ID:

dsi_14441

Coordinate:

3r:4267605-4267739 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-9.0	-8.9	-8.8	-8.7

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
Gypsy9-I_Dya-int	LTR	Gypsy	-

Sense Strand Reads

TAAACTTAGTATTACGGACTTTTGGGAAATGGCTTTTTCGGCACAAAGAGGTACCATTTAGCTCATAGTGCACTGGTAGACAGCGTGTTCTGACATTTCTCTGAATTTTTCGGTAAAGAACTTCTGCCCTTTGTTCATAGGCTTTTACAATATCTTCAGCAAGAGAAAAATCTTTCAATTTGCAGATAGATTTACTCGAATTTCACAAGCAATGCAGCCGCAATTGGTTTTCCTG ****************************************************************************...((..............(((.(((((.....(((..((.....)))))....))))).)))))******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	SRR902008 ovaries	M025 embryo	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902009 testis
............TACGGACTTTTGGGAAATGGCTTA.......................................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
TAAACTTAGTATTACGGATTTTTGGGA................................................................................................................................................................................................................	27	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............CGGACTTTTGGGAAATGGCTTTTTCGG..................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................GACAGCGTGTTCTGACATTTCTCT.....................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................GTGCACTGGTAGACAGCGTG....................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................CTTTTTCGGCACAAAGAGGTACC....................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AAGAACTTCTGCCCTTTGTTCATAGGCT............................................................................................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................CAAAGAGGTACCATTTAGCTCAT.........................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....TTAGTATTACGGATTTTTGGGAAATGGCT.........................................................................................................................................................................................................	29	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............TACGGACTTTTGGGAAATGGC..........................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............CGGACTTTTGGGAAATGGC..........................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................GTTCTGACATTTCTCTGAATT................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................CATAGTGTACTGGTAGACAG........................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....TTAGTATTACGGACTTTTGGGAA...............................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................GTGTTCTGACATTTCTCT.....................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............CGGACTTTTGGGAAATGGCTT........................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TTTCGGTAAAGAACTTCTGCCC..........................................................................................................	22	0	3	0.67	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TCGGTAAAGAACTTCTGCCCT.........................................................................................................	21	0	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0
.........TATTACGGATTTTTGGGA................................................................................................................................................................................................................	18	1	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...............GGACTTTTGGGAAATG............................................................................................................................................................................................................	16	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0
..........................................................GAGCTCATAGTGCACT.................................................................................................................................................................	16	1	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0
........................................................................CTGGTAGACACTGTGTTC.................................................................................................................................................	18	2	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0
.AAACTTAGTATTACGGACTT......................................................................................................................................................................................................................	20	0	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0
...................................................TACGATTTAGGGCATAGTG.....................................................................................................................................................................	19	3	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0
....................TTTGGGAAAAGGGTGTTTCGG..................................................................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0
......................................................................CAATGGCAGACAGCGTGT...................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................AATCTTCTACAAGAGAAAAA.................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

ATTTGAATCATAATGCCTGAAAACCCTTTACCGAAAAAGCCGTGTTTCTCCATGGTAAATCGAGTATCACGTGACCATCTGTCGCACAAGACTGTAAAGAGACTTAAAAAGCCATTTCTTGAAGACGGGAAACAAGTATCCGAAAATGTTATAGAAGTCGTTCTCTTTTTAGAAAGTTAAACGTCTATCTAAATGAGCTTAAAGTGTTCGTTACGTCGGCGTTAACCAAAAGGAC ******************************************************************************************...((..............(((.(((((.....(((..((.....)))))....))))).)))))****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	M053 female body	SRR618934 dsim w501 ovaries	O002 Head	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
........................................................................GACCATCTGTCGCACAAGACT..............................................................................................................................................	21	0	1	2.00	2	0	2	0	0	0	0	0
....................................................................................CACAAGACTGTAAAGAGACTT..................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................AGAAGTCGTTCTCTTGTTAGAAACTT.........................................................	26	2	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................AGAAGTCGTTCTCTTTTTAGA..............................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................ACGTGACCATCTGTCGCACAAGA................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0
....................................AAGCCGTGTTTCTCCATG.....................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................AGCTTAAAGTGTTCGTTACGTCGGCGT.............	27	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................CTGTCGCACAAGACTGTAAAGAGACTT..................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................TAAAGAGACTCAATAAGGCAT........................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0
................................................................................GTCGCACAAGACTTTA...........................................................................................................................................	16	1	9	0.11	1	0	0	0	0	0	0	1
.............................................................................................................................CGGGAATCAAGTAACCAAAAA.........................................................................................	21	3	10	0.10	1	1	0	0	0	0	0	0
.............................................................................................................................CGGGAAACTAGTGTCC..............................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0

Generated: 04/23/2015 at 11:49 PM