ID:

dsi_14490

 Coordinate:

3l:11217285-11217434 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.3 -17.1 -17.1 -16.9

Flybase annnotation

CDS [3l_11217435_11218077_+]; exon [3l_11217435_11218077_+]; intron [3l_11212031_11217434_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAACTGCTTCGCATCTGTGCTAATTTGATAAGTTTTCTTTGAATGCTTAAAGTGCTTATTTACTGTTAGAATTCTGGTGATTCGCAAACTTAGGTACTGGAATATTAAAAAATAATGTAATTTTTAAAGTAATTAAATGAAATATACATAAATGTTCCACTTGAATCTTAGCTAATACCTTTAATTTCTTTTTTTTTAGACTGGCAAGCTTCGACGGCGCCGTTGGAGGAGGAGGAGGAGCTGAACGCA
**************************************************.....((.............((((..(((.(((.((.((.(((((...(((((((((........(((((..(((((...........)))))..))))).))))))))))))))...)).)).))))))...))))...........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR1275483
Male prepupae		 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................................................................................TAAAGACTGGCAAGCTTCGACGGCGC............................. 26 2 1 3.00 3 2 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGCCGTTGGAGGAGGAGGAGGAGC........ 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................TCTGGTGATTCGCAAACTTAGGTACTG...................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TAAAGACTGGCAAGCTTCGACGGC............................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCGACGGCGCCGTTGGA...................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAGACTGGCAAGCTTCGACGGC............................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TTAAAGACTGGCAAGCTTCGACGGCGCC............................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACTGGCAAGCTTCGACGGC............................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................AGGAGGAGGAGCTGAACG.. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................TGCCTTTAATTTCTCTTTTTTTTGA................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................TGTTAGAAATTTGGTGATTGGCA................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACTGCGCCGTTGGAGGA................... 17 1 3 0.33 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGAGGAGGAGGAGGAGCT....... 18 0 9 0.22 2 0 0 0 0 0 1 0 1 0
................................................................................ATACGCAAACTCAGGTGCTG...................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0
...........................................................................................TAGGTTTTGGGATATTAAAAA.......................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 0 0 1
......................AATTGGATAAGTTTT..................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CTTTGACGAAGCGTAGACACGATTAAACTATTCAAAAGAAACTTACGAATTTCACGAATAAATGACAATCTTAAGACCACTAAGCGTTTGAATCCATGACCTTATAATTTTTTATTACATTAAAAATTTCATTAATTTACTTTATATGTATTTACAAGGTGAACTTAGAATCGATTATGGAAATTAAAGAAAAAAAAATCTGACCGTTCGAAGCTGCCGCGGCAACCTCCTCCTCCTCCTCGACTTGCGT
**************************************************.....((.............((((..(((.(((.((.((.(((((...(((((((((........(((((..(((((...........)))))..))))).))))))))))))))...)).)).))))))...))))...........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
........................................................................................GGAATCCATGCCCTTATA................................................................................................................................................ 18 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................TTTAGTTTATATGTATTTAC............................................................................................... 20 1 3 1.00 3 0 3 0 0 0 0 0
...................................................................................................................................................................................................................................TCCTCCTCCTCCTCGACT..... 18 0 3 1.00 3 0 0 0 3 0 0 0
.............................................................................................CCATGCCCTTATAATT............................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................TCCATGTCCTTATAATTG............................................................................................................................................ 18 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................TCCATGTCCTTATAATT............................................................................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................TTAGTTTATATGTATTTAC............................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................AAAAAAATATCTGACCGCT.......................................... 19 2 3 0.33 1 0 0 0 0 1 0 0
