTTG............................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................TCCAAGTACGGGCGGATTCATGCC. 24 0 1 1.00 1 0 0 1 0 0 0 0
...............................GATGATATGGATGTGCTGGTT................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................GTAGGCATAAGTAAC........................................................................ 15 1 2 0.50 1 0 0 0 0 1 0 0
................................ATGAAATGGATGTGCTG.................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 1 0
..............................................................................GTAGGCATAAGTAACG....................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 2
.............................................................................................................................CATTGAGTTGGAAGA......................... 15 1 16 0.06 1 0 0 0 0 0 0 1
..............................................................................GTAGGCCTCAGGATCTGCT.................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0
...................................................................................................................................................ACGGTCGGATTCATGA.. 16 2 19 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

CCTTGTTTTCACGAAATAGGTCTGATGCGGGCTACTATACCTACACGACCCATGTCACCCTTTCGGGTAGAAGTTCAACATCCGTAGTCATTGACGAGGCGAACGGAGGAAAGTCAAGTTATGCGGTAACTCCACCTTCTAGGTTCATGCCCGCCTAAGTACGGG
**************************************************.........((((.........(((((.((((..........))))...))))).....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O001
Testis
 O002
Head
 SRR902008
ovaries
 M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
...........................CGGGCTACTATACCTACACGACCCATG............................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................GGAAAGTCAAGTTATGCGGTA..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CACCTTCTAGGTTCATGCC.............. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................TGACGAGGCGAACGGAGGAAAGTCAAGT.............................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................CTAGGTTCATGCCCGCCTAAGT..... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................TGTCAGTCTTTCGGGTAGA.............................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................GTTCAACATTAGTAGCCATT......................................................................... 20 3 11 0.91 10 0 0 0 0 0 5 3 2 0 0 0
.......................................................................................TCAGTGTCGAGGCGAAC............................................................. 17 2 16 0.63 10 10 0 0 0 0 0 0 0 0 0 0
.......................................................................AGTTCAACATTAGTAGCCATT......................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................AGTTCAACATTAGTAGCCAT.......................................................................... 20 3 8 0.38 3 0 0 0 0 0 0 1 2 0 0 0
.................AGGTCTGACGCGGGCT.................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................ATCAGTGACGAGGCGAAC............................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.......TTCACGAGATAGGTC............................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................CCGTAGTCGTTGGCGAGGCGG............................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................TTCTAGGTTGATGCTCG............ 17 2 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGACGAGGCAAAGGCAGGA....................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................ATAGGTTCACGCCCGCC.......... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................TCAAGTTATTCGGTA..................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 11:49 PM