ID:

dsi_14404

 Coordinate:

x:11982024-11982173 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.6 -7.6 -7.55

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. 2l:1557122-1557144 -
  2. 2l:17104666-17104688 -
  3. 2l:17105284-17105306 -
  4. 2r:10125332-10125354 -
  5. 2r:10213510-10213532 -
  6. 3r:11793440-11793462 -
  7. 3r:17407419-17407441 -
  8. 3r:19225500-19225522 -
  9. 4:959265-959287 -
  10. x:4653426-4653448 -
  11. x:7493903-7493925 -
  12. x:7669243-7669265 -
  13. x:7988397-7988419 -
  14. dsi_14404  x:11982121-11982143 -
  15. x:14764110-14764132 -
  16. x:16009324-16009346 -
  17. x:19627903-19627925 -
  18. x:19688235-19688257 -
  19. node_68951:169-191 -
  20. node_66605:761-783 -
  21. 2l:2779411-2779433 +
  22. 2l:3531141-3531163 +
  23. 2l:22851576-22851598 +
  24. 2r:1927377-1927399 +
  25. dsi_601  2r:16809482-16809504 +
  26. 3l:3600726-3600748 +
  27. 3l:7685416-7685438 +
  28. x:2813078-2813100 +
  29. x:7504579-7504601 +
  30. x:7579727-7579749 +
  31. x:7847997-7848019 +
  32. x:11359424-11359446 +
  33. x:18126333-18126355 +
  34. node_86027:248-270 +
  35. node_127332:253-275 +
  36. node_15830:575-597 +
  37. node_23833:4059-4081 +
  38. node_36212:1825-1847 +
  39. node_110260:113-135 +
  40. node_55119:7693-7715 +
star

Sense Strand Reads

AATATTTATGGCCATTATCGATTTTCTAATCATTTAACCTGCTATGCCTGCTATCGTAAGCTTCCCCCACTTCCCACCCATATTTTTTTTTTTTTTTTTTTTTTTTTTTGNGTGTTTGTTTTTTTTTTTTTTTTTAGCTTTTTTGTGTGTTGATTTTTTGCAACTAATCAGAGTGTTTCTCTATCTTTCGTTTTTTGCAGTTCGAAATGGACGGACCGGCGGTTTGGATGGATGGATGATAAAAAAAAGT
**************************************************........................(((.((............................)).)))...................(((((..........)))))....((((((..(((.((((...........)))).)))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
...................................................................................................................................................................................................TGCAGTTCGAAATGGACGGACCGGCG............................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCGGCGGTTTGGATGGATGGATGATAA........ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGACGGACCGGCGGTTTGGATGGA.................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................GTTTGGATGGATGGATGATAAA....... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................ATGGTTGGACGATAAAAAAA... 20 2 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTTGTTTGGATGGATGATAAAA...... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TTCTCATTCTTACGTTTTTTGC.................................................... 22 3 4 0.25 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................ATGGATGGATGAGATAAA..... 18 2 9 0.11 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................TGCATGGATGAAAAAAAAA... 19 2 12 0.08 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................ATGGAAGGAGGATAAAGAAAA.. 21 3 12 0.08 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TTGGATGATAAAAAAA... 16 1 15 0.07 1 0 0 0 1 0 0 0 0
..................................................................................................................TTAGTTTTCTTTTTTTTTTTTAGGTT.............................................................................................................. 26 3 17 0.06 1 0 0 0 0 1 0 0 0
................................................................................TATTTTTTTTTTTTTTTTTTTTT................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................TATTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................ 26 0 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................................................TTTTTTTTTTTTTTTTTTT............................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 1
.................................................................................ATTTTTTTTTTTTTTTTTTTTTT.................................................................................................................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................................................................................TTTGTGTGTTGATATT............................................................................................. 16 1 20 0.05 1 0 0 0 0 0 1 0 0
.................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTTT............................................................................................................................................. 28 0 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................TATTTTTTTTTTTTTTTTTTTTTT.................................................................................................................................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTATAAATACCGGTAATAGCTAAAAGATTAGTAAATTGGACGATACGGACGATAGCATTCGAAGGGGGTGAAGGGTGGGTATAAAAAAAAAAAAAAAAAAAAAAAAAAACNCACAAACAAAAAAAAAAAAAAAAATCGAAAAAACACACAACTAAAAAACGTTGATTAGTCTCACAAAGAGATAGAAAGCAAAAAACGTCAAGCTTTACCTGCCTGGCCGCCAAACCTACCTACCTACTATTTTTTTTCA
**************************************************........................(((.((............................)).)))...................(((((..........)))))....((((((..(((.((((...........)))).)))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 M023
head
 SRR902009
testis
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