........................................................................................................................................TTAGTTTATATGTATTTA................................................................................................ 18 1 17 0.12 2 0 2 0 0 0 0 0
.............................................................................................................................................................................................AAAAAAAAATGTGACCGTTT......................................... 20 2 10 0.10 1 0 0 0 0 0 1 0
.................................................................................................................................................ATGTATTGACTAGGTGAAA...................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0
.......................................................................................................................................TTTAGTTTTTATGTATTTACTAG............................................................................................ 23 3 11 0.09 1 0 1 0 0 0 0 0
.........................................................................................GCAGCCATGACCTTATA................................................................................................................................................ 17 2 12 0.08 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................AATGTGACCATTCGAAG..................................... 17 2 12 0.08 1 0 0 0 0 0 1 0
........................................................................................................................................TTACTTTTTATGTATTTA................................................................................................ 18 1 18 0.06 1 0 1 0 0 0 0 0
............................................................................................TCCACGGCCTTATAATT............................................................................................................................................. 17 2 18 0.06 1 0 0 1 0 0 0 0
................................................................................................................................................................AAACTTAGAATCGAT........................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0
..................................................................................................................................................................ACTTAGAATCGAGACTGGA..................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
........................................................................................TGAGCCCATGCCCTTATA................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0
..............................................................GGACAATCCTAAGACC............................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1
......................................................................................................................................................................................................TCCGACCGTTCGAAG..................................... 15 1 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:11217235-11217484 + dsi_14490 GAAACTGCTTCGCATCTGTGCTAATTTGATAAGTTTTCTTTGAATGCTTA-AAGTGCTTA--------------TTTACTGTTAGAATTC--------TGGTGATTCGCAAACTTA--------------------------------------G------------GTACTGGAATA-----------------------------------TTAAAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTAATT-----------------------------TTTAAAGTAATTA--------AAT-GAAATATACATAAATGTTCCACTTGAATCTTAGCTAATA-CCT---------------TTA-A--TTTC-T----------------TTTTTTTTAGACTGGCAAGCTTCGAC---GGCGCCGTTG---------GAGGAGGAGGAGGAGCTGAACGCA
droSec2 scaffold_0:3695313-3695582 + GAAACTGCTTCGCATCAGTGCTAATTTGATAAGTTTTCTTTGAATGCTTA-AAGTACTTATCC-AAATCAAACATTTACTGTTAGAATTC--------TGGTGATTCGCAAACTTA--------------------------------------G------------GTACTTGAATA-----------------------------------TTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATC-AAAATATAATGCAATT-----------------------------ATTAAAGTAATTA--------AAT-GAAATATACATAAATGTTCCACTTGAATCTTAGCTAACA-ACT---------------TCA-A--TTT--C----------------TTTTTTTTAGACTGGCAAGCTTCGAC---GGCGCCGTTG---------GAGGAGGAGCAGGAGCTGAACGCA
