ID:

dsi_14544

Coordinate:

3l:16449445-16449594 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-2.7	-2.5	-2.2

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

mature

star

Sense Strand Reads

CGTTTTTACGTTGATTTACTTTCGTTTGTTTTTGGTTTGCGCGGCAACGAGTGAGTGACTGTCTTTGTGTGTGTTAGTGTTTAGTGTGTGCATTGCTTTTTACTCCTGGCTAAATTACCTACCACAAAAATGCAATAAACTAACAGCGAGAAAAAGCCGTGTTTCAAAATAAAACACTCGAGTGCGGTGTTGTTGTTGTTGTTGTTCCTGCTGCTGCTGCTGCTGATATTCCAGAACTTGTTTTTGGCCT **************************************************************..(((.....((((((.........)))))).....)))...**********************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M053 female body	O002 Head	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M024 male body	M023 head
.................................................................................................................................................................................................................................ATATTCCTGAACTTG..........	15	1	10	1.20	12	12	0	0	0	0	0	0	0
.....................................................................................GTGTGCATTGCTTTTTACTCC................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................GTTTGTTTTTGGTTTGCG.................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
.GTTTTTACGTTGATTTACTTTCGTTTG..............................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0
..................................TTTTGCGCGGCAACG.........................................................................................................................................................................................................	15	1	10	0.50	5	5	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGATATTCCTGTACTAGTT........	19	3	20	0.50	10	0	6	0	0	0	0	3	1
................................................................TTGTGTGTGTTAGTGT..........................................................................................................................................................................	16	0	3	0.33	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................TGTTCCTGCTGCTTCTGATACTGA........................	24	3	4	0.25	1	1	0	0	0	0	0	0	0
........................TTTGTCTTTGGATTGCGCGTC.............................................................................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	1	0	0
.................................................................................................................ATGACCTACCACAAAA.........................................................................................................................	16	1	4	0.25	1	1	0	0	0	0	0	0	0
.................................GTTTTGCGCGGCAACG.........................................................................................................................................................................................................	16	1	4	0.25	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGTTGTTCCTGCTGCTG..................................	17	0	5	0.20	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................CTGATATTCCTGTACTAGTT........	20	3	8	0.13	1	0	1	0	0	0	0	0	0
.....................................TACGCGGCAACGAGTCCGT..................................................................................................................................................................................................	19	3	11	0.09	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................TGTTCCTGCTGCTTCTGATACTG.........................	23	3	20	0.05	1	1	0	0	0	0	0	0	0
....................................................................GTGTGTTAGTGATTAGA.....................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCTGCTGCTGCTGCT..........................	15	0	20	0.05	1	0	0	0	0	1	0	0	0

Anti-sense strand reads

GCAAAAATGCAACTAAATGAAAGCAAACAAAAACCAAACGCGCCGTTGCTCACTCACTGACAGAAACACACACAATCACAAATCACACACGTAACGAAAAATGAGGACCGATTTAATGGATGGTGTTTTTACGTTATTTGATTGTCGCTCTTTTTCGGCACAAAGTTTTATTTTGTGAGCTCACGCCACAACAACAACAACAACAAGGACGACGACGACGACGACTATAAGGTCTTGAACAAAAACCGGA **********************************************************************************************************************************************..(((.....((((((.........)))))).....)))...**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
......................................................................................................GAGGGTCGATCTAATGGATGGT..............................................................................................................................	22	3	1	1.00	1	1	0	0	0
...........................................................................................TAACGAAAAATGAGGAT..............................................................................................................................................	17	1	3	0.33	1	0	1	0	0
....................................................................................................................................................................................................................................AAGGTCTTGAACACAA......	16	1	5	0.20	1	0	0	1	0
...........................................................................................................................................................CGGCACAATGTCTTCTTTT............................................................................	19	3	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 04:56 AM