ID:

dsi_14549

 Coordinate:

2r:6724425-6724706 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-50.4 -50.3 -50.3

Flybase annnotation

exon [2r_6724707_6724985_+]; CDS [2r_6724707_6724985_+]; exon [2r_6724310_6724424_+]; CDS [2r_6724310_6724424_+]; intron [2r_6724425_6724706_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGTTGGCATATATAGAACAGGATATTGTAGCAGCACCTCATGAACTTTAATTTGCAGTATCAAAACCTTTAGAAATATTAATTCATTGATAATTAATTGCTTTCCGATTAGCTGCATTTCATTGAATACACTTAATTAATTATAGTTCATGAGAGTCTCAAAATCATTAAAAAAAACCAATGAAGACTTCAAGGCACGGTTTAGGCAGCTGGCGGAACATCATGATCCATTTATCCTTAGTTCATCTCACATCTGTGTGTCATCTAAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCCCCACCA
**************************************************.........((.(((((((((..((((((((((.(((....))).((((((((((.((((((((((((((((.....((((.....))))....)))))).(((((((.....)))))))))))).....................))))).))))))))))(((((.....(((((..........)))))))))).....((.(((((.....)))))))(((.((...)).)))...))))))..))))..........))))))))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
.....ATTGGTTGGAATGGAGCG....................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TGCTGTCGTAAATCTTCTGGCGAGC..................... 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................GTAAAAGTTGGCATATATAGAACAG............................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................AACGGGGTATTGTAGCA................................................................................................................................................................................................................................................................................................... 17 2 6 0.33 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................ATTGTACTTCATCAGAGTCTC.................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0
..................................................................ATATATAGAACAGGGCATTTT....................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TTGAGAGTCTCAAAA................................................................................................................................................................ 15 1 13 0.08 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................AACAAAACCACTGAAGACTC...................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................CTTTGATCCATAGTTCATC............................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 1
............................................................................................CACCTCGTGAACCTTAACT............................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................................................AGAGGAGCCACCGCCCTAC.. 19 3 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................CGCGGTAATGCTGTCGTA.................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GCGATGAAGACTGCAAGGC................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

GGAGTTAACCAACCTTACCTCGCAGACGAAGTGGTTCCTCAAAGTGTTGGCACTCATTTTCAACCGTATATATCTTGTCCTATAACATCGTCGTGGAGTACTTGAAATTAAACGTCATAGTTTTGGAAATCTTTATAATTAAGTAACTATTAATTAACGAAAGGCTAATCGACGTAAAGTAACTTATGTGAATTAATTAATATCAAGTACTCTCAGAGTTTTAGTAATTTTTTTTGGTTACTTCTGAAGTTCCGTGCCAAATCCGTCGACCGCCTTGTAGTACTAGGTAAATAGGAATCAAGTAGAGTGTAGACACACAGTAGATTTAGGTCCATCACGACAGCATTTAGAAGACCGCTCGTCACGTCGGTGGCGGGGTGGT
**************************************************.........((.(((((((((..((((((((((.(((....))).((((((((((.((((((((((((((((.....((((.....))))....)))))).(((((((.....)))))))))))).....................))))).))))))))))(((((.....(((((..........)))))))))).....((.(((((.....)))))))(((.((...)).)))...))))))..))))..........))))))))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..............................GTGCTGCCTCAAAGTGTTC............................................................................................................................................................................................................................................................................................................................................. 19 3 8 5.00 40 28 3 4 5 0 0 0 0
..............................GTGCTGCCTCAAAGTGTT.............................................................................................................................................................................................................................................................................................................................................. 18 2 3 2.00 6 2 3 1 0 0 0 0 0