........................................................................................AAAAAAAAAAAAAAAAAAAAA............................................................................................................................................. 21 0 20 9.05 181 181 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................. 22 0 20 7.70 154 154 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................ 23 0 20 6.35 127 127 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAACCTACCTACGGACGATTT....... 21 3 4 1.75 7 0 5 0 0 0 0 1 1 0 0 0 0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................... 25 0 20 0.60 12 0 0 12 0 0 0 0 0 0 0 0 0
.......................................................................................AAAAAAAAAAAAAAAAAAAA............................................................................................................................................... 20 0 20 0.60 12 0 0 0 0 0 12 0 0 0 0 0 0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................. 26 0 20 0.55 11 0 0 0 0 11 0 0 0 0 0 0 0
....................................................................................AAAAAAAAAAAAAAAAAAAA.................................................................................................................................................. 20 0 20 0.40 8 0 0 8 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAAAAAAAAATAAAATCGAAAAAAA......................................................................................................... 26 2 8 0.25 2 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................TAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................... 22 0 20 0.20 4 2 0 0 0 0 0 0 0 0 0 2 0
............................................................................................................................................................................................................................CCAAAGCTGCCTACCTAC............ 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................AAAAAAAAAAAAAAAAC............................................................................................................................................ 17 0 20 0.15 3 0 0 0 2 0 0 0 0 1 0 0 0
.................................................................................TAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................. 23 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0
........................................................................................................................AAAAAAAAAAAAAAATTGAAAAAA.......................................................................................................... 24 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................AACAAAAAAAAAAAAAA...................................................................................................................... 17 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................TAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................. 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AACCTACCTACGGACGATTT....... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................AAAAAAGAAAAAAAAATTGAAAAAA.......................................................................................................... 25 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAAAACGTTGAGAAGTCT.............................................................................. 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................GGGATGATAGCGTTCGAAG.......................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................CAAAAAAAAAAAAAAAAATCGGTAAAT.......................................................................................................... 27 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................AAAAAACGTAAAGCTTT........................................... 17 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
..........CGGTAATAGCTAAAACATAT............................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................GATTCGGACGGTAGCAGT............................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................AACAAAAAAAAAAAAAAA..................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................GGGTGGGGGGTGGGTATA....................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AAAAAAAAAAAAAAAATCTAAAA............................................................................................................ 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................AAAAAAAAAAAAAAAAATC................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11981974-11982223 - dsi_14404 AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTA---ACCTGCTAT--------------------GCCTGCTATCGTAAGCTTCC-CCCACTTC----------------------------------------------------CCACCCATATTTTTTTTTTTTTTTT-------T-T---TTTTTTT--TT----GNGTGTTTGTTTTTTTTTTTTTTTTTAGCT----TTTTTGT-------GTGTTG---------A------------------------------------------------------------------TTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTATCTTTC--------------GTT-T---TTTGCAGT---------TCG-AA--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--A-AAAGT
droSec2 scaffold_21:380300-380530 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTA---ACCTGCTAT--------------------GCCTGCTATCGTAAGCTCCC-C-----------------------------CCACTTCC-----------CCCACCACCCCCCACCCATATTTTT-----------TTTTTTT---TTT----------------------------T------TTTTTTAGCT----TTCTTGT-------GTGTTG---------G------------------------------------------------------------------TTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------GTT-T---TTTGCAGT---------TCG-AA--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--A-AAAGC
