dsi_14448

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCAATCCACCCCCACCACCAGAGTGGAGCAATCTTTGGGGAATCCAACAATTATTTAACTCTACTCTCCATATTCTATATTTTATCTTGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA ************************************************.....((((....))))..........(((((((((.(((..(((.((...))..)))..)))...))))))))).......(((((........)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	M025 embryo	SRR618934 dsim w501 ovaries	M023 head	M024 male body	M053 female body	SRR553488 RT_0-2 hours eggs
.......................TCCGTGGAAGCGGTGCTGCTAGA..........................................................................................................................................................	23	0	1	2.00	2	2	0	0	0	0	0	0
.......................TCCGTGGAAGCGGTGCTGCTAGAGAG.......................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................TTGTAGAACTCCCTGCTGCAAGAGGCC.............................	27	0	1	2.00	2	0	2	0	0	0	0	0
.................................................................................................................................................................................GAATGGGACCAATGTGAAC....	19	0	1	1.00	1	0	0	0	1	0	0	0
.....GCCGAGGATGCGAAGA...................................................................................................................................................................................	16	0	1	1.00	1	0	0	1	0	0	0	0
.....................TATCCGTGGAAGCGGTGCTGC..............................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................................CGAGGAATGGGACCAATGG........	19	1	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................AAGAGGCCTGCGAGGAATG..................	19	0	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................GCCTGCGAGTAATGGGAC..............	18	1	1	1.00	1	0	1	0	0	0	0	0
........................CCGTGGAAGCGGTGCTGCTAGAGA........................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................AGGCATGCGTGGACTGGGAC..............	20	3	6	0.17	1	0	0	0	1	0	0	0
...............................................................................................................................................CTTGTGAAACTCCGTGCTGC.....................................	20	3	10	0.10	1	0	0	0	0	1	0	0
..........................................................................................ACTTGGGGAATCCACCAATT..........................................................................................	20	3	10	0.10	1	0	0	1	0	0	0	0
............................................................................................................................................AATCTTGTGAAACTCCCT..........................................	18	3	20	0.05	1	0	0	0	0	0	1	0
...........................TGGGAGCGGTTCTGCCAGA..........................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
..........................................................................ACCAGAGTGGACGAACCT............................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0	0