........................................................................................................................................................................TCGAGGTGAAGTAACTTAT................................................................................................................................................................................................... 19 2 3 1.00 3 2 0 1 0 0 0 0 0
..............................GTGCTTCCTCAAAGTGTT.............................................................................................................................................................................................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................TTCGTGGACTACTTGAAGTTA................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 1 0 0
............................TCGTGCTTCCTCAAAGTGTT.............................................................................................................................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................TCGAGGTGAAGTAACTTA.................................................................................................................................................................................................... 18 2 9 0.22 2 1 0 1 0 0 0 0 0
....................................................................................................................ATAGTTTTGGAAATC........................................................................................................................................................................................................................................................... 15 0 5 0.20 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................TAGATTTAGCTCCCCCACGA.......................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0
...............................TGCTGCCTCAAAGTGTT.............................................................................................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................TAATCGAGGCGAAGTAACTT..................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0
.............................GGTGCTGCCTCAAAGTGTT.............................................................................................................................................................................................................................................................................................................................................. 19 3 11 0.09 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................TCGACGCGAAGTAACTTA.................................................................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0
.............................GGTCGTTCCTCAAAGTGTTC............................................................................................................................................................................................................................................................................................................................................. 20 3 15 0.07 1 1 0 0 0 0 0 0 0
...........................................................................................................................TGGAAATCTTTATCA.................................................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1 0
