ID:

dsi_1444

 Coordinate:

3l:8189077-8189226 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.3 -31.9 -31.8

Flybase annnotation

CDS [3l_8188964_8189746_+]; exon [3l_8188948_8189785_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GTGCACCCCAAGGATCTGCCCAAGGTGGGCAAGATCGAGGGTCGCATTACCAACGGCTACCCGGCGGAGGAGGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGTGCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTTACCGCCGAGCACTGCATCGGAGGTGATGCCGTGACTGTCTACTTCGGAGCCACCTGGCGCACCAACGCCCAGTTCACCCACTGGGTTGGAAGCG
********************************************************************************..((((.(((...))).)))).....((((..((((((((((.((.(((.((((..((......)))))))))))))))))).))).))))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 GSM343915
embryo
 M024
male body		 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................................................GATGCCGTGACTGTCTACTTCGGAGC............................................ 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GACTGTCTACTTCGGAGC............................................ 18 0 2 2.50 5 5 0 0 0 0 0 0 0 0 0
................................................................................TCCCTACACCGTCGGTCTGG...................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............CTGCCCAAGGTGGGCAAGATCGAGG.................................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTTACCGCCGAGCACTGC............................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GATGCCGTGACTGTCTACTTCGGA.............................................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAGCACTGCATCGGAGGTGA.................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACTGCATCGGAGGTGATGCC................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GTCCTTACCGCCGAGCACTGCATCGGA......................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GATGCCGTGACTGTCTACTTCGG............................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGGAGCCACCTGGCGCACC............................... 19 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.................................ATCGAGGGTCGCATTACCAAC.................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGGTGGCTCCATCATCTCCAACGA........................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................CAAGATCGAGGGTCGCATTACCAACG................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................GGCAAGGCTCCCTACACCGTCGGTCT........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GATGCCGTGACTGTCTACCTCGG............................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................CACCGTCGGTCTGGGTTTCAGC.............................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................GCCGTGACTGTCTACTTCGGAGC............................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................GATCGAGGGTCGCATTACCAAC.................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAGCACTGCATCGGAGGTG..................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTCGGAGCCACCTGGCGCACC............................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................GGCTCCCTACACCGTCGGTCT........................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................CCAAAACCGTCGGTGTGGGTT................................................................................................................................................... 21 3 3 1.00 3 0 0 0 1 2 0 0 0 0 0
......................AGGTGGGCAAGATCGAGGGTCGCA............................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GTGGTGCGGTGGCTCCATCATCTC.............................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................GAGGGCAAGGCTCCCTACACCGT.............................................................................................................................................................. 23 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0
..............................AAGATCGAGGGTCGCATTA......................................................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTGACTGTCTACTTCGGAGC............................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACTTCGGAGCCACCTGGCGCACC............................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACTTCGGAGCCACCTGGCGC.................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTGTCTACTTCGGAGCCACCTGGCGCACC............................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTGACTGTCTACTTCTGAGC............................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGACTGTCTACTTCGGAGC............................................ 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................GCAAGATCGAGGGTCGCATTACC....................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................GGCTCCCTACACCGTTGGTCTG....................................................................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTCGGAGCCACCTGGCGCACCAACGCC......................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTGACTGTCTACTTCGGAG............................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CCGTGACTGTCTACTTCGGAGC............................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACCTGGCGCACCAACGCC......................... 18 0 4 0.50 2 0 0 0 0 0 2 0 0 0 0
...............................................................................................................GGCTGGTGGTGCGGTGGCT........................................................................................................................ 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................................................CTACACCTTCGGTCT........................................................................................................................................................ 15 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................ACCAACGCCCAGTTTACCCACTGGGTT....... 27 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
........................................................................GGCAAGGCTCCCTACACCGT.............................................................................................................................................................. 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