dm3 chrX:12626383-12626570 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTTT-TT-------------------------------------------------TT----------------------------------TTTTTTTAGCT----TGTTTGT-------GTGTTG---------A------------------------------------------------------------------TTTTC-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------GTT-T---TTTGCAGT---------TCG-AT--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--TAAAAGT
droEre2 scaffold_4690:14224053-14224233 + AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTT---ACCTGCTAA--------------------GCCTGCTATA-------------------------------------------------GTTTTT-TT-------------------------------------------------------------------------------------------CTGCT----TGCTTGT-------GTGTTG---------A------------------------------------------------------------------T-TTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------GCTTT---CTTGCAGG---------TCG-AA--A----TGGACG-GACCGG------------------------------------------ACGG----ATTGGATG-C---GTGGATGATAAAA--TTAAAGT
droYak3 X:6907765-6907980 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTT---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTATT-TT---------------GTTGC---------------------------T---TTTTTTT--TT----AT-------TTTTTTTTCCTTTTGTTAACTTGTTTGTTTGT-------GTGTTG---------A------------------------------------------------------------------TATTT-------------TGCA--ACTAA----TCAGAG----------------------TGTGTTTCTCTTTCTTTC--------------GTT-T---TTTGCAGG---------TCG-AA--A----TGGACG-GACGGG------------------------------------------ACGG----ATT----G-G---ATGGATGATAAAA--TAGAAGT
droEug1 scf7180000409110:1023235-1023399 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------TCCTGCTATC-------------------------------------------------GATTCT-CA-------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTTT-------------TGCA--ACTAA----TCAGTG----------------------TT--TTTTCCTT-----A--------------CTT-T---TTTGCAGG---------TTGAAA--AAAAATGGACG-T--CGT----C-G----------------------------------TTCG-------TCGCCG-G---TTGGATGATAAAA--ACAAAGT
droBia1 scf7180000298389:214091-214264 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTA-----------------------------TC-------------------------------------------------GTTTTT-TT---------CCCTCCA-----------------------------------------T--TT----GTGT-----------------------------------G-CTTTTTTTTTTTG---------CTCTTTGCAAATAA--------------------------------------------------------------------------T--ACTAA----TCAGAG----------------------TGTGTTTCTCCTTCTTTC--------------CTT-T---TTTGCAGG---------TCG-AA--A----TGGACG-G--C-----------------------------------------------------------G-G---TTGGATGATAAAA--ACAAAGT
droTak1 scf7180000413903:58290-58430 + AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTT---GCCTGCTAT--------------------GCCTGCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCCTTCTTTC--------------TTT-T---TTTGCAGT---------TCG-AA--A----TGGACG-T--C--------------------------------------------------------GACG-A---CTGGAAGATAAAAACACTAAGT
droEle1 scf7180000491023:318769-319021 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTCT-TC---------ATTCGTGTGTGT------------------------C-T---TTTTTTT--TT----GTG--------------------------------------------------------------------------------------CGAGTGTGTTTTTCTTGTTGTTG-T------TGTT-----G-----TTGTTGTTTTTTTTGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------CTT-T---TTTGCAGG---------TCG-AA--A----CGGACG-G--CGG----CAG---TTGGACGGACGGACGGACGGACGGACGGACGGA---------CGGACG-G---ATGGATGATAAAA--CCAAAGT
droRho1 scf7180000779985:41897-42082 + AATATTTATGGACATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTGTTTC---------TTTCGTGTGTG--------------------------------------------------------------------------TC----TTTTTGT-------GTTTTA---------A-----------------------------------------------------------------TTTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------CT--T---TTTGCAGG---------TCG-AA--T----CGGACG-G--CGG----TCG----------------------------------GA---------CGGACG-G---ATGGATGATAAAA--C-GAAGT
droFic1 scf7180000454050:535485-535686 - AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------TTCTTCTTTC-------------------------------------------------GTGT----------------------GTGT------------------------C-T-----TTTGT--TT----GTG---------------------T-----------------------------------------------------------------GAGTGT-------TTGTTGTTGGT---TGTTTTGTTTTCTTTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------CT--T---TTTGCAGG---------TCG-AA--ACAAATGGACG-G--CGG----CAG--------------------------------------------TTGGACG-G---ACGGATGATAAA----CGAAGT
droKik1 scf7180000302621:76202-76378 + AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTGT-GA-------------------------------------------------------------------------------------------------------CTGT-------TACTTTATTTTTTTTG------------------------------------------------------------------T-CAT-------------ATCG--ACTAA----TCAAAG----------------------TA--TTCTTCTTTTTTTT--------------TTTTTTTTTTTGTCAGG--------TTG-AAAAT----CGAACG-AAAACAACAGCGG-------------------------------------------CA---ACG-G----C----GG-------A-AAAGT
droAna3 scaffold_13117:3551250-3551488 - ATTATTTATGGCTTTTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GACTGCCAAA-------------------------------------------------CAGTCT-TTTTTTTAGGC-TTTTTGTTAC---------------------------T---CTTTTTA--TA----ATATATATATTTTT------TTTTATAATATA--TA--------------------------------------------------------------------TATTTTTT-TTAATAATAT---ATATTTTTT-------------AACA--ACTAA----TCTTAT----------------------TT--TTTTACG----------AATTTATTTTCCT--T---TTTTCAGA---------CTTAAA-GT----CAAAGG-CACTCG----ATG-------------------------------------------ACGGGATGAG----ATTTTGAA--------AAAAA