..............................GTGCTGCCTCAAAGTGCT.............................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................................AGGTATGACGTAGAGTGTA....................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6724375-6724756 + dsi_14549 CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGTTG---GCATA--TATAGAACAGGA-TATTGTAGCAGCACCTCATGAACTTT----------------------AATTTGCAGTATCAAAACCTTTAGAAATATTAATTCATTGATAATTAATTGCTT------------------------------------------------------------TCC-------------------------------------------------------------------------------------------------GATTAGCTGCA---TTTCATTGAA-----------TACACTTAATTAATTATAGTTCATGAGAGTC--TCAAAATCATTAAAAAAA----------------A--CCAATGAAGA--------------------------------------------------------------------------CTTCA-----------AGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGT-------------TTAGG----------------------CAGCT------------------------------------------GGCGGAACATCATGA-TCCATTTAT------C--CTT--AGTTCATC---TCACATCTG------TGTGTC-----ATCTAAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCCCCA-CCA
droSec2 scaffold_1:3561259-3561643 + CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGTTG---AAATATATATAGAACAGGA-TATTGTAGCAGCATCTCATGAACTTT----------------------AATTTGCAGTATCAAAAGCTTTAGAATTATTAATTCATTGATAATTAATTGCTT------------------------------------------------------------TCC-------------------------------------------------------------------------------------------------GATTAGCTGCA---TTTCATTGAA-----------TACACATAATTAATTATAGTTCATGAGAGTC--TCAAAATCATTAAAAAA-----------------AAATCAATGAAGA--------------------------------------------------------------------------CTTCA-----------AGACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGT-------------TTAGG----------------------CAGCT------------------------------------------GGCGGAACATCATGA-TCCATTTTT------C--CTT--AGTTCATT---TCACATCTG------TGTGTC-----ATCTGAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCCCCA-CCA
dm3 chr2R:5948820-5949172 + TCTCAATTGGTTGGAATGGAGCGTCTGCTTTACCAAGGAGTTTCACAACCGTGAGTACAAGTTG---GATTA--TGTAACACAGGA-TATTGTAGCAGCATCTCATGAACTTT----------------------AATTTGCAGTATCAAAATCTTTAGAATTATTAATTCATTGATAATTAATTGCCT------------------------------------------------------------TCC-------------------------------------------------------------------------------------------------AATTAGCTGCA---TTTCATTAAA-----------TATACTTAATTAATTATAGTTCATGTGAGTC--TCAAAATCATAAAAAAA-----------------A--ACATTGAAGATC---------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATGA-GCCATTTGT------C--CTT--AATTCATC---TCACATCTG------TGTGTC-----ATCTAAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCACCA-CCA
droEre2 scaffold_4929:8422182-8422591 - CCTCAATTGGCTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGCTG---GGTTT--TATAGAACAGGT-TTTTGTAGCAGCACGTTGTGAACTTA----------------------AATTTGCAGTATCCGAACCTTTACAATT-----------CATAAATAATTTCCTAACGCACAAACA-----AATTATATTCTAAGTTGAA----------------------TTTCCAAATGTT----------------------------------------------------------AAATTACA------------------------ATTTAGCCGCA---TTTCATTGAA-----------AATACTTAATTCGTTAGAGTTCATGTGAGTC--TCAAAATCATTAGAAAA-----------------C--CCATCAAGGA--------------------------------------------------------------------------GTTCA-----------AGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGT-------------TAATG----------------------CAGCA------------------------------------------GG--------CATGA-TCCATTTTT------C--CTA--AAATCATC---TCTCATCTG------TGTGTC-----ATCTAAATCCAGGTAGTGCTGTCCTAAATCTTCTGGCGAGCAGTGCAGCCACCTCCCCA-CCA
droYak3 2L:18581378-18581808 + CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTACGTAACACCTC---GGTTG--TAGAGAACAGGT-TATTGTAGCAGCGCCTCATGAACTTT----------------------AACTTACAGTATCAGTCCCTTTACCATTATTTATGCATAAATAAT----TTCCTAACACACATACACACATAATTATATTCTAAGTTGAAGGAAAAATCTTAATTTTTATTGTTTCCTAAAGGC----------------------------------------------------------AAATAAAA------------------------AATTAGATGCA---TTTTATTAAA-----------TATACTTAAATAAATATAGTTCATGTGAGTC--TCAAAATCAGTAAAAAA-----------------AAATCA--TAAGATT---------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------T--------------T---------------------------------------------ATCATATCATGT-TCCATTTTT------C--CTA--AATCCATA---TCACATCTG------TGTGTC-----ATCTAAATGCAGGTAGTGCTGTCGTAAATCTCCTGGCGAGCAGTGCAGCCACCACCCCA-CCA
droEug1 scf7180000409209:231010-231343 - CTTGAATAGGTTGGAATGGAGCATTTGCTTTACTAAAGAGTTTCATAACCGTGAGTAAAAG-TG---GATTA--TATAGAATGGGGAT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAACATT-----------------------------------------------------TTATAGA----------------------------------ATGTGTATTCTTTAAAAT--------GA-AAAATTGGGTTTTCCTCT--CAT------TCCTCTC---------------------------------------------------CTCGTTAAAATCTTAAATCCATTAAAAGAAGAAGGGA-----------------------------------------------------------------------------------------------------------TAATACTAAC-------------------------------------------------------------------------------------------------------------------------------TTTGACAGCATGTT-T------A-GC-----TT-----------------------------------------AAAGTAATATCATGA-TTCATCTTTTCGAGGC--TTT--AAAACATC---TCCCATCTG------TATGTC-----ATCTAAATCCAGGTAGCGCTGTTGTTAATCTTCTAGCGAGCAGTGCAGCCACCGCGCCA-CCT