TCCTCCGGCTCCTACGCTTCTATAGGCACCTTCGCCACGACGATCTCTCCCATTTCACCGTTAGGTGGGGGTGGTGGTCTCACCTCGTTAGAAACCCCTTAGGTTGTTAATAAATTGAGATGAGAGGTATAAGATATAAAATAGAACATCTTGAGGGACGACGTTCTCCGGACGCTCCTTACCCTGGTTACACTTGCGTT ************************************************.....((((....))))..........(((((((((.(((..(((.((...))..)))..)))...))))))))).......(((((........)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
......................................................................................................GTTGTTAATAAATTGAGA................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................AGGGACGACTTTCTCCGA.............................	18	2	3	0.67	2	0	0	2	0	0	0	0
.................................ACCACGACGATCTCTC.......................................................................................................................................................	16	1	3	0.33	1	1	0	0	0	0	0	0
...TCGGGCTCCTACGCTACT...................................................................................................................................................................................	18	2	6	0.33	2	0	0	0	1	1	0	0
.................................ACCACGACGATCTCT........................................................................................................................................................	15	1	14	0.29	4	4	0	0	0	0	0	0
.................................ACCACGACGATCTCTCT......................................................................................................................................................	17	2	18	0.22	4	4	0	0	0	0	0	0
.................................ACCACGACGCTCTCTCC......................................................................................................................................................	17	2	17	0.18	3	2	0	0	0	0	0	1
.................................ACCACGACGATCTCTCTAA....................................................................................................................................................	19	3	20	0.15	3	3	0	0	0	0	0	0
..........................................................................................................................................AAATAGTACAACTTGAGGGC..........................................	20	3	8	0.13	1	0	0	1	0	0	0	0
..........................................................................................................................................AAATAGGACATCTTGAGACA..........................................	20	3	9	0.11	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2l:4968372-4968571 +	dsi_14448	AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-ATCC---AC-------------------------------------------------------------------------CCCCAC-CACCAGAGT--GGAGCAATCTT--TGG-----GGAAT-------CCAACA-----------------------A---------------TTATTT-----AAC----TCT------ACT---------------CTCCA---TATTCTATATT--------TTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droSec2	scaffold_5:3241602-3241801 +		AAGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-ATCC---AC-------------------------------------------------------------------------CACCAC-CACCAGAGT--GGAGCAATCTT--TCG-----AGAAT-------CCAACA-----------------------A---------------ATTTTT-----AAC----TCT------ACT---------------CTCCA---TATTCTATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
dm3	chr2L:5155168-5155371 +		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-ATCCAACAC-------------------------------------------------------------------------CATCAC-TACCAGAGT--GGAGGAATTTT--TGG-----GGAAT-------CCATCA-----------------------A---------------TTATTC-----AAC----TCT------TTT-CCC-------------CCA---CATTCTATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droEre2	scaffold_4929:5236315-5236513 +		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGCCA-AAC----------------------------------------------------------------------------------CAC-CACCAGAGT--GGAGGAATCTCT-----TTT-GAAGT-------CCAACC-----------------------A---------------TTATTC--AACGTC----CTT------TTT-CCC-------------CCA---TATTCCATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAGTGGGACCAATGTGAACGCAA
droYak3	2L:10368900-10369101 -		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-TGC----------------------------------------------------------------------------------CAC-CACCAGAGT--GGAAGAATCTCTATGC-----GAAAT-------CCAACA-----------------------A---------------TTATTC-----AAC----TCTTTTTCTTTT---------------CTGCA---TATTCTATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droEug1	scf7180000409005:1045144-1045331 +		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGTT-GAT---------------------------------------------------C-T-AGGGGTT-----------------------------------------ATCCC-----TACTAAGTAC-------CTATCA-----------------------A---------------GTTAAT-----AAC----AAT------TTC-CCT-------------CGA---TCTTTTATCGT--------TTCT---------CT--TTTAGAACTCCCTACTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droBia1	scf7180000302261:598377-598555 +		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGTG-GCTCTA----------------------------------------------ACC-A-------------------------------------------------------------------------------------------CTGGGATCC-GCTAATATAACT-------------------TTC----TTT------TCT-CCC-------------CCA---TCTTCTATCCC--------CGAT---------CC--CCCAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGCGAACGCAA
droTak1	scf7180000415704:368385-368568 -		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGATTAGAC---------------------------------------------------C-T--------------------------------------------------------TTG-----GGACT-------CCATCAGTAAATAAT--------------A---------------TTAT-----------------------TTT-TCCC----CTTTTTCTTTATTTT---CT---TT--------GTACCT-------CT--TTTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droEle1	scf7180000491273:58364-58558 -		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGAG-GAT---------------------------------------------------C-C-G-------------------------------------GA--GGACTAACCCCT-----TTCCAAA--AAAAAA--------------------------------------ACAAACCATTTAAT-----AAC----TTT------ATT-CTA-------------CCC---TTTACTATCTT--------GTAA---------TC--CATAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droRho1	scf7180000779577:61314-61530 -		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGAT-GAT---------------------------------------------------CCCAAGGGGTT-AAGACCAC--------C-CAGC-CCCTTTGGT--GGTAGAACCCCT-----TCA-GAAAC-------CCAGCA-----------------------A---------------CTTAAT-----AAC----CCT------GTT-CTT-------------CCA---TTTTGTAACTT--------TTAT---------TC--TACAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGCGAACGCAA
droFic1	scf7180000453842:1084891-1085088 -		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTATTC---------------------------------------------------------C-AGGGGTTTA------------------------------T--GGTAGAAACCCT-----C----TAA-TAAATTTTATGCA-----------------------A---------------GTAAAT-----AAC----CTT------TCCCCTTGTATT--------------TCTTTTATTTT--------TTAT---------CC--CACAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA
droKik1	scf7180000302643:705787-705972 -		AGGAGGCCGAGGATGCGAAGATAACCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGATC-ACTCAA-----------------------------------------------------------------------------------A-----------------ACCA------------AA-TAAAAATTAAGAA-----------------------A---------------ATTAAT-----AATT---TCT------TCT-CCCCCAAT--------------TTTCTTATCTT--------TTTA-------CCTT--AATAGAACTCCCTGCTGCAAGAGGCCTGTGAAGAATGGGACCAATGTGAACGCAA
droAna3	scaffold_12916:10005639-10005829 -		AGGAAGCCGAGGATGCGAAGATTACCGTGGAAGCGGTGCTGCTGGAGAGGGTAAAGTTGTT-TGG---------------------------------------------------GTCAAGGGATT-G-------CCATTCCC----------------------------------TTTCGGAAAC-------CAAACA---------GGGGGATC-A------------------TAT-----TTGT--------------------------TTT--------------TCTTTTAATTT--------CCCA---------TC--CACAGAACTCTCTGCTGCAAGAGGCCTGCGAAGAGTGGGATCAATGTGAACGCAA
droBip1	scf7180000396580:1028106-1028280 +		AGGAAGCCGAGGATGCGAAGATTACCGTGGAAGCGGTGCTGCTGGAGAGGGTAAAGTGTTT-T---------------------------------------------------------------------------------------------GGGT--TGAG-----------------GGAAT-------CCAAAC------A--GGGGGATC-A------------------TAT-----CTGT----T-----------------------------------TTTT-GT-----TT--------GCACTTCTT--CATC--CACAGAACTCTCTGCTGCAAGAGGCCTGCGAAGAGTGGGATCAATGTGAACGCAA
dp5	4_group3:2742531-2742698 -		AGGAGGCCGAGGATGCGAAGATAACCGTGGAAGCGGTGCTGCTGGAGAGGGTAA-----------------------------------------------------------------------------------------------C-CCCTAGATT--G-AG-------------------AAT-------AC-----------------------------------CCAT----AT-----------------CTTTAGCTGTT---------------CAGCA---TAACTAATATT--------TCCT---------TTCGATTAGAACTCTCTGCTGCAAGAGGCCTGCGAGGAATGGGATCAATGCGAACGCAA
droPer2	scaffold_1:4227833-4228000 -		AGGAGGCCGAGGATGCGAAGATAACCGTGGAAGCTGTGCTGCTGGAGAGGGTAA-----------------------------------------------------------------------------------------------C-CCCTAGATT--G-AG-------------------AAT-------AC-----------------------------------ACAT----AT-----------------CTTTAGCTGTT---------------CAGCA---TAACTAATATT--------TCCT---------TTCGATTAGAACTCTCTGCTGCAAGAGGCCTGCGAGGAATGGGATCAATGCGAACGCAA
droWil2	scf2_1100000004585:1123450-1123680 -		AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTGGAGAGGGTAAACAAAAA-TTCC---ACTTTGTATTGCTTAATGTAGCTAATTTCGAATTTGGAGTTCTTAACC-A-------------------------AGCCACACATTGGAGTCTGGGGC------------------------------GAGA-----------------------T---------------TTTTTTAAGA----T-----------------------------------TTTT-CT-----TT--------CCATCTCTTTCTTTC--AATAGAATTCCCTGCTGCAAGAGGCCTGCGAAGAATGGGACCAATGTGAACGTAA
droVir3	scaffold_12963:6441241-6441430 -	dvi_10647	AGCAGGCCGAGGATGCGAAGATAGCCGTGGAAGCAGTGCTGCTGGAGAGGGTAAACCCGCC-GCCA-------------------------------------------------------------------------------------------------------ACCCG---------ACAAC-CCAAATTATGCA-----------------------T---------------CTAAAC-----ACGCTTTTCTT---------TTTT----TTTT--TTTTT---CATTTTTGTTT--------GTAC---------CA--CGCAGAACTCACTGCTGCAGGAGGCCTGCGAGGAGTGGGATCAATGCGAGCGCAA
droMoj3	scaffold_6500:25586757-25586934 -		AGCAGGCCGAGGATGCGAAGATAGCCGTGGAAGCAGTGCTGCTGGAGAGGGTAAAGCGGGC-GA-------------------------------------------------------------AA-G-------TTAATCCT----------------------------------TAGCTTGAAC-------C------------------------------------------TAT---TT-----GATT----------------TCTC--------------------GTTTGTCTTTTCTCTTGTCAA-------CCCC--AACAGAACTCGCTGCTGCAGGAGGCCTGTGAAGAGTGGGATCAATGTGAGCGCAA
droGri2	scaffold_15252:9670537-9670707 -		AGCAGGCCGAGGATGCGAAGATAGCCGTGGAAGCAGTGCTGCTGGAGAGAGTAAGCTCATC-ATCA-----------------------------------------------------------------------------------------------------------------------------------AACA-------AC-T--------TCAAATTTAATTC------------------CAA----TCC------ATT---------------CATCA---TCTTTGTCCGT--------CTCT---------TT--CATAGAACTCGCTGCTGCAGGAGGCCTGCGAGGAGTGGGATCAATGCGAGCGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-ATCC---AC-------------------------------------------------------------------------CCCCAC-CACCAGAGT--GGAGCAATCTT--TGG-----GGAAT-------CCAACA-----------------------A---------------TTATTT-----AAC----TCT------ACT---------------CTCCA---TATTCTATATT--------TTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................TCCGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.......................TCCGTGGAAGCGGTGCTGCTAGAGAG...............................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................T--TGTAGAACTCCCTGCTGCAAGAGGCC.............................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GAATGGGACCAATGTGAAC....	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCCGAGGATGCGAAGA...........................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................TATCCGTGGAAGCGGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CGAGGAATGGGACCAATGG........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATG..................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCGTGGAAGCGGTGCTGCTAGAGA................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

AAGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-ATCC---AC-------------------------------------------------------------------------CACCAC-CACCAGAGT--GGAGCAATCTT--TCG-----AGAAT-------CCAACA-----------------------A---------------ATTTTT-----AAC----TCT------ACT---------------CTCCA---TATTCTATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........GATGCGAAGATATCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAATGGGACC.............	26	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................TGCAAGAGGCCTGCGAGGAATG..................	22	1	1.00	1	0	0	1	0
......................ATCCGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATGGGA...............	22	1	1.00	1	0	0	0	1
........................CCGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................ATGGGACCAATGTGAACGC..	19	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................AGAGGCCTGCGAGGAATGGGACC.............	23	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTGCAAGAGGCCTGCGAGGAATGGG................	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGA.....................	18	1	1.00	1	0	0	1	0
............ATGCGAAGATATCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................GCGGTGCTGCTAGAGAGG..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.............TGCGAAGATATCCGTGGAAGCGGT...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
..............GCGAAGATATCCGTGGAAGCGGTGCTG.......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0

dm3

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-ATCCAACAC-------------------------------------------------------------------------CATCAC-TACCAGAGT--GGAGGAATTTT--TGG-----GGAAT-------CCATCA-----------------------A---------------TTATTC-----AAC----TCT------TTT-CCC-------------CCA---CATTCTATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................CCGTGGAAGCGGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCGTGGAAGCGGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCGGTGCTGCTAGAGAGG..............................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
........................CCGTGGAAGCGGTGCTGCTAG...................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATGGGACC.............	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CCTGCGAGGAATGGGACCAATGT........	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................CTGCGAGGAATGGGACCAAT..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGA.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCGAGGAATGGGACCAATGTGAACG...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GGAATGGGACCAATGTGAACG...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................ACTCCCTGCTGCAAGAGGC..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................................................TGCAAGAGGCCTGCGAGGAATGGGA...............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................GCGAGGAATGGGACCAATGTGAACGCA.	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATCCGTGGAAGCGGTGCTGCTAGAGAG...............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAGGATGCGAAGATATCCGTGGA.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAAT...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GAAGATATCCGTGGAAGCGGT...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGCCA-AAC----------------------------------------------------------------------------------CAC-CACCAGAGT--GGAGGAATCTCT-----TTT-GAAGT-------CCAACC-----------------------A---------------TTATTC--AACGTC----CTT------TTT-CCC-------------CCA---TATTCCATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAGTGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAGGCCTGCGAGG......................	20	1	2.00	2	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................CTGCAAGAGGCCTGCGAGGA.....................	20	1	2.00	2	0	0	0	1	0	1	0
........................................................................................................................................................................................................................................................................................................................................................TGCAAGAGGCCTGCGAGG......................	18	1	1.00	1	0	0	0	0	0	1	0
..GAGGCCGAGGATGCGAAGA...........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAGT...................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGA.....................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................AGGCCTGCGAGGAGTGGG................	18	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................AGTGGGACCAATGTGAAC....	18	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GAGTGGGACCAATGTGAAC....	19	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAGTGGGACC.............	24	1	1.00	1	0	0	0	0	1	0	0
...............CGAAGATATCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................AGTGGGACCAATGTGAACGC..	20	1	1.00	1	0	0	0	0	1	0	0
...................................GTGCTGCTAGAGAGGGTAAAGT.......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................GTGGAAGCGGTGCTGCTAGAGA................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........GAGGATGCGAAGATATCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAGGCCTGCGAGGA.....................	21	1	1.00	1	1	0	0	0	0	0	0
........................CCGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............GCGAAGATATCCGTGGAAGCG.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGGACCAATGTGAACGCA.	25	1	1.00	1	0	0	0	0	0	1	0
AGGAGGCCGAGGATGCGAA.............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.....................TATCCGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.............TGCGAAGATATCCGTGGAAGCGG............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCTGCAAGAGGCCTGCGAGGA.....................	22	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................TGCGAGGAGTGGGACCAATGTGAACGC..	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CCTGCTGCAAGAGGCCTGC..........................	19	1	1.00	1	0	0	0	0	0	1	0
.......CGAGGATGCGAAGATATCCGTGGAAG...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................GCGGTGCTGCTAGAGAGG..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................AGAGGCCTGCGAGGAGTGGGACCA............	24	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AGTGGGACCAATGTGAACGCA.	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAGTGGGA...............	24	1	1.00	1	0	0	0	0	0	1	0
...............................AGCGGTGCTGCTAGAGAGGAA............................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0	0	0

