ID:

dsi_1452

 Coordinate:

2r:10471394-10471667 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.5 -32.4 -32.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTAAATATATCTAAGTATATAATATATAGGAAGTGGATATTATTCTCCAGAAAGAAAGAATTTTACTGCATTCTGAAATTCAAAAATGTTTCATTTAAATCCACAGTTTCATTTTATGCGATAAGAACTATTACAAATTTTGAGTTATAGAACTATGAATAATCCGCTATTTATATTTCTGGTCATACATTCCTTTATTTAATCCAATTTATTTCTTCTCTAAATTTGTGCTTAAATAAAATAATAAACTTTCCAATCGAATTCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGCA
**************************************************..........(((((((..(((((...))))).....))))))).............((((((((((..........((((((........))))))...........(((((.(((((((....((((......(((((((((.(((...(((((.((((((((......)))))))).)))))..................(((......)))......))).))))))))))))).)))))))...)))))........))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
..............................................................ATCTAAGTATATAATATATAGGA................................................................................................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0
..............................................................GTCTAAGTATATAATATATAGGA................................................................................................................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................CGAAGACAACGAAAAGCTCTACG................ 23 0 1 1.00 1 0 1 0 0 0
....................TCTCTACACCACTACCTACAG............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TTCAGGATCAGCTCAACGT.................................... 19 2 2 0.50 1 0 0 1 0 0
...................................................................................................................TTTACTGTATTCTGA.................................................................................................................................................................................................................................................... 15 1 6 0.33 2 0 0 0 2 0
..............................................................................................................................................................................................ATGTTGAGTTATAGA......................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1

Anti-sense strand reads

ATGCGACGCGCGGTCCTCCTAGAGATGTGGTGATGGATGTCGTGGTGTGTCATTCATTTATATAGATTCATATATTATATATCCTTCACCTATAATAAGAGGTCTTTCTTTCTTAAAATGACGTAAGACTTTAAGTTTTTACAAAGTAAATTTAGGTGTCAAAGTAAAATACGCTATTCTTGATAATGTTTAAAACTCAATATCTTGATACTTATTAGGCGATAAATATAAAGACCAGTATGTAAGGAAATAAATTAGGTTAAATAAAGAAGAGATTTAAACACGAATTTATTTTATTATTTGAAAGGTTAGCTTAAGAAAGTCTTAGTCGAGTTGCTTCTGTTGCTTTTCGAGATGCTTCTCGCAGATGTCGT
**************************************************..........(((((((..(((((...))))).....))))))).............((((((((((..........((((((........))))))...........(((((.(((((((....((((......(((((((((.(((...(((((.((((((((......)))))))).)))))..................(((......)))......))).))))))))))))).)))))))...)))))........))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M025
embryo
.....................GAGATATGGTGAAGGATGTGGT........................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............TCCTCCTAGAGATATGGAGATT................................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GATGGTTCCCGCAGATGT... 18 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTAATAAATTAGGTTA................................................................................................................ 16 1 8 0.50 4 0 0 0 3 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................TTGCTTCGGTTGCTTTGCAAG.................... 21 3 6 0.50 3 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AAAGAAGAGATTTAA.............................................................................................. 15 0 4 0.50 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GATGGTTCCGGCAGATGTCG. 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................AAGTGACTTAAGACGTTAAGT.............................................................................................................................................................................................................................................. 21 3 12 0.25 3 0 0 0 0 2 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................................GATGGTTCCCGCAGATG.... 17 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................ATGGTTCCGGCAGATGTCGT 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TTGCTTCGGTTGCTTT......................... 16 1 17 0.24 4 0 0 4 0 0 0 0 0 0 0