droBia1 scf7180000301754:389335-389632 - TCTGAATTGGTTGGAGTGGAGCATATGTTTTACCAAGGAGTTCCATAACCGTGAGTAAAACTAC---TAT----------------------------CACCT-------TTT----------------------AAATGCCAGGATCA---CCTTT--------------------------------------------------------------------------------------------------------------------------------------TGTAAGGAATTAAATGACGTT-----------------------------------------------------TT--AGA----------------------------------ACGCTTATTCATTACGTT--------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-GC-----CAATGTTAGTTTAGAATTCTAACTATATCTATACTAAACACTAAGCGGGAAATCATGA-TCCATTT----------------GAAGTATCTCATCCCACTTG------TGTGCC-----ATCTAAATCCAGGTAGTGCTGTCATAAATCTTCTGGCGAGCAGTGCAGCCACAGCCCCA-CCC
droTak1 scf7180000415274:159902-160343 + CCTGAATTGGTTGGAGTGGAGCATCTGCTTCACCAAAGAGTTTCATAACCGTGAGTACAAC-TG---GACTA--TATAGAATGGGGAT-A------------ACAAGAACTTAATGATTTCAATATATTAACACGAATTTGTAGTAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTGAAT--------ATCAATATCATTAACAGCA---ATTCTAAAAA-----------TATTGTT----------------------------------ATAAAAAAA-----------------TT--CAT------TCCCTTCATAT--TCCATT-----------------------------------------------------------T-----------GGGAACGGCCCTTAATAGTTATTTTAATACTTTTAATTCAATTAAGGTCGGTCATAATAGGTCAAAGGTCATTAACATCTAAAAAACCATTTCATAAGGCTTAAATTAGAATAAATACAAAC-------------------------------------------------------------------------------------------------------------------------------TTTGTCAGCATGTC-TTTGAAAA-GC-----CC-----------------------------------------------------------------------------A--TATCAATA---TCCCATCTG------TGTGTC-----ACCTAAATCCAGGTAGTGCTGTCGTTAATCTTCTGGCAAGCAGTGCAGCCACCGCTCCA-CCT
droEle1 scf7180000491107:1141587-1142035 - TCTCAATTGGCTGGAGTGGAGCATCTGCTTTACCAAAGAGTTTAACAACCGTGAGTAATGT-CG---ATTCC--TTTATAATGTGGGT-ATGCGATTGCA-------------------------------------------G------------------------------------------------------------TTGTAGTTGTGCC---------AA---GT----------------------AC----CTATACAAAATCCCAAGACTCACT------TGAATGCAATTAAATTACATAAAAGGGGATTATCCATTTAAATTTATAAAATA-AATTTATTGACCCTATCAATTTGTATAGATA-TTAATA-AAACTTT----------------------------------A------------------------------------------CCCATAT--G----------------------------------------------------------------------ATATGAAG-------------------------------------------------------------------CTTTATCCATTAAATAATACTCCCAATGGGTTGTGCTTAAAATTAATACTAAC-------------------------------------------------------------------------------------------------------------------------------T-TCACAGCATGATCTTTGATGATACTCAACT------------------------------------------TG-GTAACATTATCA-TCCACTC----GAACC--TTT--AAATCAAC---TCCCATCTG------TGTGTC-----ACCTAAATCCAGGTAGTGCTGTCGTTGCCCTCCTGCCCAGCAGTGCAGCTACCGCCCCG-CCG
droRho1 scf7180000777200:136057-136443 + CCTAAATTGGCTGGAGTGGAGCATCTGTTTCACCAAAGAGCTTAGCAACCGTGAGTAAAGT-TG---GATTC--TTTAGAATGTGGAT-ATGTAATAGTATATAA------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAAAATTCACAAGTCTCACATAATTTTGAA------TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAAATTTTGAAAATAAATGAGTCATAAAATTAAATTTCGAAAAAATAGTATTTTGAGATATTACATTATATTTAGTTTTATCAAACTATCAACTATTATT---GGAGCAAATTGCTAGT-------------TTACACAGCATGCA-TT--------------T---------------------------------------------GGAATATCATGA-CCCATTTTTTCGAACC--TTT--AAAGCATC---TCCCATCTG------TGTGTT-----ATCTAAATTCAGGTAGTGCTATCGTAGCCCTTCTGGCCAGCAGTGCAGCTACCGCCCCG-CCG
droFic1 scf7180000453948:592610-592720 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGA-TCCATGTTCTCGAACC--TTT--AAACCATC---TTCCATATG------TGTGTC-----ACCTAAATCCAGGTAGTGCGATTGTTAATCTTCTGGCGAGCAGTGTAGCCACCGCCCCA-CCA