droYak3

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGCA-TGC----------------------------------------------------------------------------------CAC-CACCAGAGT--GGAAGAATCTCTATGC-----GAAAT-------CCAACA-----------------------A---------------TTATTC-----AAC----TCTTTTTCTTTT---------------CTGCA---TATTCTATATT--------GTAT---------CT--TGTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................TCCGTGGAAGCGGTGCTGCTAGAGAGG..............................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................TATCCGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GATATCCGTGGAAGCGGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................ATGGGACCAATGTGAACGC..	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCGAGGAATGGGACCAATGTGA......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTGGAAGCGGTGCTGCTAGAGAGG..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................CGTGGAAGCGGTGCTGCTAGA..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTGGAAGCGGTGCTGCTAGAGA................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GGCCTGCGAGGAATGGGA...............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................TATCCGTGGAAGCGGTGCTGCC.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
AGGAGGCCGAGGATGCGAAGAT..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CTGCGAGGAATGGGACCAATGTGAA.....	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAGGAATGGGACCAATGTGAACG...	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............TGCGAAGATATCCGTGGAAGCGGTGCT........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAATGG.................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GAGGCCGAGGATGCGAAGATATC.......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAGGCCTGCGAGGAATGGGAC..............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGCTGCAAGAGGCCTGCGAGGAATGG.................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........GATGCGAAGATATCCGTGGA.................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CTCCCTGCTGCAAGAGGCC.............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGTT-GAT---------------------------------------------------C-T-AGGGGTT-----------------------------------------ATCCC-----TACTAAGTAC-------CTATCA-----------------------A---------------GTTAAT-----AAC----AAT------TTC-CCT-------------CGA---TCTTTTATCGT--------TTCT---------CT--TTTAGAACTCCCTACTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGTG-GCTCTA----------------------------------------------ACC-A-------------------------------------------------------------------------------------------CTGGGATCC-GCTAATATAACT-------------------TTC----TTT------TCT-CCC-------------CCA---TCTTCTATCCC--------CGAT---------CC--CCCAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGCGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGATTAGAC---------------------------------------------------C-T--------------------------------------------------------TTG-----GGACT-------CCATCAGTAAATAAT--------------A---------------TTAT-----------------------TTT-TCCC----CTTTTTCTTTATTTT---CT---TT--------GTACCT-------CT--TTTAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGAG-GAT---------------------------------------------------C-C-G-------------------------------------GA--GGACTAACCCCT-----TTCCAAA--AAAAAA--------------------------------------ACAAACCATTTAAT-----AAC----TTT------ATT-CTA-------------CCC---TTTACTATCTT--------GTAA---------TC--CATAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGGAT-GAT---------------------------------------------------CCCAAGGGGTT-AAGACCAC--------C-CAGC-CCCTTTGGT--GGTAGAACCCCT-----TCA-GAAAC-------CCAGCA-----------------------A---------------CTTAAT-----AAC----CCT------GTT-CTT-------------CCA---TTTTGTAACTT--------TTAT---------TC--TACAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGCGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTATTC---------------------------------------------------------C-AGGGGTTTA------------------------------T--GGTAGAAACCCT-----C----TAA-TAAATTTTATGCA-----------------------A---------------GTAAAT-----AAC----CTT------TCCCCTTGTATT--------------TCTTTTATTTT--------TTAT---------CC--CACAGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGAGGCCGAGGATGCGAAGATAACCGTGGAAGCGGTGCTGCTAGAGAGGGTAAAGTGATC-ACTCAA-----------------------------------------------------------------------------------A-----------------ACCA------------AA-TAAAAATTAAGAA-----------------------A---------------ATTAAT-----AATT---TCT------TCT-CCCCCAAT--------------TTTCTTATCTT--------TTTA-------CCTT--AATAGAACTCCCTGCTGCAAGAGGCCTGTGAAGAATGGGACCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGGAAGCCGAGGATGCGAAGATTACCGTGGAAGCGGTGCTGCTGGAGAGGGTAAAGTTGTT-TGG---------------------------------------------------GTCAAGGGATT-G-------CCATTCCC----------------------------------TTTCGGAAAC-------CAAACA---------GGGGGATC-A------------------TAT-----TTGT--------------------------TTT--------------TCTTTTAATTT--------CCCA---------TC--CACAGAACTCTCTGCTGCAAGAGGCCTGCGAAGAGTGGGATCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAGT...................	20	1	2.00	2	0	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAGTGGGATC.............	26	1	2.00	2	0	0	0	0	0	2
...........GATGCGAAGATTACCGTGGAA................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............CGAAGATTACCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
......................TACCGTGGAAGCGGTGCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAAGAGTGGG................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAGTGGGAT..............	25	1	1.00	1	0	0	0	0	0	1
.........................CGTGGAAGCGGTGCTGCTGG...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..GAAGCCGAGGATGCGAAGATTACCGT....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................ACCGTGGAAGCGGTGCTGCTGGAG.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CTGCTGCAAGAGGCCTGCGAAGAGTGG.................	27	1	1.00	1	0	0	0	0	1	0
..........GGATGCGAAGATTACCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......CGAGGATGCGAAGATTACCGT....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................GGAAGCGGTGCTGCTGGAGAG...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........GATGCGAAGATTACCGTG...................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......CGAGGATGCGAAGATTACCGC....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CTGCTGCAAGAGGCCTGCGAAGAGT...................	25	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................TCCC----------------------------------TTTCGGAAAC-------CAAACA---------GGGT..........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................AAGAGTGGGATCAATGTGAACGC..	23	1	1.00	1	0	0	0	0	0	1
........GAGGATGCGAAGATTACCGTGGAAGCG.............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
....AGCCGAGGATGCGAAGATTACCGT....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................AGATTACCGTGGAAGCGGTGCTGCTG....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
................GAAGATTACCGTGGAAGCGG............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................CGTGGAAGCGGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
.................................CGGTGCTGCTGGAGAGGAAC...........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