..............................TGAAGGATGTCGTGGTTT...................................................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................TGCCCTAAGACTTTAAGTGT............................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................GGATGGTTCCCGCAGATGT... 19 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGTTTCTTACGTTGCTTTTCG...................... 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TTGCCTTTCGAGATG................. 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0
....................AGAGATGTGTTGGTGGA................................................................................................................................................................................................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0
............................GGGGATGGATGTCGTC.......................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................ACGGTATTATTGCTAATGTTT....................................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................AAAATTAGGTGTCAAA................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CTGTTGCTTTTCGGG.................... 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................AAAGGTCGGCTTAAGAAA..................................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................................................AGGTTAGTTTAGGAAAGT................................................... 18 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................AGATGCTTCTCGGAA....... 15 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................AGTGACTTAAGACCTTAAGT.............................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TTTTCTTGATAATGT......................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10471344-10471717 - dsi_1452 TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTAAATATA-T-C-------TAA--GTA----------TATAAT-ATATAGG-----------------------------------A------------------AGTGG--ATATTATTCTCCAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCTGAAATTCA-AA-----AATGTTTCATTTAAATCCACAGTTT-C-ATTTTATGCG-------------------------------------ATAAGAACTATTACAAATTT-TG----AGTTATAGAACTAT-----------GAATAATCCGCTATTTATATTTCTGGTCATACATTCCTTTATTTAATCCAATTTATTT-----------------------------------------------------------------------------------------------------------C-------------------------TTC---TCTAAATTTGTGCTTAAATAAAA-------------------TAATAAACTTTCCAAT---------CGAATTCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGCA
droSec2 scaffold_1:7308913-7309289 - TACGCTGCGCGTCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTAAATGTA-T-C-------TAA--GTA----------TATAAT-ATATAGG-----------------------------------A------------------AGTGG--ATATTATTCTCCAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCCGAAATCAA-AA-----AATGTTTCATTTAAATCAACAGTTT-C-ATGTTATGCG-------------------------------------ATAAGAACTATTACAAATTT-TGACAAAGTTATAGAACTAT-----------GAATAACCCCCTATTTATATTTCTGGTCATACATTCCTTTATTTAATCCACTTTATTT-----------------------------------------------------------------------------------------------------------C-------------------------TTC---TCTAAATTTGTGTTTAAATTAAA-------------------TAATAAAA-TTCCAAT---------CGAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGTA
dm3 chr2R:9782048-9782393 - TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTACAATTTATAC-------AAA--ATT----------TATAAT-ATATATT-----------------------------------A------------------AGTGG--ATATTATTCTCCAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCTGAAATCAACAA-----AATGATTCATTTAAATCTACAATCTACAATATTATGCG-------------------------------------AAAGAAACGATAACAACTTT-TGACAAAGTTGTAGAACTAT-----------GAATAATCTTATATGTAGATTTGTAGTCATACATTCTTTTATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATAAAG-TTCTAAT---------CGAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTATAGTA
droEre2 scaffold_4845:16037364-16037724 + der_1164 TACGCTGCGCGCCCGGAGGATCTCTACACCACTACCTACAGCACCACACAGTGAGTACATGTA-T-C-------CAA--ATA----------TATAAT-CTATATC------------------------AAAAATATCTCG------------------AGCGA--AAAATAATCTCCGGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCTAGAATCCA-AAATCCAAATG-TTTATTTTAATCAATTGTTT-C-ATGTTATCCA-------------------------------------AAAGAAACGATAGCAAAGTTTT-----------------CA-----------GTATAATTTTGTATGTAGATTTCGAGTCATACATTCCTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAAAACTAAAAGCCACCAT------GCACTAATGAAG-TTCTAAT---------CTAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGTA
droYak3 2R:7171331-7171708 + dya_477 TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTTCGTGTA-T-C-------TAA--GTACTAAGGA---TCTAAT-ACATATC------------------------AAAAATATGTTG--A--------------A---AA--TATATAACCTCTAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------AG----------------------------------------------------------------------------------------------------CAT--------TCCAAAATCTA-AA-----ATTG-TTCATTTTAATCAACTGTTT-C-A-------------------------------------------------------------------------AGTCGTTGAATTAT-----------GAATAATTTTTTATGTAGATTTCCAGTCATACATTCCTTTATCTAAACCA--TAAATT-----------------------------------------------------------------------------------------------------------C-------------------------TTCATATATAAATTTGTTTTCAAATTAAGAGTCACCACTAGTCAACACTAATAAAG-TTATAAT---------CCAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACGGTA
droEug1 scf7180000409462:3070199-3070706 + TACGCTGCACGCCAGGAGGATCTCTACACCACTACCTATAGCACTACACAGTGAGTATATCTG-A-A----------A----------------------GATCAA-----------------------------------G------------------AGTAGCTATAATATTCTTCAGTTAGGAGAGATATAAGATTAAGTTTATTATTTTAATTTAATTTTTTTGAGTTTTTTGCCGTCAAAAATAAAATACTTTTCAGATTATTCATTAATCAAAAACAGAAATTTTGTAATAAAAATAAA-------------------------------------------------------------------------CAACAGACGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------------TCAGC------------TATGTGATTATCAGAAACTTTTTTTTGGTTT-----TTATCTAAGA-AAATTTTCACAAATTT-TT----AA--AGAAAACCAC-----------GAAA--------GTCTAGACTTCCTCTTACAAATTCCTTTGTTTTATC-----------AAAGTTT----TATCCAAATT-TTATAAACCTTTATAAAGAATTC-ATAAAAACTTTATTAAACTAAAGT---------------------------------------TTC-TATAACCCTACTTACCATTT--------------------------------------------------------TCCCAAC----CCATT--TCCCCTTACAGATTCAGCTCAACGAAAACAACGAAAAGCTCTACGAAGAGCGTCTACAATA
droBia1 scf7180000302291:349802-349909 + TACGTTGCGCGCCAAGAAGATCTGTACACCACAACCTACAGCACCACACAGTGAGTATTAA------------------A-----------------------------------------------------AATAAAATG--TAGTGTAAGATCTTTA---AA--AAAATATTTTCCAGAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415401:850235-850735 + TACGCTGCGCGCCCGGAAGATCTCTACACCACCACCTACAGCACCACACAGTGAGTATTTGAA--------------AT-------AAACTTTATATTTCGATATCCCATTCTTCAGAACTCTTAATCAT---AATAAAATG--TAGTCTGA-----------------------------ATAATAAAGATATCAGAAT-----------------TTAAAT--------------------------------------------------------------------------------------------CA---------TTCAAAT---AATTTAAATGT--TTTTTTTCGGAAATACACTTCAAAATAAAAAAACACTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------------TCAACGGTTT-C-ATT----------C---G--AATTACTTGTGGTTTAAATTATATCCAAAAGAAAGAACAACTATTCC-GGAGAAACTCAT-----------------------------------------------TT-AATTTCTTCATTTTATC-----------AGATTTTTTCTTATCAAGGTC-ATATAAAT---TCTTTGTTACTTTTT------------------GAAT-TTGTTTCATTATGAATAATTTAAATG-------GAACTTGCAA---------ATAA----------------CTTAACTTGCAAATTAAGAGTGCT----------TTCTAATGAAT-TTCTAAA---------CCCTACCTTGCAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTATACAGTA
droEle1 scf7180000491271:116749-116811 - CACGCTACGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTATATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779816:55462-55907 + TACACTGCGCGCCAAGAGGATCTCTACACCACTACCTACAGCACCACACAGTGAGTAAATCTA-A-A----------AT---C---AAA--------------------------------------------------------------------------------------CTTCACTTATGAAA-----------------------------------------------------------------------------------------------------------------AATGCATCAAAACCATAAATATTTTCCAAATGCAGATGAAGATGATTTTTTATTTGGAAAAGTTTTTTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTG-AAATTCACATA-TTTC--------------------TT----------A---A--AGTTATTTGTTTATTAAACT------------------TACTGTTAT-GAAGAG-TTAAA----TTATTTTTTAAAACT---------------------------TAACACTTCATGTGTTATTTCGAGTGTAGATTAAAATATTTCATATCGAAACTAAAATAAAT---TCTAAGGAATTC-ATGA-------------CTAGAGTGATGTTTGACTACCATTAATTTAAAAAATTTTATGAATTCCCGA---------ATGACTAATTGG---CT--------------------------------------ACAAAT-----------------------GGTTTTTGCAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACAAAGAGCGTCTACAATA
droFic1 scf7180000454066:1832296-1832364 + TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---------TACAACCTTGCAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTTTACAGTA
droKik1 scf7180000301798:111164-111232 - CCTTCCACTCACTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAACGTCTTCAGTA
droAna3 scaffold_13266:17084725-17085037 - TACGCTGCACGCCCGGAGGATCTCTACACCACCACCTACAGCACCACACAGTGAGTATCAGTT-T-T-------CAG--TTA----------T----------------------------------------AATAGAATGAATAGTGTTCACTTCTAAAATGA--ATATTCATCTTCTTGCAGAATGA---------------------------------------------------------------------------------------------------------------------ATCTAGTTCAT---------CTTCTTGC-------------------------------------------------------------------------------------------AGAA----TGAATCTAGTTCACTTTCTTGTAAAATGAATCTGTT--------------------------------CA----------------------------------------------------------------------------------------------------CTT--------TCTAAAATGAACA-----------------------------------------------------------------------------------------------------------------------------------CT----------------------------TTTCACTCCTTTATT------A------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTCATTCTTATATTCA--------------------------TTTC--CCCTTTC--TCCCTCCACAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGTA
droBip1 scf7180000396735:331166-331222 - TACGCTGCACGCCCGGAGGATCTCTACACCACCACCTACAGCACCACACAGTGAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:8057923-8057987 - CATGCTGCACGCCCGGAGGATCTCTACACGACCACCTACAGCACCACACAGTGAGTAAATCTA-T-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:1971424-1971488 - CATGCTGCACGCCCGGAGGATCTCTACACGACCACCTACAGCACCACACAGTGAGTAAATCTA-T-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004822:1427759-1428064 + AATGCTGCACGCCAAGAGGATCTCTATACTACTACCTACAGCACCACACAGTGAGTAGAGCTA-T-A----------AA---CTGGGAA--------------------------------------------------------------------------------------TTTTACCCTTAAAG-----------------------------------------------------------------------------------------------------------------TATG-------------------------------------------------------------------------CAATAGGTAGGACATAAAAGTTACAAATCTCAACTATTGGAATGTGCAGAAGTTAAGAACTTAG----C-------------------GTTTGCTTTAGTAAATGAACTTTTCGACTGCCGATTGCATACTTTAAGGGGAAAATGTG--------------------------------------------------------------------------------------------------------TGCA------------------ATTG---------------------------------------------------------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---TT--------------------------------------ACTAAA--AG------------TAT--TTATCATTTTCAGATTTAGCTCAACGAAGACAACGAAAAGCTCAAGTAAGAGCATTTATAGTA
droVir3 scaffold_12875:6292085-6292407 + TATGCTGCACGCCCGGATGATCTCTATACCACGACATATAGCACAACACAGTAAGTAAAGTTT-C-TAAAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATTGAGTACACTCAAAAATAAA---------------GAAGAAATATATATATATAAAAATTAAATTAGATGATAGAAGAAATAAATGACATAAACTTTAATTACAT--------TCTAATT---T-GGATTCAATTG-TATATTT------------------------------------------------------------------------------------------------------------------------------------------TGAACTTAAATTAGTTTATTTTTTTGAGTGTAGTT-----------------------------------------------------------------------------------------------------------ATTCCATA---------GTTTCAAGTGTA---TT--------------------------------------ACATAT--------TTTT---------CGTTTTTCTTCAGATTCAGCTCAACGAAAACAACGAAAAGCTCCTCGAAGAGCATTTACAGCA
droMoj3 scaffold_6496:23737095-23737330 - TATGCTGCACGCCCGGATGATCTCTATACAACAACATATAGCACAACACAGTAAGTGAAATTG-C-CATAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTAAATACACTTAGAAAAAAATGTAAATTTTAATATGAAGACATT----AGAGCAAAAATCAAATTAGAT--------------------TACACTTTTCTTACATCAATTGTTTCT----------GATTCA------------------ATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAGATTCAGCTCAACGAAAACAACGAAAAGCTCTTCAAAAAGCATATACAGCA
droGri2 scaffold_15112:1181130-1181245 + ACTTTTTCCCTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATTAGTTAAATATC-----------------ATAATA-TTTTAACATGCTCTTT--TCCCACTTTAGATTCAGCTCAACGAAGACAACGAAAAGCTCCTCGAAGAGCATTTACAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTAAATATA-T-C-------TAA--GTA----------TATAAT-ATATAGG-----------------------------------A------------------AGTGG--ATATTATTCTCCAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCTGAAATTCA-AA-----AATGTTTCATTTAAATCCACAGTTT-C-ATTTTATGCG-------------------------------------ATAAGAACTATTACAAATTT-TG----AGTTATAGAACTAT-----------GAATAATCCGCTATTTATATTTCTGGTCATACATTCCTTTATTTAATCCAATTTATTT-----------------------------------------------------------------------------------------------------------C-------------------------TTC---TCTAAATTTGTGCTTAAATAAAA-------------------TAATAAACTTTCCAAT---------CGAATTCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................A-T-C-------TAA--GTA----------TATAAT-ATATAGG-----------------------------------A------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGACAACGAAAAGCTCTACG................2311.00100000000000001000
....................TCTCTACACCACTACCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
droSec2
TACGCTGCGCGTCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTAAATGTA-T-C-------TAA--GTA----------TATAAT-ATATAGG-----------------------------------A------------------AGTGG--ATATTATTCTCCAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCCGAAATCAA-AA-----AATGTTTCATTTAAATCAACAGTTT-C-ATGTTATGCG-------------------------------------ATAAGAACTATTACAAATTT-TGACAAAGTTATAGAACTAT-----------GAATAACCCCCTATTTATATTTCTGGTCATACATTCCTTTATTTAATCCACTTTATTT-----------------------------------------------------------------------------------------------------------C-------------------------TTC---TCTAAATTTGTGTTTAAATTAAA-------------------TAATAAAA-TTCCAAT---------CGAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAAAGCTCTACGAAGAGC..........2311.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGAAAAGCTCTACGAA..............2011.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGAAAAGCTCTACGAAGA............2211.0010010
......GCGCGTCAGGAGGATCTCTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
TACGCTGCGCGTCAGGAGGATCTCTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAAAGCTCTACGAAGAG...........2211.0010010
dm3
TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTACAATTTATAC-------AAA--ATT----------TATAAT-ATATATT-----------------------------------A------------------AGTGG--ATATTATTCTCCAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCTGAAATCAACAA-----AATGATTCATTTAAATCTACAATCTACAATATTATGCG-------------------------------------AAAGAAACGATAACAACTTT-TGACAAAGTTGTAGAACTAT-----------GAATAATCTTATATGTAGATTTGTAGTCATACATTCTTTTATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATAAAG-TTCTAAT---------CGAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTATAGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAGACAACGAAAAGCTCT...................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAATATTATGCG-------------------------------------AAAGAAA....................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTCAACGAAGACAACGAAAAGC......................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGACAACGAAAAGCTCTACGAAG.............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACGCTGCGCGCCAGGAGGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAT---------CGAATCCTTTCAG..................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCTCAACGAAGACAACGA...........................2312.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCTCAACGAAGACAACGAAA.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GCGCGCCAGGAGGATCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTACACCACTACCTACAGCACCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTCAACGAAGACAA..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAAGCTCTACGAAG.............1811.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAACGAAAAGCTCTACGAA..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GCGCGCCAGGAGGATCTCTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAAGCTCTACGAAGAG...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAACGAAAAGCTCTACGAAGAG...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAACGAAAAGCTCTACGAAGA............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..CGCTGCGCGCCAGGAGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCTCAACGAAGACAACGAA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCGCGCCAGGAGGATCTCTACACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAAGCTCTACGAAGA............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCAACGAAGACAACGAAAA........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TACGCTGCGCGCCAGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAAAGCTCTACGAA..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGCCAGGAGGATCTCTACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....CTGCGCGCCAGGAGGATCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTACGAAGAGCGTCTATAG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............AGGAGGATCTCTACACCACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGAAGACAACGAAAAGCTCTACGAA..............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGGATCTCTACACCACTACCTACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACACCACTACCTACAGCACCACACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCTACAATCTACAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTT-TGACAAAGTTGGG.........................................................................................................................................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