droKik1 scf7180000302386:337029-337430 + CCTTAATGCTTTGGAGTGGAGTATTTGTTTTACCAACAAATTAAACAATCGTGAGTAAATAAATTAAAAATATATATA---------------------------------------------------------------------------------------------------------------------------TATTGGACGATATTTTAAGTAAACAAA---GT----------------------CGGTAAATATTAA--AAC-----------CTAACTCTGAA------TTACTAACATATTTGGAAATTAACAATTAAAA--------ATATATTTTATTAACGGTA---ATTTAAATAATAAATAAATAATAATGTT----------------------------------A------------------------------------------TCTATAT--G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTGTTATTTAAGGGATAATTTATTAAATTAAATAAATTCCTTAAC----TAGCC------------------------------------------------------------CCTTAA--CCCATAACCCCATATTTTCCAGCA--TTTTAAATTCATC---TCTCTCACGTACATATTTCTT-----ACCTGCATCCAGGTAGTGCCGTTGTTACCCTCCTGGCCAGCAGTGCAGCCACCGCTCCG-CCT
droAna3 scaffold_13266:6079602-6079688 - CCTAACCCGACTGGAGTGGAGCACTTGTCTGGCCAACGATTCAATCAATCGTAAGTGGAACTAG---C------TGTAGGATTGGA-TTTAGGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395839:240235-240278 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAGCGCCATCATGAATATGCTGGCGAGCAGTCC---------GCTT-CCA
dp5 3:6162404-6162694 + CCTGTCCCGCATCGAGTGGAGTCTTTGCCTGTTCAAAGATTCGCATAATCGTAAGTAAAGCTAT---TAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CAT------TTTCCTCAGTTTTTGCACTCGAAACTAACAAAAGATTTTGATACATATCGATTATTATCTTGAATAAAACTATAACCCA-----------GGGAGCGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------TAATT---------------------------------------------GGAGGATAATTA-CTAACTTCCATCAACATAATA--ATCACATC---TGGTATCTG------TGTGTTGTCTTGTCTGTATCCAGGTAGTGGCGCAGTTGATGTCCCCAATGGCAGCTTAGCCACGGCACCG-CCA
droPer2 scaffold_11362:234-320 + CAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---TGGTATCTG------TGTGTTGTCTTGTCTGTATCCAGGTAGTGGCGCAGTTGATGTCCCCAATGGCAGCTTAGCCACGGCACCGGCCA
droWil2 scf2_1100000004513:5394718-5394773 + TCTGAATTCGCTGGAGTGGAGCACTTGCCTATCCAAAGATGGCAATAATCGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:20441203-20441259 - CCTGTCCCGTCTGGAATGGAGCAATTGCCTGTCCAAAGATACCAGTCATCGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:5696373-5696455 + CCTGTCCCGTCTGGAGTGGAGCAGCTGCCTGACCAAAGATGCCAGTCAACGTAAGTAGCTCTTT---AAATA----TAATATAGAA-TACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:11108113-11108183 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATG------TGTGTA-----ATTCCCATGCAGGTAAAGCGGGCCTTAATATCCTGAACAGCAGTCCAACGAGCAGCTC-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGTTG---GCATA--TATAGAACAGGA-TATTGTAGCAGCACCTCATGAACTTT----------------------AATTTGCAGTATCAAAACCTTTAGAAATATTAATTCATTGATAATTAATTGCTT------------------------------------------------------------TCC-------------------------------------------------------------------------------------------------GATTAGCTGCA---TTTCATTGAA-----------TACACTTAATTAATTATAGTTCATGAGAGTC--TCAAAATCATTAAAAAAA----------------A--CCAATGAAGA--------------------------------------------------------------------------CTTCA-----------AGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGT-------------TTAGG----------------------CAGCT------------------------------------------GGCGGAACATCATGA-TCCATTTAT------C--CTT--AGTTCATC---TCACATCTG------TGTGTC-----ATCTAAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCCCCA-CCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....ATTGGTTGGAATGGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTCGTAAATCTTCTGGCGAGC......................2511.00100000000001000000
......................................................GTAAAAGTTG---GCATA--TATAGAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
droSec2
CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGTTG---AAATATATATAGAACAGGA-TATTGTAGCAGCATCTCATGAACTTT----------------------AATTTGCAGTATCAAAAGCTTTAGAATTATTAATTCATTGATAATTAATTGCTT------------------------------------------------------------TCC-------------------------------------------------------------------------------------------------GATTAGCTGCA---TTTCATTGAA-----------TACACATAATTAATTATAGTTCATGAGAGTC--TCAAAATCATTAAAAAA-----------------AAATCAATGAAGA--------------------------------------------------------------------------CTTCA-----------AGACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGT-------------TTAGG----------------------CAGCT------------------------------------------GGCGGAACATCATGA-TCCATTTTT------C--CTT--AGTTCATT---TCACATCTG------TGTGTC-----ATCTGAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCCCCA-CCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TCTCAATTGGTTGGAATGGAGCGTCTGCTTTACCAAGGAGTTTCACAACCGTGAGTACAAGTTG---GATTA--TGTAACACAGGA-TATTGTAGCAGCATCTCATGAACTTT----------------------AATTTGCAGTATCAAAATCTTTAGAATTATTAATTCATTGATAATTAATTGCCT------------------------------------------------------------TCC-------------------------------------------------------------------------------------------------AATTAGCTGCA---TTTCATTAAA-----------TATACTTAATTAATTATAGTTCATGTGAGTC--TCAAAATCATAAAAAAA-----------------A--ACATTGAAGATC---------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATGA-GCCATTTGT------C--CTT--AATTCATC---TCACATCTG------TGTGTC-----ATCTAAATCCAGGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCACCGCACCA-CCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTG------TGTGTC-----ATCTAA.........................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAACCGTGAGTACAAGTTT---TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000100000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCTTCTGGCGAGCAGTGCAGC..............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATGA-GCCATTTGT------C--CT.......................................................................................................2112.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATTGGTTGGAATGGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
......TTGGTTGGAATGGAGCGTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCTGGCGAGCAGT...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCTTCTGGCGAGC......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATC---------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATGA-GCCATTTGT------C--.........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.................GGAGCGTCTGCTTTACCAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAAATCTTCTGGCGAGC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGCGAGCAGTGCAGCCACCGCACC.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGCTGTCGTAAATCTTCTGGCGA........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGGAATGGAGCGTCTGCTTTACCAAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTCGTAAATCTTCTGGC..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTCGTAAATCTTCT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTTGGAATGGAGCGTCTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGGCGAGCAGTGCAGCCACCGCACC.....3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATTGGTTGGAATGGAGCGTCTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....AATTGGTTGGAATGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGTTGGAATGGAGCGTCTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGAGTACAAGTTG---GATTA--TGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATC---------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATGA-GCCATT.....................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCGTAAATCTTCTGGCGAGC......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTGGAATGGAGCGTCTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAACCGTGAGTACAAGTTT---T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTCGTAAATCTTCTGGCGAGT......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC-----ATCTAAATCCAGGTAGT..............................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGGAGCGTCTGCTTTACCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGGTTGGAATGGAGCGTCTGCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AATGGAGCGTCTGCTTTACCAAGGAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTAAATCTTCTGGCGA........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGCGAGCAGTGCAGCCACCGCACCA-...2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCTTCTGGCGAGCAGTGCAGCCACC..........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCTGGCGAGCAGTG..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTCGTAAATCTTCTGGCGAGC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGGAATGGAGCGTCTGCTTTACCAAGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGCGAGCAGTGCAGCCAC...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAAATCTTCTGGCGAGCA.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droEre2
CCTCAATTGGCTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTGAGTAAAAGCTG---GGTTT--TATAGAACAGGT-TTTTGTAGCAGCACGTTGTGAACTTA----------------------AATTTGCAGTATCCGAACCTTTACAATT-----------CATAAATAATTTCCTAACGCACAAACA-----AATTATATTCTAAGTTGAA----------------------TTTCCAAATGTT----------------------------------------------------------AAATTACA------------------------ATTTAGCCGCA---TTTCATTGAA-----------AATACTTAATTCGTTAGAGTTCATGTGAGTC--TCAAAATCATTAGAAAA-----------------C--CCATCAAGGA--------------------------------------------------------------------------GTTCA-----------AGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGT-------------TAATG----------------------CAGCA------------------------------------------GG--------CATGA-TCCATTTTT------C--CTA--AAATCATC---TCTCATCTG------TGTGTC-----ATCTAAATCCAGGTAGTGCTGTCCTAAATCTTCTGGCGAGCAGTGCAGCCACCTCCCCA-CCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTG------TGTGTC-----ATCTAAATCCAG...................................................2511.0010000010
droYak3
CCTCAATTGGTTGGAATGGAGCGTCTGCTTCACCAAGGAGTTTCACAACCGTACGTAACACCTC---GGTTG--TAGAGAACAGGT-TATTGTAGCAGCGCCTCATGAACTTT----------------------AACTTACAGTATCAGTCCCTTTACCATTATTTATGCATAAATAAT----TTCCTAACACACATACACACATAATTATATTCTAAGTTGAAGGAAAAATCTTAATTTTTATTGTTTCCTAAAGGC----------------------------------------------------------AAATAAAA------------------------AATTAGATGCA---TTTTATTAAA-----------TATACTTAAATAAATATAGTTCATGTGAGTC--TCAAAATCAGTAAAAAA-----------------AAATCA--TAAGATT---------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------T--------------T---------------------------------------------ATCATATCATGT-TCCATTTTT------C--CTA--AATCCATA---TCACATCTG------TGTGTC-----ATCTAAATGCAGGTAGTGCTGTCGTAAATCTCCTGGCGAGCAGTGCAGCCACCACCCCA-CCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....ATTGGTTGGAATGGAGCGTCTGCTTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEug1
CTTGAATAGGTTGGAATGGAGCATTTGCTTTACTAAAGAGTTTCATAACCGTGAGTAAAAG-TG---GATTA--TATAGAATGGGGAT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAACATT-----------------------------------------------------TTATAGA----------------------------------ATGTGTATTCTTTAAAAT--------GA-AAAATTGGGTTTTCCTCT--CAT------TCCTCTC---------------------------------------------------CTCGTTAAAATCTTAAATCCATTAAAAGAAGAAGGGA-----------------------------------------------------------------------------------------------------------TAATACTAAC-------------------------------------------------------------------------------------------------------------------------------TTTGACAGCATGTT-T------A-GC-----TT-----------------------------------------AAAGTAATATCATGA-TTCATCTTTTCGAGGC--TTT--AAAACATC---TCCCATCTG------TATGTC-----ATCTAAATCCAGGTAGCGCTGTTGTTAATCTTCTAGCGAGCAGTGCAGCCACCGCGCCA-CCTSizeHit CountTotal NormTotal
No Reads
droBia1
TCTGAATTGGTTGGAGTGGAGCATATGTTTTACCAAGGAGTTCCATAACCGTGAGTAAAACTAC---TAT----------------------------CACCT-------TTT----------------------AAATGCCAGGATCA---CCTTT--------------------------------------------------------------------------------------------------------------------------------------TGTAAGGAATTAAATGACGTT-----------------------------------------------------TT--AGA----------------------------------ACGCTTATTCATTACGTT--------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-GC-----CAATGTTAGTTTAGAATTCTAACTATATCTATACTAAACACTAAGCGGGAAATCATGA-TCCATTT----------------GAAGTATCTCATCCCACTTG------TGTGCC-----ATCTAAATCCAGGTAGTGCTGTCATAAATCTTCTGGCGAGCAGTGCAGCCACAGCCCCA-CCCSizeHit CountTotal NormTotal
No Reads
droTak1
CCTGAATTGGTTGGAGTGGAGCATCTGCTTCACCAAAGAGTTTCATAACCGTGAGTACAAC-TG---GACTA--TATAGAATGGGGAT-A------------ACAAGAACTTAATGATTTCAATATATTAACACGAATTTGTAGTAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTGAAT--------ATCAATATCATTAACAGCA---ATTCTAAAAA-----------TATTGTT----------------------------------ATAAAAAAA-----------------TT--CAT------TCCCTTCATAT--TCCATT-----------------------------------------------------------T-----------GGGAACGGCCCTTAATAGTTATTTTAATACTTTTAATTCAATTAAGGTCGGTCATAATAGGTCAAAGGTCATTAACATCTAAAAAACCATTTCATAAGGCTTAAATTAGAATAAATACAAAC-------------------------------------------------------------------------------------------------------------------------------TTTGTCAGCATGTC-TTTGAAAA-GC-----CC-----------------------------------------------------------------------------A--TATCAATA---TCCCATCTG------TGTGTC-----ACCTAAATCCAGGTAGTGCTGTCGTTAATCTTCTGGCAAGCAGTGCAGCCACCGCTCCA-CCTSizeHit CountTotal NormTotal
No Reads
droEle1