........................................................................GGCAAGGCTCCCTACACC................................................................................................................................................................ 18 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.............................CAAGATCGAGGGTCGCAG........................................................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................GCTGGTGGTGCGGTGGCTCC...................................................................................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................GGCGGCTGGTGGTGCGGT............................................................................................................................ 18 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................GGCGGCTGGTGGTGCGGTG........................................................................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................................................................AGGGCAAGGCTCCCTACACCG............................................................................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................GGCTGGTGGTGCGGTGGCTC....................................................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...........................................GCATTACCAACGGCTACCC............................................................................................................................................................................................ 19 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..........................................CGCATTACCAACGGCTACCC............................................................................................................................................................................................ 20 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................................................CCAAAACCGTCGGTGTGGGT.................................................................................................................................................... 20 3 8 0.25 2 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................................................................GCACCAACGCCCAGTTCACC................ 20 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.................GCCTAAGGTGGGACAGAT....................................................................................................................................................................................................................... 18 3 20 0.20 4 0 2 0 2 0 0 0 0 0 0
.......................................................................................................................GTGCGGTGGCTCCATCATC................................................................................................................ 19 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
................................GATGGAGGGACGCATTAC........................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACCAACGCCCAGTTCACCCAC............. 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GACTCCCTGCTTCGGAGCCA.......................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CCGTGACTGTCTACCTGG................................................ 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
............................................................CCGGCGGAGGAGGGGA.............................................................................................................................................................................. 16 1 13 0.15 2 0 0 0 0 0 0 0 2 0 0
...........................................................................................................CGGCAGCTGGCGGTGCCGTGGC......................................................................................................................... 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
............................................................CCGGCGGAGGAGGGGAA............................................................................................................................................................................. 17 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0
...........................GGCAAGATTGAGGGTTGTA............................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................GACTCTCCGCTTCGGAGCC........................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................GACTCCCTGCTTCGGAGCC........................................... 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................GGCGCGGTGGCTCCA..................................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 0 0 0 1 0
.....CCTCCAGGATCGGCCCAAG.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................GGCTCATTAGACCGTCGG........................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CACGTGGGGTTCCTAGACGGGTTCCACCCGTTCTAGCTCCCAGCGTAATGGTTGCCGATGGGCCGCCTCCTCCCGTTCCGAGGGATGTGGCAGCCAGACCCAAAGTCGCCGCCGACCACCACGCCACCGAGGTAGTAGAGGTTGCTCACCCAGGAATGGCGGCTCGTGACGTAGCCTCCACTACGGCACTGACAGATGAAGCCTCGGTGGACCGCGTGGTTGCGGGTCAAGTGGGTGACCCAACCTTCGC
*******************************************************************************..((((.(((...))).)))).....((((..((((((((((.((.(((.((((..((......)))))))))))))))))).))).))))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.......................................................................................................................................................AGGAATGGCGGCTCGTG.................................................................................. 17 0 2 0.50 1 1 0 0 0 0 0
...............................TCTAGCTCCGAGCGTACTTGT...................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0
...............................................................................................................................CGAGGTTGCGGAGGTTGCTCA...................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0
.............................................................................................................................................................................................................GGTTGACGGCGTGGTTGCGTGT....................... 22 3 6 0.17 1 0 0 0 1 0 0
.............................................................................CCGAGGGATCTGTCAGCCT.......................................................................................................................................................... 19 3 6 0.17 1 0 0 1 0 0 0
.............................................................................................................................................................................................................GGTGGACCTGTTGGTTGCGG......................... 20 3 20 0.15 3 0 3 0 0 0 0
........................................................................................................................................................................................................................TGGTTGCGGGGCAAG................... 15 1 9 0.11 1 0 1 0 0 0 0
......................................................................................................................................................................................................................CGTGGTTGAGGGTCAA.................... 16 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TTGGTTGCGGGCCATGTGG................ 19 3 15 0.07 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................GTGGTTGCTGGTCAA.................... 15 1 16 0.06 1 0 0 0 0 1 0
................ACGGGTTCCAGCCGT........................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:44 AM