ID:

dsi_14515

Coordinate:

3l:7851826-7851975 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-18.0	-17.9	-17.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TACAGAAAATGAGGCCTCGGGGCGGCAACTGTCTCTCTACTCCTTCTTAGGTCTGTTGATAAAGCGAAAAACTTACTAAATATTTATTTATTTAGTTTATCACCTTTTTTGTTCATACTTCTTTTTATCTATTTTCCTACCCTTTGCAAATGTGTATAGAACCAAATGAAAAAAAAAGGAAACAAAAAAAGAACAACTTATTTAGTTTTAACCATTTCCTTATAATTAACTTTTAATTTTTAGTTATAAC ************************************************......((((((............((((((((......))))))))))))))((((((((.(((((..((((...(((.(((((.............))))).))).))))....))))).)))))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
..................................................................................................................................................................................GAAACAAAAAAAGAACAA......................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................TTAGATTCAACCATTTCCTTC............................	21	3	2	0.50	1	0	1	0	0	0	0	0
.........................................................................................................................................................................CATAAAAAGGAAACAAAAAAAG...........................................................	22	2	3	0.33	1	0	0	1	0	0	0	0
..............................................TTAGGTCTGATGTGAAAGC.........................................................................................................................................................................................	19	3	14	0.21	3	0	0	0	3	0	0	0
..........................................................................................................................................................TATAGACCCAGCTGAAAAAAA...........................................................................	21	3	10	0.10	1	0	0	0	0	1	0	0
........................................................................................................................................................................AAAAAATAAGGAAACAAAA...............................................................	19	1	15	0.07	1	0	0	0	0	0	1	0
....................................................TTGTTGACAAAGCGAAAA....................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1
...............................................................................................................................................................................AAGGAGACATAAAAAGAA.........................................................	18	2	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

ATGTCTTTTACTCCGGAGCCCCGCCGTTGACAGAGAGATGAGGAAGAATCCAGACAACTATTTCGCTTTTTGAATGATTTATAAATAAATAAATCAAATAGTGGAAAAAACAAGTATGAAGAAAAATAGATAAAAGGATGGGAAACGTTTACACATATCTTGGTTTACTTTTTTTTTCCTTTGTTTTTTTCTTGTTGAATAAATCAAAATTGGTAAAGGAATATTAATTGAAAATTAAAAATCAATATTG ************************************************......((((((............((((((((......))))))))))))))((((((((.(((((..((((...(((.(((((.............))))).))).))))....))))).)))))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
............................................................................................................AACAAGTCTTAAGAAAAATAG.........................................................................................................................	21	2	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................AGGAATATTAATTGAAAG................	18	1	1	1.00	1	0	1	0	0
........................................................................................................AAAAAAGAAGTATGCAG.................................................................................................................................	17	2	20	0.10	2	0	0	0	2
.......................CCGTTGACAGAGTGCTG..................................................................................................................................................................................................................	17	2	10	0.10	1	0	0	1	0
...............................................................................................................................................................................TTCCTTTGTTATTGTCTTG........................................................	19	2	18	0.06	1	0	0	1	0
...............................................................................................................AGGTATGAAGAAAAA............................................................................................................................	15	1	20	0.05	1	0	0	1	0
..........................TTGTCAGAGAGACGAGGAG.............................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0

Generated: 04/24/2015 at 10:30 AM