droBip1 scf7180000395895:7072-7255 + AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------CCCTGCTATA-------------------------------------------------TGTTTT-CT-----------------------------------------TTGT---TTT----------------------------T------TTTTATAA--------------------------------------------------------------------------------------------------ATATTTTTT-------------CGCA--ACTAA----TCT-----------------------------TTTCTTTTTTTTTTGTGAATTGCTTTA-CCT-T---TTT-CAGG---------CTTGAA--G----CGAACG-CACGGC----------------------------------------------------TGGATGGGATTTTGGATGATAAAC--C-AG---
dp5 XL_group1a:3424728-3424893 - ATTATTTATGGCCCTTATCGATTTTCTAATC-----------------------------------------AAC-------ATTC-----------------------------TATC-------------------------------------------------GAT----------------------------------------------------------------------------------------------------------TGAATGT-------GTGTTT---------A------------------------------------------------------------------T-TTT-------------TGCA--TCGAACTAATC--------------------------TC--TCTCTCTCTCTCTT--------------TCT-A---TCTGCAGGTCTCTAAAGCGTGGG--ACAAAGAGGTGGAGCAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-GCCGT
droPer2 scaffold_13:39783-39894 + TTTTTCTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTTT--TT----GTG-------------------------TG----TGTGTGT-------GTGTTG---------G------------------------------------------------------------------T-TTT-------------GTCG--ACTAC----TTTGCG----------------------TC--TCCTTCTTCGT--C--------------GTC-------------------------------------GT-------------C-GTCA--------------------------------ACG-------TCGCTGCG---GTCGTTGATACAA--A-AAGTT
droWil2 scf2_1100000004511:3126117-3126288 - AATATATATATGTATA------TATATATAC-----------------------------------------ATATA---TCTTCCTATTATTATGGTGGA-----------TGCTTTA---------------GTTTTC------TTCTATTTAA-----ATTTTT-GTTT------------------------------------------------------ATTTTTTTTATTTGTTTTTTT-----------------------------------G-TTTTTTTTTTTTT---------TTGT-----------------------------------------------------TTTA----------------------------------T----TTTGTGTTTGCTTTTCGAACAAATAAAATG--TTTGGCCTTTTTTC------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:7506655-7506824 + AATTTATTTATTTATTGCTTTA---TTA---------------------------------------------TTT---------------------TTGGTCTTTTATTATTACTTTT-------------------------------ATTT-------AATTTT-GTTTAG-TT---------ATTTATATTCGTTTTTTT-----------TTTTAT-----TT--------------------------TTT------TTTTTTATTA----TTTA----------------------------------------------------------------------------------TGTT---TAG-----TTGTTGAGTATATTCTTATTCATA----TTGGAC----------------------TA--TTTTTTTTTTTTTT--------------TTT-T---TT------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_2892:3112-3395 - AATATTTTTGGTAATTTTTTTTTTTTTTTTTCAGATTAAGATATGTGGACCCCCAATGGCAATCAGGTAAGTATATATGAAATTATTA-----------------------TTATTATTTTTTTTTTTTCCATATTTATTGGCAGCA------TATATTATTATTTTT-----------TTCAGCTATTTTCTTTTTCAGATTT---AACTTTTT-------TTTTTTTTTTTTT----------TGATTTTTTTTTTTTTTTTTTTTTAGCT----ATTTTAT-------CTTTTT--------------------------------------------------------TA-A------CA------TTTTATT-------------GGCA--ACTAG----TTATTA----------------------TT--TTTTAAG----------CCTCT----------T---TTAGCATT---------TTT-------------------------------------------------------------------------------------------------------TAGTT
droGri2 scaffold_14853:6792738-6792944 + GACACTTTTAGC------TGACTTTGTAGCC-----------------------------------------ATTTT---GCTTGCTAT--------------------CTCTATCGCT---TCCTAGC-T-----------------------------CTGTCTCT-----------CTCACTCACTCCCACTCTCGCTCTC-----------TCTCTCT---CTC----------------------------T------C--------------------------------T---------CTCTCTGTATCTGTTCGTGTTCTGTGTGTGTTCATTTCCGTTTCCGTTG-C------CA------------------------------------T----T-------------------------------------------------------------------------------------GA-AA--TTATGTTGTTG-G--CTG----TCT----------------------------------TTGTGTTTAGCTGCTTGCG-------------GT---TCTTAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTA---ACCTGCTAT--------------------GCCTGCTATCGTAAGCTTCC-CCCACTTC----------------------------------------------------CCACCCATATTTTTTTTTTTTTTTT-------T-T---TTTTTTT--TT----GNGTGTTTGTTTTTTTTTTTTTTTTTAGCT----TTTTTGT-------GTGTTG---------A------------------------------------------------------------------TTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTATCTTTC--------------GTT-T---TTTGCAGT---------TCG-AA--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--A-AAAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGT---------TCG-AA--A----TGGACG-GACCGG----CG...............................................................................2612.00200000000000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAA...........2711.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---A.....................2511.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------TTTGGATG-G---ATGGATGATAAA..........2211.00100010000000000000
.....................................................................................................................................................................................................TATTTTTTTTTTTTTTTT-------T-T---TTT...................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000000010000