dm3 chr3L:11486979-11487239 + GAAACGAATTTGCATCAGTGCTAATTTTATAAGTTTT-TTTGTTTGCTTTCTTTTGCTTATCC-GAATCAAACATTTACTGTACGAATTC--------TGGTGATTCGCAATCTTA--------------------------------------G------------GTACTTGAATA-----------------------------------TCAAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTATTT-----------------------------ATTAAAGTAATTA--------AAT-TA-ATATACATAAATGTTCCACTTGAATGTAAGCTAACA-CTT---------------TT--CAATTT-------------------CTTTTTTTAGACTGGCAAGCTTCTAC---GGCGCCGCTG---------GAGGAGGAGGAGGAGCTGACCGCA
droEre2 scaffold_4784:11497459-11497705 + GAAACTGTTTCGCATCAGTGCTAATTTGATAAGATTCCCTTGAATGCTTA-AAGGGCTTAGCC-AAATTTAACATTTAATGTTCGAATT-----------------CGCAAACTTT--------------------------------------G------------TTACTTCAAT---------------------------------------------------------------------------------------------------------TCA-----------------------------------------------------------------AC------------------------------------AAATT-AG-----AAAGTAATA-----------------------------ATTAAAATAATTA--------AAT-CA---------AAATGTTCCACTTGAATCTCAACTAACG-TTT---------------TTC-T--TTTC-T----------------TTTGTTTTAGACTGGCAAGCTGCAAC---GGCGCCACTG---------GAGGAGGAGGAGGAGCTGACCGCG
droYak3 3L:11528050-11528280 + AAAACTGTTTCGCATCTGTGCTAATTTGATTAGATTACCTAGAGCGCTTA-AAAGGCTTAGCC-AAATATAACACTTAT-------------------------------AACTT---------------------------------------------------------TGACTA--------------------------------------------------------------------------------------------------------TCA-----------------------------------------------------------------AA------------------------------------AAATC-AAAAAGTAATGTCTTT-----------------------------CTTAAAATAATTA--------AAT-CA---------AAATGTTCCACTTGGATCTTAACTAATG-TCT---------------TT--TT-GTC--T----------------TTTGTTTTAGACTGGCAAGCTGCAAC---GGCGCCGCTG---------GAGGAGGAGGAGGAGCTGAACGCG
droEug1 scf7180000409711:3371523-3371832 + AAAAGTTAGTTTCATTGGTGATAATCGTATAAAGTT--------------------------------AGAAAAATTATTGCTTGACTTG--------AAGCTTTCTGCATATTCAGGTATTTCGGCGTTAAAGACGAGAAAGCTTTCTTTTTG----------------G--AAATTTA-------------------------------------------------------------------------------------ACATCCATCTTCTA-------ATTTAAAAGGTTTTTGATAATCTAACATATATCATATACAAATCTTTTAATCTTAATTAATTTAAGTATTTA------------------TTAATT------------------------AATA-----------------------------A---TAAT------------------------------------------AATTTTATCTAACT-AAA------------CC-TCT-C--GTA--C----------------TTTCTTGCAGACTGGCAAGCTGCGAC---AGCGCCGCTG---------GAGGAGGAGGAGGACCTAACAGTG
droBia1 scf7180000302193:83711-83956 - CAAATTGGAACT--------------------------------------------------------CTTGCAATTATTGTCCAAAATC--------AGGTATTCTGAAAAT--T--------------------------------------G------------GTTCTACGTTA-----------------------------------TCGAAATGTAGTGTAATTAAAAGTTTT--T----AC----------AAAA--TTATATATCCCTTTGATTAATA--TTATTATATACCAATAAATATAATACCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------TAAAT--TTCTATATTT--CGTACTAAAA-CAT-------------TTTT------CACTT----------------GTTATTGCAGACTGGCAAGCTGCGAC---AGCACCGCTG---------GAGGAGGAGGAGGAGATGACCGCG
droTak1 scf7180000415349:127758-128031 - AGCACATCGATC-------------------------------------------------------------------TGTTCGAAACCAGGTATTGGTGCTTATCAGAATTTTAGGGGCTTC------------------CCAATTTTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAATATTTTTTAATATTGAAAAAATATTGAAAAAAATTTTTTGAGAACGTAGTATAAAATTAAGCTAGTAAACTACAAAAAATATATT-------TTT-TAACTTTTTATAAACATTGTACGTAAAAATC----AAGA-CTTAACTAACAAATATTTTT--TA---T--A----------------TTTTTTTTAGACTGGCAAGCTGCGAC------------G---------GAGGAGGAGGACGAGCTGACCGCG
droEle1 scf7180000490564:2437806-2438017 + AATGTTTAAAAT--------------ATTTAAGTATT-TTTGTTT------------------------------------AATGAAATC--------ATGTATTCCATAAAT-------------------------------------------------------------AAAA-----------------------------------TTTAGATGTAATGTAATCAGAATGATAATTAAATACTGAAATATACAAATACATATATATTTTTTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTTAACTAAAT-GCA---------------CGTAT--CT---GG---------------TCTTTTTCAGACTGGCAAGCTGCGAC---GGCACCGCTG---------GAGGAGGAGGAGGAGCTGACCGCG
droRho1 scf7180000766572:31489-31680 + GAAACGGATAA---------------------AATTTCACTTAATGTGTC-TAAGCCTTTTTTAGTTTCGGACATATACTTCTCGAATTC--------CGAT-TTACGGAAATTCA--------------------------------------G------------GTGC----------------------------------------------------------------------------------------------ATACTTATTTCTTATTTTCAAA--TAAAAATTTCTCAATAATTAAATAAGTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------CAAATGAGAGACTTGATTTTAAATAAATA-TTA---------------TT--TT--T---AG-------T-------CTTA--TTAAA-------------------------------------------------------------
