ID:

dsi_14472

 Coordinate:

3r:21090741-21090890 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.9 -13.7 -13.3 -13.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTATTTTTTGGCTGGCAAGCGATTCTTCAATGTTTTCGCGTTAATTCTTGCGTTTATTTTTACGTTGACGCTGGTTCTTTTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTATTCAACCAGGGTCGCCAAAAATCAGCCCACTTAATTTTCCCCCTATCCAATACAGTGTCTATACAAACCTTGTAAGATCCAAGTGATAAGAGTGTGAATAAAGCG
***********************************************************.......................................(((...((((..(((((((........))))..))).))))...)))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M024
male body		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........................................................TTTTACGTTGACGCTGGTTCTTTTGGC.................................................................................................................................................................... 27 0 1 3.00 3 0 3 0 0 0 0 0
.........................................................................................................................................................................................................................TAAGATCCAAGTGATAAGAGTGTGA........ 25 0 1 2.00 2 0 2 0 0 0 0 0
........................................................................................................................TCACGCTTCCTGCTTAGATAATCTA......................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0
..........TGGCTGGCAAGCGATTCTTCAATGT....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................TACGTTGACGCTGGTTCTTTTGGCCATT................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0
...........................................TAATTCTTGCGTTTATTTTTACGTTGA.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TACAAACCTTGTAAGATCCAAGTGA................... 25 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................TGACGCTGGTTCTTTTGGCC................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................AAACCTTGTAAGATCCAAGTGAT.................. 23 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................CTGATTAGATAATCTCTGGCGAAGATC.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................TTACGTTGACGCTGGTTCTTTTGGC.................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.......TTTTGGCTGGCAAGCGATTCTTCAATG........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GTCTATACAAACCTTGTAA.............................. 19 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................AATCTATTCAACCAGGGTCGCCAAAAA.................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................TCTTTTGGCCATTTCTCTGATTAGATAA................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................TGGCCATTTCTCTGATTAGATAATC............................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
......................................................TTTATTTTTACTTTGACGCTGGTTCT.......................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................AACCTTGTAAGATCCAAGTGATAAGAG............. 27 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................TGATTAGATAATCTCTGGCGAAGATC.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................TACAGGGTCTATACAAACCTTGTAAGA............................ 27 1 1 1.00 1 1 0 0 0 0 0 0
.........TTGGCTGGCAAGCGATTCTTTAATGTT...................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AAACCTTGTAAGATCCAAGTGATAAG............... 26 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TGTAAGATCCAAGTGATAAG............... 20 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................GTTGACGCTGGTTCTTTTGGCCAT................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................TGGCCATTTCTCTGATTAGATAAT................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGATCCAAGTGATAAGAG............. 18 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................TTCTCTGATTAGATAATCTCTGGCGAA...................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................TCTATTCAACCAGGGTCGCCAAAAA.................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................TTCTTTTGGCCATTTCTCTGATTAGA.................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................CCATTTCTCTGATTAGATAAT................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0
.......TTGTGGCGGGCAAGCGGTTCT.............................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TCCAAGTGATAAGAA............. 15 1 9 0.11 1 0 0 0 0 0 1 0
.....................................................................................................................................................AGCAGAGTCGCCAACAATC.................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1
............................ACAATCTTCTCGCGTTAAT........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1
......................................................................................................................................................TCACGGTCGCCAAAAAT................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AAAATAAAAAACCGACCGTTCGCTAAGAAGTTACAAAAGCGCAATTAAGAACGCAAATAAAAATGCAACTGCGACCAAGAAAACCGGTAAAGAGACTAATCTATTAGAGACCGCTTCTAGAGTGCGAAGGACGAATCTATTAGATAAGTTGGTCCCAGCGGTTTTTAGTCGGGTGAATTAAAAGGGGGATAGGTTATGTCACAGATATGTTTGGAACATTCTAGGTTCACTATTCTCACACTTATTTCGC
*********************************************************************************************************.......................................(((...((((..(((((((........))))..))).))))...)))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
............................................................................AAGATAGCTGGTAAAGAGACT......................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