.....................................................................................................................................................................................................TATTTTTTTTTTTTTTTT-------T-T---TTTTTT................................................................................................................................................................................................................................................................................................................................................................................26200.05100010000000000000
...............................................................................................................................................................................................................TTTTTTTT-------T-T---TTTTTTT--TT----.......................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
......................................................................................................................................................................................................ATTTTTTTTTTTTTTTT-------T-T---TTTT..................................................................................................................................................................................................................................................................................................................................................................................23200.05100010000000000000
......................................................................................................................................................................................................ATTTTTTTTTTTTTTTT-------T-T---TTTTTTT--TT----.......................................................................................................................................................................................................................................................................................................................................................................28200.05100010000000000000
.....................................................................................................................................................................................................TATTTTTTTTTTTTTTTT-------T-T---TTTT..................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000000000
droSec2
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTA---ACCTGCTAT--------------------GCCTGCTATCGTAAGCTCCC-C-----------------------------CCACTTCC-----------CCCACCACCCCCCACCCATATTTTT-----------TTTTTTT---TTT----------------------------T------TTTTTTAGCT----TTCTTGT-------GTGTTG---------G------------------------------------------------------------------TTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------GTT-T---TTTGCAGT---------TCG-AA--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--A-AAAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---......................2611.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT---------TCG-AA--A----TGGACG-GACCGG----CGG-------------------------------------------T..................................2511.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATG-G---ATGGATGATAAAA--.......2111.0010010
dm3
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTTT-TT-------------------------------------------------TT----------------------------------TTTTTTTAGCT----TGTTTGT-------GTGTTG---------A------------------------------------------------------------------TTTTC-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------GTT-T---TTTGCAGT---------TCG-AT--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--TAAAAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------TCG-AT--A----TGGACG-GACCGG----C................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-AT--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGA.............................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGG----CGG-------------------------------------------TTTGGATG-G---ATGG..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGG----CGG-------------------------------------------TTTGGATG-G---A.....................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG----CGG-------------------------------------------TTTGGATG-G---ATGGAT................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGA.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGG..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG----CGG-------------------------------------------TTTGGATG-G---ATGGAT................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGT---------TCG-AT--A----TGGACG-GACCGG----C................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTAGCT----TGTTTGT-------GTGTA..................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGAT................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGT---------TCG-AT--A----TGGACG-GAC........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGT---------TCG-AT--A----TGGACG-GACC.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-------------------------------------------TTTGGATG-G---ATGGATGAT.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-AT--A----TGGACG-GACCGG----CG...............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGAT............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-AT--A----TGGACG-GACCGG----CGG-------------------------------------------...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGATAAAA--TAAAA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AT--A----TGGACG-GACCGG----CG...............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGG..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------TCG-AT--A----TGGACG-GACCGG----CGG-------------------------------------------TTT................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............TTATCGATTTTCTAATC-----------------------------------------ATTTA---ACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CT----TGTTTGT-------GTGTTG---------A------------------------------------------------------------------TTTTC-------------TG.................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG-G---ATGGATGATAAAA--T......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................TTTT-TT-------------------------------------------------TT----------------------------------TTTTTTTAGCT----TG...................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGT---------TCG-AT--A----TGGACG-G..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------TTTGGATG-G---ATGGATGAT.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-AT--A----TGGACG-GACCGG----CGG-------------------------------------------TTTGG..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------TCG-AT--A----TGGACG-GACC.......................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CT----TGTTTGT-------GTGTTG---------A------------------------------------------------------------------TT...................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------GTT-T---TTTGCAGT---------TCG-AT--A----TGGACG-GACC.......................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGG----CGG-------------------------------------------TTTGGATG-G---ATGGAT................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGG----CGG-------------------------------------------TTTGGATG-G---ATGGA.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATG-G---ATGGATGATAAAA--TAAAAG.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACG-GACCGG----CGG-------------------------------------------TTTGGATG-G---ATG...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTC--------------GTT-T---TTTGCAGT---------TCG-AT--A----..................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGG----CGG-------------------------------------------TTTGGATG-G---ATG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT---------TCG-AT--A----TGGACG-GACCGG----.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG-------------------------------------------TTTGGATG-G---ATGGATGATAAAA--.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGG----CGG-------------------------------------------TTTGGATG-G---ATGGATGAT.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................................................................................................................................................................TTTTT-TT-------------------------------------------------TT----------------------------------TTTTTTTAGCT----T....................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTT---ACCTGCTAA--------------------GCCTGCTATA-------------------------------------------------GTTTTT-TT-------------------------------------------------------------------------------------------CTGCT----TGCTTGT-------GTGTTG---------A------------------------------------------------------------------T-TTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------GCTTT---CTTGCAGG---------TCG-AA--A----TGGACG-GACCGG------------------------------------------ACGG----ATTGGATG-C---GTGGATGATAAAA--TTAAAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................TGCTTGT-------GTGTTG---------A------------------------------------------------------------------T-TTT-------------TGC................................................................................................................................................................................................................2111.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------ACGG----ATTGGATG-C---GTGGAT................2011.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGG------------------------------------------ACGG----ATTGGATG-C---......................1911.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGG------------------------------------------ACGG----ATTGGATG-C---GTGGAT................2511.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGG------------------------------------------ACGG----ATTGGATG-C---GTGGATG...............2611.0010000010
droYak3
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATTTT---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTATT-TT---------------GTTGC---------------------------T---TTTTTTT--TT----AT-------TTTTTTTTCCTTTTGTTAACTTGTTTGTTTGT-------GTGTTG---------A------------------------------------------------------------------TATTT-------------TGCA--ACTAA----TCAGAG----------------------TGTGTTTCTCTTTCTTTC--------------GTT-T---TTTGCAGG---------TCG-AA--A----TGGACG-GACGGG------------------------------------------ACGG----ATT----G-G---ATGGATGATAAAA--TAGAAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GACGGG------------------------------------------ACGG----ATT----G-G---ATGGAT................2211.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGG---------TCG-AA--A----TGGACG-GACGG......................................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AA--A----TGGACG-GACGGG------------------------------------------ACGG----ATT----G-..........................2411.00100000010000
droEug1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------TCCTGCTATC-------------------------------------------------GATTCT-CA-------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTTT-------------TGCA--ACTAA----TCAGTG----------------------TT--TTTTCCTT-----A--------------CTT-T---TTTGCAGG---------TTGAAA--AAAAATGGACG-T--CGT----C-G----------------------------------TTCG-------TCGCCG-G---TTGGATGATAAAA--ACAAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTA-----------------------------TC-------------------------------------------------GTTTTT-TT---------CCCTCCA-----------------------------------------T--TT----GTGT-----------------------------------G-CTTTTTTTTTTTG---------CTCTTTGCAAATAA--------------------------------------------------------------------------T--ACTAA----TCAGAG----------------------TGTGTTTCTCCTTCTTTC--------------CTT-T---TTTGCAGG---------TCG-AA--A----TGGACG-G--C-----------------------------------------------------------G-G---TTGGATGATAAAA--ACAAAGTSizeHit CountTotal NormTotal
No Reads
droTak1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTT---GCCTGCTAT--------------------GCCTGCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCCTTCTTTC--------------TTT-T---TTTGCAGT---------TCG-AA--A----TGGACG-T--C--------------------------------------------------------GACG-A---CTGGAAGATAAAAACACTAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTCT-TC---------ATTCGTGTGTGT------------------------C-T---TTTTTTT--TT----GTG--------------------------------------------------------------------------------------CGAGTGTGTTTTTCTTGTTGTTG-T------TGTT-----G-----TTGTTGTTTTTTTTGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------CTT-T---TTTGCAGG---------TCG-AA--A----CGGACG-G--CGG----CAG---TTGGACGGACGGACGGACGGACGGACGGACGGA---------CGGACG-G---ATGGATGATAAAA--CCAAAGTSizeHit CountTotal NormTotal
No Reads
droRho1
AATATTTATGGACATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTGTTTC---------TTTCGTGTGTG--------------------------------------------------------------------------TC----TTTTTGT-------GTTTTA---------A-----------------------------------------------------------------TTTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------CT--T---TTTGCAGG---------TCG-AA--T----CGGACG-G--CGG----TCG----------------------------------GA---------CGGACG-G---ATGGATGATAAAA--C-GAAGTSizeHit CountTotal NormTotal
No Reads
droFic1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------TTCTTCTTTC-------------------------------------------------GTGT----------------------GTGT------------------------C-T-----TTTGT--TT----GTG---------------------T-----------------------------------------------------------------GAGTGT-------TTGTTGTTGGT---TGTTTTGTTTTCTTTTTT-------------TGCA--ACTAA----TCAGAG----------------------TG--TTTCTCTTTCTTTC--------------CT--T---TTTGCAGG---------TCG-AA--ACAAATGGACG-G--CGG----CAG--------------------------------------------TTGGACG-G---ACGGATGATAAA----CGAAGTSizeHit CountTotal NormTotal
No Reads
droKik1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GCCTGCTATC-------------------------------------------------GTTTGT-GA-------------------------------------------------------------------------------------------------------CTGT-------TACTTTATTTTTTTTG------------------------------------------------------------------T-CAT-------------ATCG--ACTAA----TCAAAG----------------------TA--TTCTTCTTTTTTTT--------------TTTTTTTTTTTGTCAGG--------TTG-AAAAT----CGAACG-AAAACAACAGCGG-------------------------------------------CA---ACG-G----C----GG-------A-AAAGTSizeHit CountTotal NormTotal
No Reads
droAna3
ATTATTTATGGCTTTTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------GACTGCCAAA-------------------------------------------------CAGTCT-TTTTTTTAGGC-TTTTTGTTAC---------------------------T---CTTTTTA--TA----ATATATATATTTTT------TTTTATAATATA--TA--------------------------------------------------------------------TATTTTTT-TTAATAATAT---ATATTTTTT-------------AACA--ACTAA----TCTTAT----------------------TT--TTTTACG----------AATTTATTTTCCT--T---TTTTCAGA---------CTTAAA-GT----CAAAGG-CACTCG----ATG-------------------------------------------ACGGGATGAG----ATTTTGAA--------AAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AATATTTATGGCCATTATCGATTTTCTAATC-----------------------------------------ATCTA---ACCTGCTAT--------------------CCCTGCTATA-------------------------------------------------TGTTTT-CT-----------------------------------------TTGT---TTT----------------------------T------TTTTATAA--------------------------------------------------------------------------------------------------ATATTTTTT-------------CGCA--ACTAA----TCT-----------------------------TTTCTTTTTTTTTTGTGAATTGCTTTA-CCT-T---TTT-CAGG---------CTTGAA--G----CGAACG-CACGGC----------------------------------------------------TGGATGGGATTTTGGATGATAAAC--C-AG---SizeHit CountTotal NormTotal
No Reads
dp5
ATTATTTATGGCCCTTATCGATTTTCTAATC-----------------------------------------AAC-------ATTC-----------------------------TATC-------------------------------------------------GAT----------------------------------------------------------------------------------------------------------TGAATGT-------GTGTTT---------A------------------------------------------------------------------T-TTT-------------TGCA--TCGAACTAATC--------------------------TC--TCTCTCTCTCTCTT--------------TCT-A---TCTGCAGGTCTCTAAAGCGTGGG--ACAAAGAGGTGGAGCAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-GCCGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-G....2715.0050001003010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-.....2433.0090800001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-C....2711.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGA...........2311.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--.......2511.0010000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-.....2711.