droFic1 scf7180000454113:3208488-3208573 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTGATT-TTT---------------GTA-T--TCTCTG----------------GTTTTTGCAGACTGGCAATCTTCAAC---GGCGCCGCTG---------GAGGAGGAGGCGGAGCTGACCGCG
droKik1 scf7180000302391:1339981-1340257 - GAAATAGGGTGTCATTAGTGCTTGAGTTATG--ATTT-----------------------TTA-AAATCAAAAATTTACTC---------------------------------TA--------------------------------------G------------TTGCGGGAGTATAAAAACAATTAAAAATTCAAGTAAGAACAGTCATTAT--------------------------------------------------------------------------------------------------------------AG--------------------TCGTGGGCCTCTGTAAAAAATGTTTTCTTAAATTATAAAAAATTT-AAAAAATATTATTGTTACCAAG--------------------------------------------------------------------ACACTAAACTAATCCAATATCCC---------------TTTAC--CTT--T----------------TCATTTACAGACTGGCAAGCTGCAAC---GGCACCGCTGGAAGTGGAGGAGGAGGAGGAGGAGTTGAGCGTC
droAna3 scaffold_13337:5773830-5774033 + ACAACGGATGT-AATTTATGCA-------------------------------------------------------------------------------------------------------------------------------------GAACTGTCACAAGTATATGA-------------------------------------------------------------------------------------------------------------------------------------------------TATTCTAATTTTTGAGGCTTAATTATATTAGTCAGGTA------------------TAAATT---------------------------------------------------------ATAAAAAATATTA--------ATTTAATATATGTATTAATTATCTAATTAA-TCTT-----AAA-A-----------------TTT-A--TTT--C----------------TTTTTTTTAGACTGGCAAACTGCAGC---AGCTCCCCTG---------GAGGAGGAGGAGGAGGAAGAGCTG
droBip1 scf7180000396371:1099269-1099490 + GCCCCG------TATTTGGCATAATTAG----------------TGATTA-AAACGGATG---------TA------ATTAATACA---------------------------------------------------------------------AATCTGTTGCAAGTATATGAAGT-----------------------------------TCT--------------------------------------------------------------------------------------------------------------AG--------------------CAGTGAGGTA------------------TAA-------------------------------------------TTTTAAGCT-----------------CTTTTTCCTAAAATT--------TAATAAATTATCTAATTAA-TTTT-----A---------------------AT--TA---T--TTTCTTCAGTAGAGATTTCGACAGTAGACTGGCCAACTGCAGCGTCGGACCTCCTG---------GAGGAGGAGGAGGAGGAAGAGCTG
dp5 XR_group6:10176895-10176915 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCTG---------GAGGAGGAGGAGGAG---------
droPer2 scaffold_20:110249-110269 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCTG---------GAGGAGGAGGAGGAG---------
droWil2 scf2_1100000004511:1997456-1997480 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------GAGGACGAAGAGGAGCACGATCTA
droVir3 scaffold_13049:23289150-23289153 - CGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:17900256-17900261 - AACGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:2065247-2065298 + AATATAGTGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTG-----------------------------TA---------TA--------TAT-GCAATATATATAAATGCTCTATATGAA------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAAACTGCTTCGCATCTGTGCTAATTTGATAAGTTTTCTTTGAATGCTTA-AAGTGCTTA--------------TTTACTGTTAGAATTC--------TGGTGATTCGCAAACTTA--------------------------------------G------------GTACTGGAATA-----------------------------------TTAAAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTAATT-----------------------------TTTAAAGTAATTA--------AAT-GAAATATACATAAATGTTCCACTTGAATCTTAGCTAATA-CCT---------------TTA-A--TTTC-T----------------TTTTTTTTAGACTGGCAAGCTTCGAC---GGCGCCGTTG---------GAGGAGGAGGAGGAGCTGAACGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................TC--------TGGTGATTCGCAAACTTA--------------------------------------G------------GTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAC---GGCGCCGTTG---------GA......................1811.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCAAGCTTCGAC---GGC........................................1911.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGAGCTGAACG..1811.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGAGGAGGAGGAGCT.......1890.22200000000000001001
droSec2
GAAACTGCTTCGCATCAGTGCTAATTTGATAAGTTTTCTTTGAATGCTTA-AAGTACTTATCC-AAATCAAACATTTACTGTTAGAATTC--------TGGTGATTCGCAAACTTA--------------------------------------G------------GTACTTGAATA-----------------------------------TTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATC-AAAATATAATGCAATT-----------------------------ATTAAAGTAATTA--------AAT-GAAATATACATAAATGTTCCACTTGAATCTTAGCTAACA-ACT---------------TCA-A--TTT--C----------------TTTTTTTTAGACTGGCAAGCTTCGAC---GGCGCCGTTG---------GAGGAGGAGCAGGAGCTGAACGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTCGAC---GGCGCCGTTG---------GAGG....................2411.0010010