..........................................................................................................................TCCGAAGGGCGAATCTA............................................................................................................... 17 2 8 0.38 3 2 1 0 0
.......................................................................................................................................................................................GGGGGATCGGTATTGTCAC................................................ 19 3 6 0.33 2 0 0 2 0
......................................................................................................................................................................................TGGGGGATCGGTTTTGTCAC................................................ 20 3 3 0.33 1 0 1 0 0
.......................................................................................................................................................................................GGGGGATCGGTTTTGTCACG............................................... 20 3 5 0.20 1 1 0 0 0
............................................................................................................................CGAAGGGCGAATCTA............................................................................................................... 15 1 7 0.14 1 1 0 0 0
..........................................................................................................................CGCGAAGGGCGAATCTA............................................................................................................... 17 2 12 0.08 1 1 0 0 0
.....................................................................................................................AAGACTGCGGAGGACGAAT.................................................................................................................. 19 3 17 0.06 1 0 0 0 1
........................................................................................................................................................................................GGGGATCGGATTTGTCAC................................................ 18 3 17 0.06 1 0 0 0 1
..........................................................................................................................TCCGAAGGGCGAATCT................................................................................................................ 16 2 18 0.06 1 1 0 0 0
.........................................................................................................................................................................................GGGATCGGTTTTGTCAC................................................ 17 2 19 0.05 1 1 0 0 0
.........................................................................................................................GCGCGAAGGGCGAATC................................................................................................................. 16 2 19 0.05 1 0 0 0 1
..................................................................................................................................................AGTTGGGCCCAGCCG......................................................................................... 15 2 20 0.05 1 0 0 1 0
................................................................................................................................................TAAGATGGGGCCAGCGGT........................................................................................ 18 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21090691-21090940 - dsi_14472 TTTTAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTATTCAACCAGGGTCGCC---AAAAATCAGCC---------------------------CA--------CTTAATTT-TCCCCC---------------TAT----------CCAATACAGTGTCTATACAA--------AC---CTTGTAAGATCCAAGTGA---------------------TAAGAGTGTG--A-AT--A--A-----------AGCG
droSec2 scaffold_13:373073-373322 - TTTTAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCGATTCAACCAGGGTCGCC---AAAAATCAGCC---------------------------CA--------CTTAATTT-TCCCCC---------------TAT----------CCAATACAGTGTCTATACAA--------AC---CTTGTAAGATCCAAGTGA---------------------TAAGAGTGTG--A-AT--A--A-----------AGCA
dm3 chr3R:21584958-21585207 - TTTTAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTTCCAATGTTTT-TGCGTTAATGCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTATTCAACCAGGGTCACC---AGAAATCACCC---------------------------CA--------CTTAATT--TTCCCC---------------TAT----------CGAATACAGTGTCTATACAA--------AC---CTTGTAAGATCGAAGTGA---------------------TAAAAGTGTG--A-AA--A--A-----------AGCA
droEre2 scaffold_4820:6462367-6462623 + TTTTCCT--TTT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGC--GGT-------TTTTTT---T-G-----T-TTGGCCATTTCTCTGATTAGATAATCGCTGGTGCAGATCTCACGCTTCCTGCTTAGATAATCTATTTGGCCAGGGTCACC---AGAAATCACCC---------------------------CA--------CTTAATTTACCCCCC---------------TTT----------CCAATACAGTGTAAATACCA--------AC---ATTGTAAGATCAAAGTGC---------------------TTAAAGTGTG--A-AA--A--A-----------AGCG
droYak3 3R:24891824-24892102 + TTTTACTTTTTT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-TTTTTTCGATTTTTTTTTCTGT-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTACTTAGCCAGGGTCACC---AAAAATCACCC---------------------------CA--------CCTAATTT-CCCCCC---------------TTT----------CCAATACAGTGTAAATACAAAAATACCAAC---ATTGTAAGATCAAAGTGA---------------------ATAAAGTGTG--ACAA--A--A-----------AGCG