TACGCTGCGCGCCCGGAGGATCTCTACACCACTACCTACAGCACCACACAGTGAGTACATGTA-T-C-------CAA--ATA----------TATAAT-CTATATC------------------------AAAAATATCTCG------------------AGCGA--AAAATAATCTCCGGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTA----C------------------------------------------------------TG----------------------------------------------------------------------------------------------------CAT--------TCTAGAATCCA-AAATCCAAATG-TTTATTTTAATCAATTGTTT-C-ATGTTATCCA-------------------------------------AAAGAAACGATAGCAAAGTTTT-----------------CA-----------GTATAATTTTGTATGTAGATTTCGAGTCATACATTCCTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTAAAACTAAAAGCCACCAT------GCACTAATGAAG-TTCTAAT---------CTAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGACAACGAAAAGCT.....................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCTCTACGAAGAGCGTCT......2311.0010000100
.......................CTACACCACTACCTACAGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACGAAAAGCTCTACGAAGAGC..........2611.0010000010
............CCGGAGGATCTCTACACCACTACCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAT------GCACTAATGAAG-TTCTAAT---------...............................................................2511.0010100000
....................................................................................................TATATC------------------------AAAAATATCTCG------------------AGCGA--AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCTCAACGAAGACAACGAAAA........................2611.0010000100
.........CGCCCGGAGGATCTCTACACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.........................ACACCACTACCTACAGCACCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCCA-AAATCCAATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510001000
droYak3
TACGCTGCGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTTCGTGTA-T-C-------TAA--GTACTAAGGA---TCTAAT-ACATATC------------------------AAAAATATGTTG--A--------------A---AA--TATATAACCTCTAGAAAGAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTA----C------------------------------------------------------AG----------------------------------------------------------------------------------------------------CAT--------TCCAAAATCTA-AA-----ATTG-TTCATTTTAATCAACTGTTT-C-A-------------------------------------------------------------------------AGTCGTTGAATTAT-----------GAATAATTTTTTATGTAGATTTCCAGTCATACATTCCTTTATCTAAACCA--TAAATT-----------------------------------------------------------------------------------------------------------C-------------------------TTCATATATAAATTTGTTTTCAAATTAAGAGTCACCACTAGTCAACACTAATAAAG-TTATAAT---------CCAATCCTTTCAGAATCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACGGTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTATAAT---------CCAATCCTTTCAG..................................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACGAAAAGCTCTACGAAG.............2311.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAACGAAAAGCTCTACGAAGA............2611.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACGAAAAGCTCTACGAAGAGCGT........2811.00100000010000
TACGCTGCGCGCCAGGAGGATCTCTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACGAAAAGCTCTACGAAGAG...........2511.00100100000000
droEug1
TACGCTGCACGCCAGGAGGATCTCTACACCACTACCTATAGCACTACACAGTGAGTATATCTG-A-A----------A----------------------GATCAA-----------------------------------G------------------AGTAGCTATAATATTCTTCAGTTAGGAGAGATATAAGATTAAGTTTATTATTTTAATTTAATTTTTTTGAGTTTTTTGCCGTCAAAAATAAAATACTTTTCAGATTATTCATTAATCAAAAACAGAAATTTTGTAATAAAAATAAA-------------------------------------------------------------------------CAACAGACGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------------TCAGC------------TATGTGATTATCAGAAACTTTTTTTTGGTTT-----TTATCTAAGA-AAATTTTCACAAATTT-TT----AA--AGAAAACCAC-----------GAAA--------GTCTAGACTTCCTCTTACAAATTCCTTTGTTTTATC-----------AAAGTTT----TATCCAAATT-TTATAAACCTTTATAAAGAATTC-ATAAAAACTTTATTAAACTAAAGT---------------------------------------TTC-TATAACCCTACTTACCATTT--------------------------------------------------------TCCCAAC----CCATT--TCCCCTTACAGATTCAGCTCAACGAAAACAACGAAAAGCTCTACGAAGAGCGTCTACAATASizeHit CountTotal NormTotal
No Reads
droBia1
TACGTTGCGCGCCAAGAAGATCTGTACACCACAACCTACAGCACCACACAGTGAGTATTAA------------------A-----------------------------------------------------AATAAAATG--TAGTGTAAGATCTTTA---AA--AAAATATTTTCCAGAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TACGCTGCGCGCCCGGAAGATCTCTACACCACCACCTACAGCACCACACAGTGAGTATTTGAA--------------AT-------AAACTTTATATTTCGATATCCCATTCTTCAGAACTCTTAATCAT---AATAAAATG--TAGTCTGA-----------------------------ATAATAAAGATATCAGAAT-----------------TTAAAT--------------------------------------------------------------------------------------------CA---------TTCAAAT---AATTTAAATGT--TTTTTTTCGGAAATACACTTCAAAATAAAAAAACACTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------------TCAACGGTTT-C-ATT----------C---G--AATTACTTGTGGTTTAAATTATATCCAAAAGAAAGAACAACTATTCC-GGAGAAACTCAT-----------------------------------------------TT-AATTTCTTCATTTTATC-----------AGATTTTTTCTTATCAAGGTC-ATATAAAT---TCTTTGTTACTTTTT------------------GAAT-TTGTTTCATTATGAATAATTTAAATG-------GAACTTGCAA---------ATAA----------------CTTAACTTGCAAATTAAGAGTGCT----------TTCTAATGAAT-TTCTAAA---------CCCTACCTTGCAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTATACAGTASizeHit CountTotal NormTotal
No Reads
droEle1
CACGCTACGCGCCAGGAGGATCTCTACACCACTACCTACAGCACCACACAGTAAGTATATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TACACTGCGCGCCAAGAGGATCTCTACACCACTACCTACAGCACCACACAGTGAGTAAATCTA-A-A----------AT---C---AAA--------------------------------------------------------------------------------------CTTCACTTATGAAA-----------------------------------------------------------------------------------------------------------------AATGCATCAAAACCATAAATATTTTCCAAATGCAGATGAAGATGATTTTTTATTTGGAAAAGTTTTTTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTG-AAATTCACATA-TTTC--------------------TT----------A---A--AGTTATTTGTTTATTAAACT------------------TACTGTTAT-GAAGAG-TTAAA----TTATTTTTTAAAACT---------------------------TAACACTTCATGTGTTATTTCGAGTGTAGATTAAAATATTTCATATCGAAACTAAAATAAAT---TCTAAGGAATTC-ATGA-------------CTAGAGTGATGTTTGACTACCATTAATTTAAAAAATTTTATGAATTCCCGA---------ATGACTAATTGG---CT--------------------------------------ACAAAT-----------------------GGTTTTTGCAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACAAAGAGCGTCTACAATASizeHit CountTotal NormTotal
No Reads
droFic1
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---------TACAACCTTGCAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTTTACAGTASizeHit CountTotal NormTotal
No Reads
droKik1
CCTTCCACTCACTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAACGTCTTCAGTASizeHit CountTotal NormTotal
No Reads
droAna3
TACGCTGCACGCCCGGAGGATCTCTACACCACCACCTACAGCACCACACAGTGAGTATCAGTT-T-T-------CAG--TTA----------T----------------------------------------AATAGAATGAATAGTGTTCACTTCTAAAATGA--ATATTCATCTTCTTGCAGAATGA---------------------------------------------------------------------------------------------------------------------ATCTAGTTCAT---------CTTCTTGC-------------------------------------------------------------------------------------------AGAA----TGAATCTAGTTCACTTTCTTGTAAAATGAATCTGTT--------------------------------CA----------------------------------------------------------------------------------------------------CTT--------TCTAAAATGAACA-----------------------------------------------------------------------------------------------------------------------------------CT----------------------------TTTCACTCCTTTATT------A------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTCATTCTTATATTCA--------------------------TTTC--CCCTTTC--TCCCTCCACAGATTCAGCTCAACGAAGACAACGAAAAGCTCTACGAAGAGCGTCTACAGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......GCACGCCCGGAGGATCTCTACACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002
.......CACGCCCGGAGGATCTCTACACCACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAAAAGCTCTACGAAGAGCGT........2711.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAGAGCGTCTACAGT.1911.001010000
......................TCTACACCACCACCTACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------ATCTAGTTCAT---------CTTCTTGC-------------------------------------------------------------------------------------------AGAA----T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAAGAGCGTCTACAGTA2111.001000010
droBip1
TACGCTGCACGCCCGGAGGATCTCTACACCACCACCTACAGCACCACACAGTGAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CATGCTGCACGCCCGGAGGATCTCTACACGACCACCTACAGCACCACACAGTGAGTAAATCTA-T-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CATGCTGCACGCCCGGAGGATCTCTACACGACCACCTACAGCACCACACAGTGAGTAAATCTA-T-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATGCTGCACGCCAAGAGGATCTCTATACTACTACCTACAGCACCACACAGTGAGTAGAGCTA-T-A----------AA---CTGGGAA--------------------------------------------------------------------------------------TTTTACCCTTAAAG-----------------------------------------------------------------------------------------------------------------TATG-------------------------------------------------------------------------CAATAGGTAGGACATAAAAGTTACAAATCTCAACTATTGGAATGTGCAGAAGTTAAGAACTTAG----C-------------------GTTTGCTTTAGTAAATGAACTTTTCGACTGCCGATTGCATACTTTAAGGGGAAAATGTG--------------------------------------------------------------------------------------------------------TGCA------------------ATTG---------------------------------------------------------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---TT--------------------------------------ACTAAA--AG------------TAT--TTATCATTTTCAGATTTAGCTCAACGAAGACAACGAAAAGCTCAAGTAAGAGCATTTATAGTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
AATGCTGCACGCCAAGAGGATCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.00700070
AATGCTGCACGCCAAGAGGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200
......GCACGCCAAGAGGATCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
AATGCTGCACGCCAAGAGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACGAAAAGCTCAAGTAAGAGC..........2611.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAAAGCTCAAGTAAGAGC..........2211.00100010
..TGCTGCACGCCAAGAGGATCTCTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
AATGCTGCACGCCAAGAGGATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAAAGCTCAAGTAAGA............2111.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAGACAACGAAAAGCTCA...................2311.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACGAAGACAACGAAA.........................2011.00100010
AATGCTGCACGCCAAGAGGATCTCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAAAGCTCAAGTAAGAGCATTT......2711.00100010
..................GATCTCTATACTACTACCTACAGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACGAAGACAACGAAAA........................2011.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTG--------------------------------------------------------------------------------------------------------TGCA------------------ATTG---------------------------------------------------------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---..................................................................................................................................2011.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAAGAGCATTTATAG..1911.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAAAATGTG--------------------------------------------------------------------------------------------------------TGCA------------------ATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTG--------------------------------------------------------------------------------------------------------TGCA------------------ATTG---------------------------------------------------------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................2111.00100010
droVir3
TATGCTGCACGCCCGGATGATCTCTATACCACGACATATAGCACAACACAGTAAGTAAAGTTT-C-TAAAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATTGAGTACACTCAAAAATAAA---------------GAAGAAATATATATATATAAAAATTAAATTAGATGATAGAAGAAATAAATGACATAAACTTTAATTACAT--------TCTAATT---T-GGATTCAATTG-TATATTT------------------------------------------------------------------------------------------------------------------------------------------TGAACTTAAATTAGTTTATTTTTTTGAGTGTAGTT-----------------------------------------------------------------------------------------------------------ATTCCATA---------GTTTCAAGTGTA---TT--------------------------------------ACATAT--------TTTT---------CGTTTTTCTTCAGATTCAGCTCAACGAAAACAACGAAAAGCTCCTCGAAGAGCATTTACAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAAACAACGAAAAGCTCCTCGA...............2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAAAGCTCCTCGAAGA............2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAAGCTCCTCGAAGAGCAT........2311.001000000000000000100000000000000000000000000000000000000000000000
..............................ACGACATATAGCACAACACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.........................ATACCACGACATATAGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........CGCCCGGATGATCTCTATACCACGACATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000010000
.........................ATACCACGACATATAGCACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTG-TATATTT------------------------------------------------------------------------------------------------------------------------------------------TGAACT..........................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGAAAACAACGAAAA........................1911.001000000000000000000000100000000000000000000000000000000000000000
.........CGCCCGGATGATCTCTATACCACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
TATGCTGCACGCCCGGATGATCTCTATACAACAACATATAGCACAACACAGTAAGTGAAATTG-C-CATAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTAAATACACTTAGAAAAAAATGTAAATTTTAATATGAAGACATT----AGAGCAAAAATCAAATTAGAT--------------------TACACTTTTCTTACATCAATTGTTTCT----------GATTCA------------------ATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAGATTCAGCTCAACGAAAACAACGAAAAGCTCTTCAAAAAGCATATACAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......GCACGCCCGGATGATCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
droGri2
ACTTTTTCCCTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATTAGTTAAATATC-----------------ATAATA-TTTTAACATGCTCTTT--TCCCACTTTAGATTCAGCTCAACGAAGACAACGAAAAGCTCCTCGAAGAGCATTTACAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:37 AM