dm3
GAAACGAATTTGCATCAGTGCTAATTTTATAAGTTTT-TTTGTTTGCTTTCTTTTGCTTATCC-GAATCAAACATTTACTGTACGAATTC--------TGGTGATTCGCAATCTTA--------------------------------------G------------GTACTTGAATA-----------------------------------TCAAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTATTT-----------------------------ATTAAAGTAATTA--------AAT-TA-ATATACATAAATGTTCCACTTGAATGTAAGCTAACA-CTT---------------TT--CAATTT-------------------CTTTTTTTAGACTGGCAAGCTTCTAC---GGCGCCGCTG---------GAGGAGGAGGAGGAGCTGACCGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GGCGCCGCTG---------GAGGAGGAGGA.............2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GGCGCCGCTG---------GAGGAGGAGGAGG...........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG---------GAGGAGGAGGAGGA..........1853.60180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000001000000000000000000020000004000100001000000000003100001002000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GGCGCCGCTG---------GAGGAGGAG...............2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAATGTTCCACTTGAATGTAAGC.............................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GGCGCCGCTG---------GAGGAGGAGG..............2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAC---GGCGCCGCTG---------GAGGAGGAGG..............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAC---GGCGCCGCTG---------G.......................1912.0020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATCAAACATTTACTGTACGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GGCGCCGCTG---------GAGGA...................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG---------GAGGAGGAGGAGGAG.........1951.4070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG---------GAGGAGGAGGAGGAGC........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTG---------GAGGAGGAGGAGGAG.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAC---GGCGCCGCTG---------GAGA....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAC---GGCGCCGCTG---------GAGGAGGAGG..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCAAGCTTCTAC---GGCGCCGC...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAATGTTCCACTTGA.....................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CAATTT-------------------CTTTTTTTAGACTGGCAAGCT...................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGCTTCTAC---GGCGCCGCTG---------GAGGA...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTG---------GAGGAGGAGGAGGA..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................ATCC-GAATCAAACATTTACTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------GAGGAGGAGGAGGAGCT.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCGCTG---------GAGGAGGAGGAGGA..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCAAGCTTCTAC---GGCG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................CATTTACTGTACGAATTC--------TGGTGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CTTATCC-GAATCAAACATTTACTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................CATTTACTGTACGAATTC--------TGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTT-----------------------------ATTAAAGTAATTA--------C..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGGTGATTCGCAATCTTA--------------------------------------G------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ATTTACTGTACGAATTC--------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAC---GGCGCCGCTG---------G.......................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCTAC---GGCGCCGCTG---------GAGGA...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCTG---------GAGGAGGAGGA.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAC---GGCGCCGCTG---------GAGGAGGA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAGCTGACCGC.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTG---------GAGGAGGAGGAGGAGCT.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................TACGAATTC--------TGGTGATTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCTG---------GAGGAGGAGGAGG...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGAGGAGGAGGAGCTGACCGC.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TACTGTACGAATTC--------TGGTGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---------GAGGAGGAGGAGGAG.........1890.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTG---------GAGGAGGAGGAG............1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG---------GAGGAGGAGGAGG...........1760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG---------GAGGAGGAGGAGGAGCA.......2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGAGGAGGAGGAGCT.......1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---------GAGGAGGAGGAGGA..........17100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG---------GAGGAGGAGGAGGT..........18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
GAAACTGTTTCGCATCAGTGCTAATTTGATAAGATTCCCTTGAATGCTTA-AAGGGCTTAGCC-AAATTTAACATTTAATGTTCGAATT-----------------CGCAAACTTT--------------------------------------G------------TTACTTCAAT---------------------------------------------------------------------------------------------------------TCA-----------------------------------------------------------------AC------------------------------------AAATT-AG-----AAAGTAATA-----------------------------ATTAAAATAATTA--------AAT-CA---------AAATGTTCCACTTGAATCTCAACTAACG-TTT---------------TTC-T--TTTC-T----------------TTTGTTTTAGACTGGCAAGCTGCAAC---GGCGCCACTG---------GAGGAGGAGGAGGAGCTGACCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG-TTT---------------TTC-T--TTTC-T----------------TTTGTTTTAG..............................................................2611.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---GGCGCCACTG---------GAGGAGGAGGAGGAGC........2911.0010000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCACTG---------GAGGAGGAGGAGGA..........2211.0011000000
droYak3
AAAACTGTTTCGCATCTGTGCTAATTTGATTAGATTACCTAGAGCGCTTA-AAAGGCTTAGCC-AAATATAACACTTAT-------------------------------AACTT---------------------------------------------------------TGACTA--------------------------------------------------------------------------------------------------------TCA-----------------------------------------------------------------AA------------------------------------AAATC-AAAAAGTAATGTCTTT-----------------------------CTTAAAATAATTA--------AAT-CA---------AAATGTTCCACTTGGATCTTAACTAATG-TCT---------------TT--TT-GTC--T----------------TTTGTTTTAGACTGGCAAGCTGCAAC---GGCGCCGCTG---------GAGGAGGAGGAGGAGCTGAACGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAC---GGCGCCGCTG---------GAGG....................2311.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---------GAGGAGGAGGAGGAGC........1920.50100010000000
droEug1
AAAAGTTAGTTTCATTGGTGATAATCGTATAAAGTT--------------------------------AGAAAAATTATTGCTTGACTTG--------AAGCTTTCTGCATATTCAGGTATTTCGGCGTTAAAGACGAGAAAGCTTTCTTTTTG----------------G--AAATTTA-------------------------------------------------------------------------------------ACATCCATCTTCTA-------ATTTAAAAGGTTTTTGATAATCTAACATATATCATATACAAATCTTTTAATCTTAATTAATTTAAGTATTTA------------------TTAATT------------------------AATA-----------------------------A---TAAT------------------------------------------AATTTTATCTAACT-AAA------------CC-TCT-C--GTA--C----------------TTTCTTGCAGACTGGCAAGCTGCGAC---AGCGCCGCTG---------GAGGAGGAGGAGGACCTAACAGTGSizeHit CountTotal NormTotal
No Reads
droBia1
CAAATTGGAACT--------------------------------------------------------CTTGCAATTATTGTCCAAAATC--------AGGTATTCTGAAAAT--T--------------------------------------G------------GTTCTACGTTA-----------------------------------TCGAAATGTAGTGTAATTAAAAGTTTT--T----AC----------AAAA--TTATATATCCCTTTGATTAATA--TTATTATATACCAATAAATATAATACCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------TAAAT--TTCTATATTT--CGTACTAAAA-CAT-------------TTTT------CACTT----------------GTTATTGCAGACTGGCAAGCTGCGAC---AGCACCGCTG---------GAGGAGGAGGAGGAGATGACCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
AGCACATCGATC-------------------------------------------------------------------TGTTCGAAACCAGGTATTGGTGCTTATCAGAATTTTAGGGGCTTC------------------CCAATTTTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAATATTTTTTAATATTGAAAAAATATTGAAAAAAATTTTTTGAGAACGTAGTATAAAATTAAGCTAGTAAACTACAAAAAATATATT-------TTT-TAACTTTTTATAAACATTGTACGTAAAAATC----AAGA-CTTAACTAACAAATATTTTT--TA---T--A----------------TTTTTTTTAGACTGGCAAGCTGCGAC------------G---------GAGGAGGAGGACGAGCTGACCGCGSizeHit CountTotal NormTotal
No Reads
droEle1
AATGTTTAAAAT--------------ATTTAAGTATT-TTTGTTT------------------------------------AATGAAATC--------ATGTATTCCATAAAT-------------------------------------------------------------AAAA-----------------------------------TTTAGATGTAATGTAATCAGAATGATAATTAAATACTGAAATATACAAATACATATATATTTTTTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTTAACTAAAT-GCA---------------CGTAT--CT---GG---------------TCTTTTTCAGACTGGCAAGCTGCGAC---GGCACCGCTG---------GAGGAGGAGGAGGAGCTGACCGCGSizeHit CountTotal NormTotal