droEug1 scf7180000409682:1041822-1042082 + TTTTAT----TTTCTTTATTTATTTATTTTTTGG---CTGGCT-AGCGAT--TTTT-CAATGTTTT-T------------GCGTTTATTTTTACGC---------------------------------------------TTGGCGCTTGTC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTGTAGCGAAGATCTCACGCTTCCTGCTTAGATAATCTGAT-AGTCAGGGTCACG-CCAAAAATCACCC---------------------------CAT--TGCTC---TA--T-TCCCTC---------------T-A----------CCAATACAGTGTAAAT------------AC---TTTGTAAGATCAAAG-AACCTAAA---------------AAAAAGTGTGTAA-AA--A--C-----------AAAA
droBia1 scf7180000302136:2437949-2438208 - TTTTCCTTATTT-----------------TTTGG---CTGGCACAGCGGT--TCTT-CAATGTTTT-TGCGTTGGTTCTTGCGTTTATTTTTACG----------------------------------------------CCGCCGCT-GGC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTAGCGAAGATCCCACGCTTCCTGCTTAGATAATCTAAC-AACCAGGGTCACC---GAAAATCACCC---------------------------CAT--CTCTC----ATG--CCCCCC---------------TTTC-----AA--CCAACACAGTGTGAAT------------AC---TTTGTAAGATCAAAG-GA-----A-----------------AAGGTGTG--A-AG--AC-----CAAAGTAAAAAG
droTak1 scf7180000415367:862726-862984 + TTTTTCT--TTT-----------------CTTGG---CTGGCGCGGCGAT--TTTT-CAATGTTTT-TGCGTTGATTCTTGCGTTTATTTTTACG----------------------------------------------TTGTCGCT-GGC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTAGCGAAGATCCCACGCTTCCTGCTTAGATAATCTAAT-AGTCAGGGTCACCGAAAAAAATCACCC---------------------------CAT--TTCTC---AC--C-ACCCCCT---AT---------TTT----------CCAATACAGCGTAAAT------------AC---TTTGTAAGATCAAAG-GA----AA---------------GAAAAGTGTG--A-GGACCCAA-----------AG-T
droEle1 scf7180000491261:1167347-1167607 + TTTTAT----AT-----------------TTTGG---TTGGCA-AGCGAT--CTTT-TAATGTTTT-TGCGTTGGTTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCC-AGC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCAAACTTCCTGCTTGGATTATCTAAT-GGCCATGGTCACC---CAAACTCATAC---------------------------CCCTTCTC-----------CCTCCG---------------TTT----------CCAATACAGTGTAAATACAA--------TACTTTTTGTGAGATCAAAG-GA-----T-----------------AAAGTGTG--A-AA--ACAAGAACAAAATAAAAAT
droRho1 scf7180000780007:473769-474010 - TTTTTT-------------------------TTG---CTGGCA-AGCGATATATTT-TGATGTTTT-TGCGTTGATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGC-------TC---------T-----TTTTGGCCATTTCTCTGATTAGATAATCTCTAGCGAAGATCTCACGCTTCCTGCTTAGATAATCTAAT-GCCCAGGGTCACC---CAAACTCACCC---------------------------CCT--TTCTC---------TCCCCG---------------TGT----------TCAATACAGTGTAAAA------------CC---TAAGTAAGATCAAAG-GA-----A-----------------AAAGTGTA--A-AA--ACAA-----------AAAG
droFic1 scf7180000454055:1494579-1494819 - TTTTCC-------------------------TGA---CTGGCA-AGCGAT--TTTT-CAATGCTTC-TGCGTTGATTCTTGTGTTTATTTTTACGA--------------------------------------------ATTGTCGCT-GGC-------GC---------T-----T-TCGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCGGGCTTCCTGCTTAGATAATCTAAT-GGCCAGGGTCACC---CAGAATCTCAC---------------------------CCCATCTC-----------TCCCCA---------------CCC----------ACAATATAGTGTATAT------------AC---TTTGTATGATCGAAG-AA-----A-----------------AAAGTGTG--A-AG--GCAA-----------GAAT
droKik1 scf7180000302475:2920294-2920490 + TTTTAT----TTTCC--------------GTTGC---TTGGCA-AGCGAT--TTTT-CAATGTTTT------------TTGCGTTTATTTT--------------------------------------------------------------------------------------T-TTGGCCATTTCTCTGATTAGATAATCTCGCCAGAAGCTCCCACGCTTCCTGCTTAGATAATCTAAT-GGCCAGGGTCACC---C-------------------------------------CT--------CCTCCT-------------TC---------TCT----------ACCCTTTAGTGTAAAA------------AC---CGTGTAAGATCAAAG-GA-----A-----------------TATATGC---A-A------------------TAAA
droAna3 scaffold_13340:11554265-11554496 + TTTTAT----TAT------------A---TTCTT---TTGGCA-AGCAAA--TTGT-CAATGCTTTCTGCGGAGAATCTGTCGTTTATTTTTACG----------------------------------------------T-----------------------------------T-CTGGCCATTTCTCTGATTAGATAATCTCTGGCGGAGATCTCACGCTTCCTGCTTAGATAATCCTAT-GTCCACGGTCGCC---AT-------GC---------------------------CCCCT-----CTCAAC-----CTCCTGTATCT--------CTT----------CCAAT-TAGTGTGAAA------------AC---TTTGTCAGATCAATG-AA-----A-----------------AAAGTGGT--A-GT--AC-A-----------AATA
droBip1 scf7180000396691:461654-461888 + TTTTAT----TA-----------------TTTGGATTTTGGCA-AGCGAT--TTGT-CAATGCTTTCTGCGGAGAACCTGGCGTTTATTTTTACG----------------------------------------------T-----------------------------------T-CTGGCCATTTCTCTGATTAGATAATCTCTGGCGGAGATCTCACGCTTCCTGCTTAGATAATCTTAT-GTCCACGGTCGCC---AT-------GC---------------------------CCCCT-----CTTAAC-----CCCCACTATCTCTTCGTATGCC----------CCCAAACAGTGTAATA------------AC---TTTGTCAGATCAATG-AA-----A-----------------AATGTGCT--A-A---------------------A
dp5 2:23515733-23515941 + ATGGAA----TT-----------------T-------TTGGCA-AACGTT--GTTTCGAATGTTTT-CACAGAGATTTTAGCGTTTATTTTTAAGG---------------------------------------------CGGGTGCT-GTG-------TG---------T-----T-GTGGCCGTTTCTGTGATTAGATAATATTTCCTGAAGATCCAAAGCTTCCTGCTTAGATAATCTAAT-TGCCAGGGTCAA--------GTCTTAC---------------------------CACCA----------TT--TCCCCC---------------TCTC---------CTA--ACAGTGC--------------------------------AAAG-AA-----A-----------------AAAGAGTG--C-A---------------------A
droPer2 scaffold_3:6287695-6287903 + ATGGGA----TT-----------------T-------TTGGCA-AACGTT--ATTTCGAATGTTTT-CACAGAGATTTTAGCGTTTATTTTTAAGG---------------------------------------------CGGGTGCT-GTG-------TC---------T-----T-GTGGCCGTTTCTGTGATTAGATAATATTTCCTGAAGATCCAAAGCTTCCTGCTTAGATAATCTAAT-TGCCAGGGTCAA--------GTCTTAC---------------------------CACCA----------TT--TCCCCC---------------TCTC---------CTA--ACAGTGC--------------------------------AAAG-AA-----A-----------------AAAGAGTG--C-A---------------------A
droWil2 scf2_1100000004943:14460231-14460464 + GCTGCTT--CTT-----------------T-------TTGGCA-AC--AG--TTTT-CAATGTTTT-TGTTAAAAATGTATA-----TT---ATG-TTATTTTTCCGATCTCTTTCTACCTCTCTCTCTCTCTC-------TTGCCGT------------CTTTTT--CTCTTTCTCT-CTATGCGTGTGTGTGATTAGATAATTT-TAGC--AGATCCATTACTTCCTGCTTAGATAATCTAAT-GGCCATGATTC------------------------------------------------------------T-TTCTTC---------------TAT-----------GTGTTTAGTG----------------------------------AAAAAC---------------------TAAAAGTGCA--A-AA--A--A-----------AATA