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGG----CGG-------------------------------------------T--GGA---G---GAGGAGG...............2020.5010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-G....2450.4020000011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-G....2530.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-G....2630.3310000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------T--GGA---G---GAGGAGGAGGAGG--A-.....20200.1530300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTGGAGCAGG----CGG-------------------------------------------A--T...............................1990.1110100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG----CGG-------------------------------------------T--GGA---G---GAGGAGGAGG............20130.0810100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G---GAGGAGGAGGAGG--A-GCC..19140.0710100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CGG-------------------------------------------T--GGA---G---GAGGAGGAG.............18190.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GAGGAGGAGGAGG--A-GCC..18190.0510010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-------------------------------------------T--GGA---G---GAGGAGGAGGA...........18200.0510100000000
droPer2
TTTTTCTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTTT--TT----GTG-------------------------TG----TGTGTGT-------GTGTTG---------G------------------------------------------------------------------T-TTT-------------GTCG--ACTAC----TTTGCG----------------------TC--TCCTTCTTCGT--C--------------GTC-------------------------------------GT-------------C-GTCA--------------------------------ACG-------TCGCTGCG---GTCGTTGATACAA--A-AAGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................TTT-------------GTCG--ACTAC----TTTGCG----------------------TC--TCCT................................................................................................................................................................2412.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................TTT-------------GTCG--ACTAC----TTTGCG----------------------TC--TCCG................................................................................................................................................................2411.001100000
droWil2
AATATATATATGTATA------TATATATAC-----------------------------------------ATATA---TCTTCCTATTATTATGGTGGA-----------TGCTTTA---------------GTTTTC------TTCTATTTAA-----ATTTTT-GTTT------------------------------------------------------ATTTTTTTTATTTGTTTTTTT-----------------------------------G-TTTTTTTTTTTTT---------TTGT-----------------------------------------------------TTTA----------------------------------T----TTTGTGTTTGCTTTTCGAACAAATAAAATG--TTTGGCCTTTTTTC------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AATTTATTTATTTATTGCTTTA---TTA---------------------------------------------TTT---------------------TTGGTCTTTTATTATTACTTTT-------------------------------ATTT-------AATTTT-GTTTAG-TT---------ATTTATATTCGTTTTTTT-----------TTTTAT-----TT--------------------------TTT------TTTTTTATTA----TTTA----------------------------------------------------------------------------------TGTT---TAG-----TTGTTGAGTATATTCTTATTCATA----TTGGAC----------------------TA--TTTTTTTTTTTTTT--------------TTT-T---TT------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................TAT-----TT--------------------------TTT------TTTTTTATTA----T....................................................................................................................................................................................................................................................................................................................................19160.315000000000000000000000000000010400000000000000000000000000000000
.......................................................................................................................................................................................................TTTTT-----------TTTTAT-----TT--------------------------TTT------TTTTT..............................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AATATTTTTGGTAATTTTTTTTTTTTTTTTTCAGATTAAGATATGTGGACCCCCAATGGCAATCAGGTAAGTATATATGAAATTATTA-----------------------TTATTATTTTTTTTTTTTCCATATTTATTGGCAGCA------TATATTATTATTTTT-----------TTCAGCTATTTTCTTTTTCAGATTT---AACTTTTT-------TTTTTTTTTTTTT----------TGATTTTTTTTTTTTTTTTTTTTTAGCT----ATTTTAT-------CTTTTT--------------------------------------------------------TA-A------CA------TTTTATT-------------GGCA--ACTAG----TTATTA----------------------TT--TTTTAAG----------CCTCT----------T---TTAGCATT---------TTT-------------------------------------------------------------------------------------------------------TAGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................CAGGTAAGTATATATGAAATTATTA-----------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.331100000
droGri2
GACACTTTTAGC------TGACTTTGTAGCC-----------------------------------------ATTTT---GCTTGCTAT--------------------CTCTATCGCT---TCCTAGC-T-----------------------------CTGTCTCT-----------CTCACTCACTCCCACTCTCGCTCTC-----------TCTCTCT---CTC----------------------------T------C--------------------------------T---------CTCTCTGTATCTGTTCGTGTTCTGTGTGTGTTCATTTCCGTTTCCGTTG-C------CA------------------------------------T----T-------------------------------------------------------------------------------------GA-AA--TTATGTTGTTG-G--CTG----TCT----------------------------------TTGTGTTTAGCTGCTTGCG-------------GT---TCTTAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:14 PM