TCTCAATTGGCTGGAGTGGAGCATCTGCTTTACCAAAGAGTTTAACAACCGTGAGTAATGT-CG---ATTCC--TTTATAATGTGGGT-ATGCGATTGCA-------------------------------------------G------------------------------------------------------------TTGTAGTTGTGCC---------AA---GT----------------------AC----CTATACAAAATCCCAAGACTCACT------TGAATGCAATTAAATTACATAAAAGGGGATTATCCATTTAAATTTATAAAATA-AATTTATTGACCCTATCAATTTGTATAGATA-TTAATA-AAACTTT----------------------------------A------------------------------------------CCCATAT--G----------------------------------------------------------------------ATATGAAG-------------------------------------------------------------------CTTTATCCATTAAATAATACTCCCAATGGGTTGTGCTTAAAATTAATACTAAC-------------------------------------------------------------------------------------------------------------------------------T-TCACAGCATGATCTTTGATGATACTCAACT------------------------------------------TG-GTAACATTATCA-TCCACTC----GAACC--TTT--AAATCAAC---TCCCATCTG------TGTGTC-----ACCTAAATCCAGGTAGTGCTGTCGTTGCCCTCCTGCCCAGCAGTGCAGCTACCGCCCCG-CCGSizeHit CountTotal NormTotal
No Reads
droRho1
CCTAAATTGGCTGGAGTGGAGCATCTGTTTCACCAAAGAGCTTAGCAACCGTGAGTAAAGT-TG---GATTC--TTTAGAATGTGGAT-ATGTAATAGTATATAA------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAAAATTCACAAGTCTCACATAATTTTGAA------TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAAATTTTGAAAATAAATGAGTCATAAAATTAAATTTCGAAAAAATAGTATTTTGAGATATTACATTATATTTAGTTTTATCAAACTATCAACTATTATT---GGAGCAAATTGCTAGT-------------TTACACAGCATGCA-TT--------------T---------------------------------------------GGAATATCATGA-CCCATTTTTTCGAACC--TTT--AAAGCATC---TCCCATCTG------TGTGTT-----ATCTAAATTCAGGTAGTGCTATCGTAGCCCTTCTGGCCAGCAGTGCAGCTACCGCCCCG-CCGSizeHit CountTotal NormTotal
No Reads
droFic1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGA-TCCATGTTCTCGAACC--TTT--AAACCATC---TTCCATATG------TGTGTC-----ACCTAAATCCAGGTAGTGCGATTGTTAATCTTCTGGCGAGCAGTGTAGCCACCGCCCCA-CCASizeHit CountTotal NormTotal
No Reads
droKik1
CCTTAATGCTTTGGAGTGGAGTATTTGTTTTACCAACAAATTAAACAATCGTGAGTAAATAAATTAAAAATATATATA---------------------------------------------------------------------------------------------------------------------------TATTGGACGATATTTTAAGTAAACAAA---GT----------------------CGGTAAATATTAA--AAC-----------CTAACTCTGAA------TTACTAACATATTTGGAAATTAACAATTAAAA--------ATATATTTTATTAACGGTA---ATTTAAATAATAAATAAATAATAATGTT----------------------------------A------------------------------------------TCTATAT--G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTGTTATTTAAGGGATAATTTATTAAATTAAATAAATTCCTTAAC----TAGCC------------------------------------------------------------CCTTAA--CCCATAACCCCATATTTTCCAGCA--TTTTAAATTCATC---TCTCTCACGTACATATTTCTT-----ACCTGCATCCAGGTAGTGCCGTTGTTACCCTCCTGGCCAGCAGTGCAGCCACCGCTCCG-CCTSizeHit CountTotal NormTotal
No Reads
droAna3
CCTAACCCGACTGGAGTGGAGCACTTGTCTGGCCAACGATTCAATCAATCGTAAGTGGAACTAG---C------TGTAGGATTGGA-TTTAGGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........GACTGGAGTGGAGCACTTGTCTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..TAACCCGACTGGAGTGGAGCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAGCGCCATCATGAATATGCTGGCGAGCAGTCC---------GCTT-CCASizeHit CountTotal NormTotal
No Reads
dp5
CCTGTCCCGCATCGAGTGGAGTCTTTGCCTGTTCAAAGATTCGCATAATCGTAAGTAAAGCTAT---TAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CAT------TTTCCTCAGTTTTTGCACTCGAAACTAACAAAAGATTTTGATACATATCGATTATTATCTTGAATAAAACTATAACCCA-----------GGGAGCGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------TAATT---------------------------------------------GGAGGATAATTA-CTAACTTCCATCAACATAATA--ATCACATC---TGGTATCTG------TGTGTTGTCTTGTCTGTATCCAGGTAGTGGCGCAGTTGATGTCCCCAATGGCAGCTTAGCCACGGCACCG-CCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---TGGTATCTG------TGTGTTGTCTTGTCTGTATCCAGGTAGTGGCGCAGTTGATGTCCCCAATGGCAGCTTAGCCACGGCACCGGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCTGAATTCGCTGGAGTGGAGCACTTGCCTATCCAAAGATGGCAATAATCGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CCTGTCCCGTCTGGAATGGAGCAATTGCCTGTCCAAAGATACCAGTCATCGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........GTCTGGAATGGAGCAATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
CCTGTCCCGTCTGGAGTGGAGCAGCTGCCTGACCAAAGATGCCAGTCAACGTAAGTAGCTCTTT---AAATA----TAATATAGAA-TACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATG------TGTGTA-----ATTCCCATGCAGGTAAAGCGGGCCTTAATATCCTGAACAGCAGTCCAACGAGCAGCTC-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:20 AM