droVir3 scaffold_12855:7016727-7017029 - TGTGTGT--GTG--TGTGTCTGCATAT--TTATT---TTGGCA-AC--AG--TTTT-CAATGTTG--CGCGATTTTCCTCTTTTTTTTTGTTGTAT--------------------------------TGACTGTTGCCAATCAGC---------------G---------C-----C-GACGTCGTCTGACTGGTTAGATAATGCCAGCAGAACCGACGTCGCTTCCTGCTGTCGTT------------------------TATAAACGCCTGACTTTCTGTTCCCATAGGCTCTTTAGCATAT----------TT--TGGGGC---------------ACCCCTAGAAATTCAATCAAAGTGCAAACAATT--ACACAAAC---TAAAGCAAATCAATT-AA-----GAAATTGAGTATTGAGAAACTGAGTG--A-CT--G--A-----------AATA
droMoj3 scaffold_6540:25604233-25604234 + CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTATTCAACCAGGGTCGCC---AAAAATCAGCC---------------------------CA--------CTTAATTT-TCCCCC---------------TAT----------CCAATACAGTGTCTATACAA--------AC---CTTGTAAGATCCAAGTGA---------------------TAAGAGTGTG--A-AT--A--A-----------AGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................TTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGC......................................................................................................................................................................................................................................................................................2713.00300000003000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCCAAGTGA---------------------TAAGAGTGTG--A-.......................2512.00200000002000000000
..........................................................................................................................................................................................................................TCACGCTTCCTGCTTAGATAATCTA...........................................................................................................................................................................................................................2512.00200000001010000000
...............................TGG---CTGGCA-AGCGAT--TCTT-CAATGT...............................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
...........................................................................................TACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATT..................................................................................................................................................................................................................................................................................2811.00100000000010000000
........................................................................TAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGA.............................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................TACAA--------AC---CTTGTAAGATCCAAGTGA---------------------.....................................2511.00100000000010000000
..............................................................................................................................................TGACGCT-GGT-------TC---------T-----T-TTGGCC.....................................................................................................................................................................................................................................................................................2011.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................AA--------AC---CTTGTAAGATCCAAGTGA---------------------T....................................2311.00100010000000000000
...............................................................................................................................................................................................CTGATTAGATAATCTCTGGCGAAGATC....................................................................................................................................................................................................................................................2711.00100000000010000000
..........................................................................................TTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGC......................................................................................................................................................................................................................................................................................2511.00100000000010000000
...........T-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATG................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................GTCTATACAA--------AC---CTTGTAA.....................................................................1911.00100010000000000000
.............................................................................................................................................................................................................................................AATCTATTCAACCAGGGTCGCC---AAAAA...................................................................................................................................................................................................2711.00100000001000000000
................................................................................................................................................................TC---------T-----T-TTGGCCATTTCTCTGATTAGATAA...................................................................................................................................................................................................................................................................2811.00100000001000000000
....................................................................................................................................................................................TGGCCATTTCTCTGATTAGATAATC.................................................................................................................................................................................................................................................................2511.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................A--------AC---CTTGTAAGATCCAAGTGA---------------------TAAGAG...............................2711.00100010000000000000
................................................................................................................................................................................................TGATTAGATAATCTCTGGCGAAGATC....................................................................................................................................................................................................................................................2611.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................AA--------AC---CTTGTAAGATCCAAGTGA---------------------TAAG.................................2611.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGATCCAAGTGA---------------------TAAG.................................2011.00100010000000000000
..............................................................................................G----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCAT...................................................................................................................................................................................................................................................................................2411.00100010000000000000
....................................................................................................................................................................................TGGCCATTTCTCTGATTAGATAAT..................................................................................................................................................................................................................................................................2411.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGATCCAAGTGA---------------------TAAGAG...............................1811.00101000000000000000
...........................................................................................................................................................................................TTCTCTGATTAGATAATCTCTGGCGAA........................................................................................................................................................................................................................................................2711.00100000000010000000
...............................................................................................................................................................................................................................................TCTATTCAACCAGGGTCGCC---AAAAA...................................................................................................................................................................................................2511.00100000000010000000
........................................................................................................................................................T-------TC---------T-----T-TTGGCCATTTCTCTGATTAGA......................................................................................................................................................................................................................................................................2611.00100000000010000000
.......................................................................................................................................................................................CCATTTCTCTGATTAGATAAT..................................................................................................................................................................................................................................................................2111.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTGA---------------------TAAGAA...............................1590.11100000010000000000
droSec2
TTTTAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCGATTCAACCAGGGTCGCC---AAAAATCAGCC---------------------------CA--------CTTAATTT-TCCCCC---------------TAT----------CCAATACAGTGTCTATACAA--------AC---CTTGTAAGATCCAAGTGA---------------------TAAGAGTGTG--A-AT--A--A-----------AGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................TAATCGATTCAACCAGGGT...............................................................................................................................................................................................................1911.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------TAAGAGTGTG--A-AT--A--A-----------AGC.2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGATCCAAGTGA---------------------TAAGAGTGTG--A-AT--...................2611.0010100
dm3
TTTTAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTTCCAATGTTTT-TGCGTTAATGCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTATTCAACCAGGGTCACC---AGAAATCACCC---------------------------CA--------CTTAATT--TTCCCC---------------TAT----------CGAATACAGTGTCTATACAA--------AC---CTTGTAAGATCGAAGTGA---------------------TAAAAGTGTG--A-AA--A--A-----------AGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................ACGCTTCCTGCTTAGATAATC.............................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................C---CTTGTAAGATCGAAGTGA---------------------TAAAAG...............................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................A--------AC---CTTGTAAGATCGAAGTGA---------------------TA...................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAGATCGAAGTGA---------------------T....................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CGAATACAGTGTCTATACAA--------AC---CTT.........................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GATCTCACGCTTCCTGCTTA....................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AA--------AC---CTTGTAAGATCGAAGTGA---------------------T....................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CACCC---------------------------CA--------CTTAATT--TTCCCC---------------TAT----------.............................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATACAA--------AC---CTTGTAAGATCGAAGTGA---------------------T....................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATT--TTCCCC---------------TAT----------CGAATACAGTGTCTA..............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AC---CTTGTAAGATCGAAGTGA---------------------T....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...TAT----TT-----------------TTTGG---CTGGCA-AGCGAT--TCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................A--------AC---CTTGTAAGATCGAAGTGA---------------------T....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTGA---------------------TAAAAGTGTG--A-AA--A--A-----------....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................TGG---CTGGCA-AGCGAT--TCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TCTCTGATTAGATAATCTCTGGCGAA........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGA---------------------TAAAAGTGTG--A-AA--A--................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................T-TTGGCCATTTCTCTGAT..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACAA--------AC---CTTGTAAGATCGAAGTGA---------------------TA...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TACAGTGTCTATACAA--------AC---CTTGTAA.....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AATGTTTT-TGCGTTAATG.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CCCC---------------TAT----------CGAATACAGTGTA................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCGAAGTGA---------------------TAAAAG...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACGCTTCCTGCTTAGATAATG.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ATCTATTCAACCAGGGTCACC---A.......................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AATGCTTGCGTTTATTTTTACG----------------------------------------------.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TATACAA--------AC---CTTGTAAGATCGAAGT............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................ATTCAACCAGGGTCACC---AGA.....................................................................................................................................................................................................2011.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TATTTTTACG----------------------------------------------TTGACGCT-GGT-------TC---------...................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................TTGG---CTGGCA-AGCGAT--C.........................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTCCT--TTT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGC--GGT-------TTTTTT---T-G-----T-TTGGCCATTTCTCTGATTAGATAATCGCTGGTGCAGATCTCACGCTTCCTGCTTAGATAATCTATTTGGCCAGGGTCACC---AGAAATCACCC---------------------------CA--------CTTAATTTACCCCCC---------------TTT----------CCAATACAGTGTAAATACCA--------AC---ATTGTAAGATCAAAGTGC---------------------TTAAAGTGTG--A-AA--A--A-----------AGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................GATCAAAGTGC---------------------TTAAAGTGTG--A-AA--A--A-----------....2611.0010000100
................................................................................................................................................................................................................................................CTATTTGGCCAGGGTCACC---AGA.....................................................................................................................................................................................................2211.0010000010
droYak3
TTTTACTTTTTT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CAATGTTTT-CGCGTTAATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-TTTTTTCGATTTTTTTTTCTGT-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCACGCTTCCTGCTTAGATAATCTACTTAGCCAGGGTCACC---AAAAATCACCC---------------------------CA--------CCTAATTT-CCCCCC---------------TTT----------CCAATACAGTGTAAATACAAAAATACCAAC---ATTGTAAGATCAAAGTGA---------------------ATAAAGTGTG--ACAA--A--A-----------AGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGA---------------------ATAAAGTGTG--ACAA--A--A-----------AGC.2714.00400000040000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTAAGATCAAAGTGA---------------------ATAAAGTGT............................2413.00301000020000
....................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGATCAAAGTGA---------------------ATAAAGTGT............................2512.00200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGA---------------------ATAAAGTGTG--A........................1811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AAGATCAAAGTGA---------------------ATAAAGTGT............................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGTGA---------------------ATAAAGTGTG--.........................2011.00100000010000
.TTTACTTTTTT-----------------TTTGG---CTGGCA-AGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTAAGATCAAAGTGA---------------------ATAAAGTGTG--.........................2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTAAGATCAAAGTGA---------------------ATAAAGTGTG--A........................2611.00100000010000
.......TTTTT-----------------TTTGG---CTGGCA-AGCGAT--TCTT-CA...................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
....................................................................................................................................................................................................TAGATAATCTCTGGCGAAGATCT...................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................ATACCAAC---ATTGTAAGATCAAAGTGA---------------------.....................................2611.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGTGA---------------------ATAAAGTGTG--ACAA--A--................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................AAAAATACCAAC---ATTGTAAGATC.................................................................2311.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGA---------------------ATAAAGTGTG--ACAA--A--A-----------AGC.2611.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGATCAAAGTGA---------------------ATAA.................................2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATCAAAGTGA---------------------ATAAAGTGT............................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATCAAAGTGA---------------------ATAAAGTGTG--AC.......................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................AAATACCAAC---ATTGTAAGATCAAAGT............................................................2611.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGTGA---------------------ATAAAGTGTG--ACAA--A--A-----------....2211.00100000010000
droEug1
TTTTAT----TTTCTTTATTTATTTATTTTTTGG---CTGGCT-AGCGAT--TTTT-CAATGTTTT-T------------GCGTTTATTTTTACGC---------------------------------------------TTGGCGCTTGTC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTGTAGCGAAGATCTCACGCTTCCTGCTTAGATAATCTGAT-AGTCAGGGTCACG-CCAAAAATCACCC---------------------------CAT--TGCTC---TA--T-TCCCTC---------------T-A----------CCAATACAGTGTAAAT------------AC---TTTGTAAGATCAAAG-AACCTAAA---------------AAAAAGTGTGTAA-AA--A--C-----------AAAASizeHit CountTotal NormTotal
No Reads
droBia1
TTTTCCTTATTT-----------------TTTGG---CTGGCACAGCGGT--TCTT-CAATGTTTT-TGCGTTGGTTCTTGCGTTTATTTTTACG----------------------------------------------CCGCCGCT-GGC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTAGCGAAGATCCCACGCTTCCTGCTTAGATAATCTAAC-AACCAGGGTCACC---GAAAATCACCC---------------------------CAT--CTCTC----ATG--CCCCCC---------------TTTC-----AA--CCAACACAGTGTGAAT------------AC---TTTGTAAGATCAAAG-GA-----A-----------------AAGGTGTG--A-AG--AC-----CAAAGTAAAAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTTCT--TTT-----------------CTTGG---CTGGCGCGGCGAT--TTTT-CAATGTTTT-TGCGTTGATTCTTGCGTTTATTTTTACG----------------------------------------------TTGTCGCT-GGC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTAGCGAAGATCCCACGCTTCCTGCTTAGATAATCTAAT-AGTCAGGGTCACCGAAAAAAATCACCC---------------------------CAT--TTCTC---AC--C-ACCCCCT---AT---------TTT----------CCAATACAGCGTAAAT------------AC---TTTGTAAGATCAAAG-GA----AA---------------GAAAAGTGTG--A-GGACCCAA-----------AG-TSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTAT----AT-----------------TTTGG---TTGGCA-AGCGAT--CTTT-TAATGTTTT-TGCGTTGGTTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCC-AGC-------TC---------T-----T-TTGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCAAACTTCCTGCTTGGATTATCTAAT-GGCCATGGTCACC---CAAACTCATAC---------------------------CCCTTCTC-----------CCTCCG---------------TTT----------CCAATACAGTGTAAATACAA--------TACTTTTTGTGAGATCAAAG-GA-----T-----------------AAAGTGTG--A-AA--ACAAGAACAAAATAAAAATSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTTT-------------------------TTG---CTGGCA-AGCGATATATTT-TGATGTTTT-TGCGTTGATTCTTGCGTTTATTTTTACG----------------------------------------------TTGACGCT-GGC-------TC---------T-----TTTTGGCCATTTCTCTGATTAGATAATCTCTAGCGAAGATCTCACGCTTCCTGCTTAGATAATCTAAT-GCCCAGGGTCACC---CAAACTCACCC---------------------------CCT--TTCTC---------TCCCCG---------------TGT----------TCAATACAGTGTAAAA------------CC---TAAGTAAGATCAAAG-GA-----A-----------------AAAGTGTA--A-AA--ACAA-----------AAAGSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTCC-------------------------TGA---CTGGCA-AGCGAT--TTTT-CAATGCTTC-TGCGTTGATTCTTGTGTTTATTTTTACGA--------------------------------------------ATTGTCGCT-GGC-------GC---------T-----T-TCGGCCATTTCTCTGATTAGATAATCTCTGGCGAAGATCTCGGGCTTCCTGCTTAGATAATCTAAT-GGCCAGGGTCACC---CAGAATCTCAC---------------------------CCCATCTC-----------TCCCCA---------------CCC----------ACAATATAGTGTATAT------------AC---TTTGTATGATCGAAG-AA-----A-----------------AAAGTGTG--A-AG--GCAA-----------GAATSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTAT----TTTCC--------------GTTGC---TTGGCA-AGCGAT--TTTT-CAATGTTTT------------TTGCGTTTATTTT--------------------------------------------------------------------------------------T-TTGGCCATTTCTCTGATTAGATAATCTCGCCAGAAGCTCCCACGCTTCCTGCTTAGATAATCTAAT-GGCCAGGGTCACC---C-------------------------------------CT--------CCTCCT-------------TC---------TCT----------ACCCTTTAGTGTAAAA------------AC---CGTGTAAGATCAAAG-GA-----A-----------------TATATGC---A-A------------------TAAASizeHit CountTotal NormTotal