No Reads
droRho1
GAAACGGATAA---------------------AATTTCACTTAATGTGTC-TAAGCCTTTTTTAGTTTCGGACATATACTTCTCGAATTC--------CGAT-TTACGGAAATTCA--------------------------------------G------------GTGC----------------------------------------------------------------------------------------------ATACTTATTTCTTATTTTCAAA--TAAAAATTTCTCAATAATTAAATAAGTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------CAAATGAGAGACTTGATTTTAAATAAATA-TTA---------------TT--TT--T---AG-------T-------CTTA--TTAAA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTGATT-TTT---------------GTA-T--TCTCTG----------------GTTTTTGCAGACTGGCAATCTTCAAC---GGCGCCGCTG---------GAGGAGGAGGCGGAGCTGACCGCGSizeHit CountTotal NormTotal
No Reads
droKik1
GAAATAGGGTGTCATTAGTGCTTGAGTTATG--ATTT-----------------------TTA-AAATCAAAAATTTACTC---------------------------------TA--------------------------------------G------------TTGCGGGAGTATAAAAACAATTAAAAATTCAAGTAAGAACAGTCATTAT--------------------------------------------------------------------------------------------------------------AG--------------------TCGTGGGCCTCTGTAAAAAATGTTTTCTTAAATTATAAAAAATTT-AAAAAATATTATTGTTACCAAG--------------------------------------------------------------------ACACTAAACTAATCCAATATCCC---------------TTTAC--CTT--T----------------TCATTTACAGACTGGCAAGCTGCAAC---GGCACCGCTGGAAGTGGAGGAGGAGGAGGAGGAGTTGAGCGTCSizeHit CountTotal NormTotal
No Reads
droAna3
ACAACGGATGT-AATTTATGCA-------------------------------------------------------------------------------------------------------------------------------------GAACTGTCACAAGTATATGA-------------------------------------------------------------------------------------------------------------------------------------------------TATTCTAATTTTTGAGGCTTAATTATATTAGTCAGGTA------------------TAAATT---------------------------------------------------------ATAAAAAATATTA--------ATTTAATATATGTATTAATTATCTAATTAA-TCTT-----AAA-A-----------------TTT-A--TTT--C----------------TTTTTTTTAGACTGGCAAACTGCAGC---AGCTCCCCTG---------GAGGAGGAGGAGGAGGAAGAGCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAGC---AGCTCCCCTG---------GAGGAGG.................2612.002000002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCTCCCCTG---------GAGGAGGAGG..............2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---------GAGGAGGAGGAGGAGGAAGAGC..2511.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---------GAGGAGGAGGAGGAGGAAGA....2320.501000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAAGAG...18200.306410010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGAGGAGGAGGAGGAAGA....21100.202200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTG---------GAGGAGGAGGAGGA..........1850.201000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGAGGAGGAGGAGGAA......19200.204400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAGGAAGAG...21130.152200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGAGGAGGAAGAG...20150.132200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---------GAGGAGGAGGAGGAGGA.......20120.081000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGAGGAGGAGGAGGAAG.....20160.061100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------GAGGAGGAGGAGGAGGA.......19200.051100000
droBip1
GCCCCG------TATTTGGCATAATTAG----------------TGATTA-AAACGGATG---------TA------ATTAATACA---------------------------------------------------------------------AATCTGTTGCAAGTATATGAAGT-----------------------------------TCT--------------------------------------------------------------------------------------------------------------AG--------------------CAGTGAGGTA------------------TAA-------------------------------------------TTTTAAGCT-----------------CTTTTTCCTAAAATT--------TAATAAATTATCTAATTAA-TTTT-----A---------------------AT--TA---T--TTTCTTCAGTAGAGATTTCGACAGTAGACTGGCCAACTGCAGCGTCGGACCTCCTG---------GAGGAGGAGGAGGAGGAAGAGCTGSizeHit CountTotal NormTotal
No Reads
dp5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCTG---------GAGGAGGAGGAGGAG---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTG---------GAGGAGGAGGAGGA..........2011.0010100000000
droPer2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCTG---------GAGGAGGAGGAGGAG---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------GAGGACGAAGAGGAGCACGATCTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AACGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATATAGTGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTG-----------------------------TA---------TA--------TAT-GCAATATATATAAATGCTCTATATGAA------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 06:22 PM