AGGAAGCCGAGGATGCGAAGATTACCGTGGAAGCGGTGCTGCTGGAGAGGGTAAAGTGTTT-T---------------------------------------------------------------------------------------------GGGT--TGAG-----------------GGAAT-------CCAAAC------A--GGGGGATC-A------------------TAT-----CTGT----T-----------------------------------TTTT-GT-----TT--------GCACTTCTT--CATC--CACAGAACTCTCTGCTGCAAGAGGCCTGCGAAGAGTGGGATCAATGTGAACGCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGGAGGCCGAGGATGCGAAGATAACCGTGGAAGCGGTGCTGCTGGAGAGGGTAA-----------------------------------------------------------------------------------------------C-CCCTAGATT--G-AG-------------------AAT-------AC-----------------------------------CCAT----AT-----------------CTTTAGCTGTT---------------CAGCA---TAACTAATATT--------TCCT---------TTCGATTAGAACTCTCTGCTGCAAGAGGCCTGCGAGGAATGGGATCAATGCGAACGCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................GTGGAAGCGGTGCTGCTGG...................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CTGCTGCAAGAGGCCTGCGAGG......................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............GCGAAGATAACCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GAGGATGCGAAGATAACCGT....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TGGGATCAATGCGAACGCA.	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAGGAATGGGATCAATGCGA......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GATAACCGTGGAAGCGGTGCTG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAAT...................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTGCAAGAGGCCTGCGAGGAATGGGAT..............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GTGGAAGCGGTGCTGCTGGAGAGG..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GCGAAGATAACCGTGGAAGCG.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGA.....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CGTGGAAGCGGTGCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCCTGCGAGGAATGGGATCAATG.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................ATAACCGTGGAAGCGGTGCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATGGGA...............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGGCCTGCGAGGAATGGGAT..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...AGGCCGAGGATGCGAAGATAACCGTG...................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CGTGGAAGCGGTGCTGCTGGAG.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................AGCGGTGCTGCTGGAGAGGG.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................GATAACCGTGGAAGCGGTGCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGCGAGGAATGGGATCAATGCGAACG...	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CTGCTGCAAGAGGCCTGCGAGGAATG..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............ATGCGAAGATAACCGTGGAAGCGGG...........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATGG.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GGAATGGGATCAATGCGAAC....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CGTGGAAGCGGTGCTGCTGGAGAG...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CGAGGAATGGGATCAATGC........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAGGAATGGGAT..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CGAGGATGCGAAGATAACCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

AGGAGGCCGAGGATGCGAAGATAACCGTGGAAGCTGTGCTGCTGGAGAGGGTAA-----------------------------------------------------------------------------------------------C-CCCTAGATT--G-AG-------------------AAT-------AC-----------------------------------ACAT----AT-----------------CTTTAGCTGTT---------------CAGCA---TAACTAATATT--------TCCT---------TTCGATTAGAACTCTCTGCTGCAAGAGGCCTGCGAGGAATGGGATCAATGCGAACGCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................AGATAACCGTGGAAGCTGTGCT........................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
..........................GTGGAAGCTGTGCTGCTGGAGAGGAAC...........................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
.........................CGTGGAAGCTGTGCTGCTGGAGAGGAA............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
........................CCGTGGAAGCTGTGCTGCTGGAGA................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATGGGATC.............	24	1	1.00	1	0	0	0	0	0	1
.....GCCGAGGATGCGAAGATAACC......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.GGAGGCCGAGGATGCGAAGAT..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................CTGCGAGGAATGGGATCAA...........	19	1	1.00	1	0	0	0	0	0	1
..........................GTGGAAGCTGTGCTGCTGGAGAG...............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................AACCGTGGAAGCTGTGCTGCTGG...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.......................ACCGTGGAAGCTGTGCTGCTGGAG.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GGAATGGGATCAATGCGAACGC..	22	1	1.00	1	0	0	1	0	0	0
.....................TAACCGTGGAAGCTGTGCTGCTGGAGA................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCGAGGAATGGGATCAATGCGAA.....	23	1	1.00	1	0	0	0	0	0	1
...............CGAAGATAACCGTGGAAGCTGTG..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GAGGCCTGCGAGGAATGGGAT..............	21	1	1.00	1	0	0	0	0	0	1
...................GATAACCGTGGAAGCTGTG..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................CAAGAGGCCTGCGAGGAAT...................	19	1	1.00	1	0	0	0	0	0	1
........GAGGATGCGAAGATAACCGTGGAAG...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAGGAATGGGA...............	22	1	1.00	1	0	0	1	0	0	0
.....................TAACCGTGGAAGCTGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........GAGGATGCGAAGATAACCGT....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

AGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTGGAGAGGGTAAACAAAAA-TTCC---ACTTTGTATTGCTTAATGTAGCTAATTTCGAATTTGGAGTTCTTAACC-A-------------------------AGCCACACATTGGAGTCTGGGGC------------------------------GAGA-----------------------T---------------TTTTTTAAGA----T-----------------------------------TTTT-CT-----TT--------CCATCTCTTTCTTTC--AATAGAATTCCCTGCTGCAAGAGGCCTGCGAAGAATGGGACCAATGTGAACGTAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................CGTGGAAGCGGTGCTGCTGG...................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0
..............GCGAAGATATCCGTGGAAGCGGTGCT........................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	1	0
...............................................................................................................................................................................................................................................................................................................................................ATTCCCTGCTGCAAGAGGCCTGC..........................	23	1	2.00	2	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAATGGGACC.............	26	1	2.00	2	0	1	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAAGAGGCCTGCGAAGAATGGGACC.............	25	1	2.00	2	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAATG..................	21	1	1.00	1	0	0	1	0	0
.GGAGGCCGAGGATGCGAAGA...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAGAATGGGACCAATGTGAACGTAA	26	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTGCAAGAGGCCTGCGAAGAATGGGA...............	26	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................TGGGACCAATGTGAACGTAA	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................TGCTGCAAGAGGCCTGCGA........................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................AGAGGCCTGCGAAGAATGG.................	19	1	1.00	1	0	0	0	1	0
.........................CGTGGAAGCGGTGCTGCTGGAGAG...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...............................AGCGGTGCTGCTGGAGAGGA.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
AGGAGGCCGAGGATGCGAA.............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................TGCAAGAGGCCTGCGAAGAATGGGAC..............	26	1	1.00	1	0	0	0	1	0
.............TGCGAAGATATCCGTGGAAGCGGT...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AATGGGACCAATGTGAACGTAA	22	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................CTGCGAAGAATGGGACCAAT..........	20	1	1.00	1	0	0	0	1	0
...................GATATCCGTGGAAGCGGTGCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........................CCGTGGAAGCGGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................TCTGGGGC------------------------------GAGA-----------------------T---------------TTTTTT..........................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................CAAGAGGCCTGCGAAGAATG..................	20	1	1.00	1	0	0	0	1	0
..............GCGAAGATATCCGTGGAAGCGGTGC.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAGGCCTGCGAAGAATGGG................	26	1	1.00	1	0	1	0	0	0
..........................GTGGAAGCGGTGCTGCTGG...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...................GATATCCGTGGAAGCGGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
................GAAGATATCCGTGGAAGCGGT...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAATGGGA...............	24	1	1.00	1	0	0	1	0	0
......................ATCCGTGGAAGCGGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.............................GAAGCGGTGCTGCTGGAGAGGA.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...AGGCCGAGGATGCGAAGAT..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................ATCCGTGGAAGCGGTGCTGCTGGAG.................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................GAAGAATGGGACCAATGT........	18	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................GCGAAGAATGGGACCAATGTGAACGTAA	28	1	1.00	1	0	1	0	0	0
...................GATATCCGTGGAAGCGGTGCTG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAGAATGGGACCAATGTGA......	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AAGAGGCCTGCGAAGAATGGGACC.............	24	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AAGAATGGGACCAATGTGAACGTA.	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAAGAGGCCTGCGAAGAATGGGAC..............	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................CTGCGAAGAATGGGACCAATGTG.......	23	1	1.00	1	0	0	1	0	0
......................ATCCGTGGAAGCGGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAAGAGGCCTGCGAAGAATGGGAC..............	25	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CTGCTGCAAGAGGCCTGC..........................	18	1	1.00	1	0	0	0	1	0
...............................AGCGGTGCTGCTGGAGAG...............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

AGCAGGCCGAGGATGCGAAGATAGCCGTGGAAGCAGTGCTGCTGGAGAGGGTAAACCCGCC-GCCA-------------------------------------------------------------------------------------------------------ACCCG---------ACAAC-CCAAATTATGCA-----------------------T---------------CTAAAC-----ACGCTTTTCTT---------TTTT----TTTT--TTTTT---CATTTTTGTTT--------GTAC---------CA--CGCAGAACTCACTGCTGCAGGAGGCCTGCGAGGAGTGGGATCAATGCGAGCGCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................GCAGGAGGCCTGCGAGGAGTGGGATCA............	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................GCAGGAGGCCTGCGAGGAGTGGGAT..............	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................GAGTGGGATCAATGCGAGC....	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................TCACTGCTGCAGGAGGCCTGCGAGGAGT...................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTGCAGGAGGCCTGCGAGGAG....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACTCACTGCTGCAGGAGGCCTG...........................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AGGAGGCCTGCGAGGAGTGGGATCAA...........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TTTGTTT--------GTAC---------CA--CGCAGAACTCACTGCT.......................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACTGCTGCAGGAGGCCTGCGA........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCCGAGGATGCGAAGAT..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AGGAGGCCTGCGAGGAGTGGGAT..............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAGGATGCGAAGATAGCCGTGGAAGCA.............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AGTGGGATCAATGCGAGCGCA.	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGAGGATGCGAAGATAGCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATGCGAAGATAGCCGTGGAAG...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCTGCAGGAGGCCTGCGAGGAG....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAGGAGGCCTGCGAGGAGTGGGATC.............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GGAGTGGGATCAATGCGAGCG...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................CCTGCGAGGAGTGGGATCAATGCGAGCG...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...AGGCCGAGGATGCGAAGAT..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CTCACTGCTGCAGGAGGCCTGCGAG.......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................AGCCGTGGAAGCAGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....GCCGAGGATGCGAAGATAGCCGT....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGGATCAATGCGAGC....	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGAGGATGCGAAGATAGCCGTG...................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AGTGCTGCTGGAGAGGGTAAACCCGCC-G.................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GGAGGCCTGCGAGGAGTGGGA...............	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGCGAGGAGTGGGATCAATGCGAGC....	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGGAGTGGGATCAATGCGAGCGCA.	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCAGTGCTGCTGGAGAGGAAC...........................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