No Reads
droAna3
TTTTAT----TAT------------A---TTCTT---TTGGCA-AGCAAA--TTGT-CAATGCTTTCTGCGGAGAATCTGTCGTTTATTTTTACG----------------------------------------------T-----------------------------------T-CTGGCCATTTCTCTGATTAGATAATCTCTGGCGGAGATCTCACGCTTCCTGCTTAGATAATCCTAT-GTCCACGGTCGCC---AT-------GC---------------------------CCCCT-----CTCAAC-----CTCCTGTATCT--------CTT----------CCAAT-TAGTGTGAAA------------AC---TTTGTCAGATCAATG-AA-----A-----------------AAAGTGGT--A-GT--AC-A-----------AATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................AATG-AA-----A-----------------AAAGTGGT--A-GT--AC-A-----------....2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................AATG-AA-----A-----------------AAAGTGGT--A-GT--...................1811.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCAGATCAATG-AA-----A-----------------AAAGTGGT--A-.......................2711.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAATG-AA-----A-----------------AAAGTGGT--A-GT--A..................2711.001000010
droBip1
TTTTAT----TA-----------------TTTGGATTTTGGCA-AGCGAT--TTGT-CAATGCTTTCTGCGGAGAACCTGGCGTTTATTTTTACG----------------------------------------------T-----------------------------------T-CTGGCCATTTCTCTGATTAGATAATCTCTGGCGGAGATCTCACGCTTCCTGCTTAGATAATCTTAT-GTCCACGGTCGCC---AT-------GC---------------------------CCCCT-----CTTAAC-----CCCCACTATCTCTTCGTATGCC----------CCCAAACAGTGTAATA------------AC---TTTGTCAGATCAATG-AA-----A-----------------AATGTGCT--A-A---------------------ASizeHit CountTotal NormTotal
No Reads
dp5
ATGGAA----TT-----------------T-------TTGGCA-AACGTT--GTTTCGAATGTTTT-CACAGAGATTTTAGCGTTTATTTTTAAGG---------------------------------------------CGGGTGCT-GTG-------TG---------T-----T-GTGGCCGTTTCTGTGATTAGATAATATTTCCTGAAGATCCAAAGCTTCCTGCTTAGATAATCTAAT-TGCCAGGGTCAA--------GTCTTAC---------------------------CACCA----------TT--TCCCCC---------------TCTC---------CTA--ACAGTGC--------------------------------AAAG-AA-----A-----------------AAAGAGTG--C-A---------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATGGGA----TT-----------------T-------TTGGCA-AACGTT--ATTTCGAATGTTTT-CACAGAGATTTTAGCGTTTATTTTTAAGG---------------------------------------------CGGGTGCT-GTG-------TC---------T-----T-GTGGCCGTTTCTGTGATTAGATAATATTTCCTGAAGATCCAAAGCTTCCTGCTTAGATAATCTAAT-TGCCAGGGTCAA--------GTCTTAC---------------------------CACCA----------TT--TCCCCC---------------TCTC---------CTA--ACAGTGC--------------------------------AAAG-AA-----A-----------------AAAGAGTG--C-A---------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................C---------T-----T-GTGGCCGTTTCTGTT............................................................................................................................................................................................................................................................................1820.501010000
droWil2
GCTGCTT--CTT-----------------T-------TTGGCA-AC--AG--TTTT-CAATGTTTT-TGTTAAAAATGTATA-----TT---ATG-TTATTTTTCCGATCTCTTTCTACCTCTCTCTCTCTCTC-------TTGCCGT------------CTTTTT--CTCTTTCTCT-CTATGCGTGTGTGTGATTAGATAATTT-TAGC--AGATCCATTACTTCCTGCTTAGATAATCTAAT-GGCCATGATTC------------------------------------------------------------T-TTCTTC---------------TAT-----------GTGTTTAGTG----------------------------------AAAAAC---------------------TAAAAGTGCA--A-AA--A--A-----------AATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................CTATGCGTGTGTGTGATTAGA......................................................................................................................................................................................................................................................................2111.00100100
..........................................................................................................................................................................CTTTCTCT-CTATGCGTGTGTGTGA...........................................................................................................................................................................................................................................................................2411.00100100
droVir3
TGTGTGT--GTG--TGTGTCTGCATAT--TTATT---TTGGCA-AC--AG--TTTT-CAATGTTG--CGCGATTTTCCTCTTTTTTTTTGTTGTAT--------------------------------TGACTGTTGCCAATCAGC---------------G---------C-----C-GACGTCGTCTGACTGGTTAGATAATGCCAGCAGAACCGACGTCGCTTCCTGCTGTCGTT------------------------TATAAACGCCTGACTTTCTGTTCCCATAGGCTCTTTAGCATAT----------TT--TGGGGC---------------ACCCCTAGAAATTCAATCAAAGTGCAAACAATT--ACACAAAC---TAAAGCAAATCAATT-AA-----GAAATTGAGTATTGAGAAACTGAGTG--A-CT--G--A-----------AATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAACTGAGTG--A-CT--...................1911.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATTGAGAAACTGAGT............................1911.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CAAAGTGCAAACAATT--ACACAAA................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGAGAAACTGAGTG--A-CT--G--A-----------AA..2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................T----------TT--TGGGGC---------------ACCCCTAGAAA...............................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGCATAT----------TT--TGGGGC---------------ACCCCTAGA.................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GAACCGACGTCGCTTCCTGCT......................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TAT----------TT--TGGGGC---------------ACCCCTAGAAA...............................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 03:59 PM