AGCAGGCCGAGGATGCGAAGATAGCCGTGGAAGCAGTGCTGCTGGAGAGGGTAAAGCGGGC-GA-------------------------------------------------------------AA-G-------TTAATCCT----------------------------------TAGCTTGAAC-------C------------------------------------------TAT---TT-----GATT----------------TCTC--------------------GTTTGTCTTTTCTCTTGTCAA-------CCCC--AACAGAACTCGCTGCTGCAGGAGGCCTGTGAAGAGTGGGATCAATGTGAGCGCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................AGCCGTGGAAGCAGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
.....................TAGCCGTGGAAGCAGTGCTGCTGGAGAG...............................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
...AGGCCGAGGATGCGAAGATAGCC......................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.........AGGATGCGAAGATAGCCGTGGAA................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAACTCGCTGCTGCAGGAGGC..............................	21	1	1.00	1	1	0	0	0	0	0
.......................GCCGTGGAAGCAGTGCTGC......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............ATGCGAAGATAGCCGTGGAAGCA.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
AGCAGGCCGAGGATGCGA..............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACTCGCTGCTGCAGGAGGCC.............................	20	1	1.00	1	1	0	0	0	0	0
...............................AGCAGTGCTGCTGGAGAGG..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AGGAGGCCTGTGAAGAGTGGGATCA............	25	1	1.00	1	0	0	0	1	0	0
.....................TAGCCGTGGAAGCAGTGCTGCTG....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
............................GGAAGCAGTGCTGCTGGAGAGGAA............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CGCTGCTGCAGGAGGCCTGTGAAG......................	24	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................AGGAGGCCTGTGAAGAGTGGG................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................GAGTGGGATCAATGTGAGCGCA.	22	1	1.00	1	1	0	0	0	0	0
...........GATGCGAAGATAGCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................AGGAGGCCTGTGAAGAGTGGGAT..............	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................GAACTCGCTGCTGCAGGA.................................	18	1	1.00	1	0	0	1	0	0	0
..........GGATGCGAAGATAGCCGTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................GTGGAAGCAGTGCTGCTGGAGAGG..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................GCAGGAGGCCTGTGAAGAGTGGG................	23	1	1.00	1	0	0	0	0	0	1
...AGGCCGAGGATGCGAAGATA.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGTGAAGAGTGGGATCAATGTGAGCG...	26	1	1.00	1	1	0	0	0	0	0
............ATGCGAAGATAGCCGTGGA.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................GCCGTGGAAGCAGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAACTCGCTGCTGCAGGAG................................	19	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGAGTGGGATCAATGTGAGCGCA.	23	1	1.00	1	0	0	0	0	0	1
................................GCAGTGCTGCTGGAGAGG..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................ATAGCCGTGGAAGCAGTGCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAGGAGGCCTGTGAAGAGTGGGAT..............	25	1	1.00	1	0	0	0	0	0	1
...................GATAGCCGTGGAAGCAGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
........GAGGATGCGAAGATAGCCGTGGAAGCA.............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1

droGri2

AGCAGGCCGAGGATGCGAAGATAGCCGTGGAAGCAGTGCTGCTGGAGAGAGTAAGCTCATC-ATCA-----------------------------------------------------------------------------------------------------------------------------------AACA-------AC-T--------TCAAATTTAATTC------------------CAA----TCC------ATT---------------CATCA---TCTTTGTCCGT--------CTCT---------TT--CATAGAACTCGCTGCTGCAGGAGGCCTGCGAGGAGTGGGATCAATGCGAGCGCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................AGCCGTGGAAGCAGTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................GGAGGCCTGCGAGGAGTGGGATCAATG.........	27	1	1.00	1	1	0

dsi_14448

2l:4968422-4968521 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads