ID:

dsi_14394

 Coordinate:

2l:16033504-16033720 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.1 -7.0 -6.8

Flybase annnotation

exon [2l_16033721_16033958_-]; CDS [2l_16033721_16033958_-]; exon [2l_16033310_16033503_-]; CDS [2l_16033310_16033503_-]; intron [2l_16033504_16033720_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGATCCTCAGCCGCCTCACTGGCCGCCCACGATGAGGATAACACAAAAAGGTATGTGGAATAGCCATTAGCAATACGCTCATAAAGATCATAGTGTATCAATGGGGAGTCCTTAAATGGTTATTGCCACTTTAGGTTTTAAATGGGGAAATGATTTGTTACTGTTTGTGTTTTCCATTTTGGAAAAGATTCTGAAGAATGTGGTATTATTTATTAATTTATTAATTAATTATTTATAAACATTTTCCATTTCTTTGTTTCCATCCAGATGCGGCAGTCGCGATCGGGACGAGCGACCGCCCAGCGGATCAGCAGCCT
**********************************************************************************************************************************************************......((....((.(((((((...))))))).)).....)).......****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................................................................AGTCGCGATCGGGACGAGCGA...................... 21 0 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................................................................................................AAAAGATTCTGAAGAATGTGG.................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0
..........................................................................................................................................................TTGTTACTGTTTGTGT................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................AATGGAGAAATGATTTGTTACT........................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................AAGGTATGTGGAATAGCCATT......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TATCAATGGGGAGTCCTTAAATGGT..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GACGAGCGACCGCCCAGCGGATCAG...... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CGGCAGTCGCGATCGGGACGA.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................ATCATAGTGTATCAATGGGGA.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................AGGTTTTAAATGGGGAAATGA.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................GAAAAGATTCTGAAGAATGTG................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................GTGTTTTCCATTTTGGAAAAG.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................ATAGTGTATCAATGGGGAGTC............................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GTCGCGATCGGGACGAGCGAC..................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AAAGATTCTGAAGAATGT.................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTCTGAAGAATGTGGTATTATT........................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................AAAAGATGCGGCAGTCGCGATCGGGA............................. 26 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTCTGAAGAATGTGGTATTATTTAT........................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................TTGGAAAAGATTCTGAAGAAT...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............TAACTGGCCGCCCACGATGAG......................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................ATGGTTATTGCCACTTTAG....................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................ACGAGCGACCGCCCAGCGGAT......... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................TGTTTGTGTTTTCCATTTTGGAAAAGA................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................ATCATAGTGTATCAATG...................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
..............................................AAAGGCATGTGGAACAGACATTA........................................................................................................................................................................................................................................................ 23 3 3 0.33 1 0 0 0 0 1 0 0
.........................................................................................................................................................TTTGTTACTGATTGTGCTGTC............................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................AGGGATCGGGACGAGCGAAC.................... 20 3 6 0.17 1 0 0 0 1 0 0 0
................................................AGGAATGTGGAATTGCCAGT......................................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0
...........................................................................................................................................................CGTTACTGTTTGTGT................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................TCGCGATAGGGACGGG......................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

GCTAGGAGTCGGCGGAGTGACCGGCGGGTGCTACTCCTATTGTGTTTTTCCATACACCTTATCGGTAATCGTTATGCGAGTATTTCTAGTATCACATAGTTACCCCTCAGGAATTTACCAATAACGGTGAAATCCAAAATTTACCCCTTTACTAAACAATGACAAACACAAAAGGTAAAACCTTTTCTAAGACTTCTTACACCATAATAAATAATTAAATAATTAATTAATAAATATTTGTAAAAGGTAAAGAAACAAAGGTAGGTCTACGCCGTCAGCGCTAGCCCTGCTCGCTGGCGGGTCGCCTAGTCGTCGGA
******************************************************************************************************************......((....((.(((((((...))))))).)).....)).......********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body
..................................................................................................................................................................................................................................................................................TCAGCGCTAGCCCTGCTCGCT...................... 21 0 1 4.00 4 0 4 0 0 0
.............................................................TCGGTAATCGTTATGCGAGTA........................................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGCTGGCGGGTCGCCTAGTCG..... 21 0 1 2.00 2 2 0 0 0 0
.............................................................................................................................................................................................................................................TTGTAAAAGGTAAAGAAACAA........................................................... 21 0 1 2.00 2 1 0 1 0 0
.....................................................................................................................................................................................................................................................................................................CTGGCGGGTCGCCTAGTCGTC... 21 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................................................................................................................................................TAGCCCTGCTCGCTGGCGGGTCGCCT.......... 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................AAGGTAAAGAAACAAAGGTAG..................................................... 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................GCGGGTCGCCTAGTCGT.... 17 0 1 1.00 1 1 0 0 0 0
..................GACCGGCGGGTGCTACTCCTA...................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...............................................................................GTATTTCTAGTATCACATAGTTA....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0
.CTAGGAGTCGGCGGAGT........................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0
.........................................................................ATGCGAGTATTTCTAGTATCACATAGT......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............................................................CGGTAATCGTTATGGGAGTATTTCT...................................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GGCGGGTCGCCTAGTCGTCGG. 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................AGGTAAAACCTTTTCTAAGACTTCT........................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0
....................................................................TCGTTATGCGAGTATTTCTA..................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................TGCTCGCTGGCGGGTCGCCTA......... 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................TACGCCGTCAGCGCTAGCCCT............................. 21 0 1 1.00 1 0 1 0 0 0
........................................................................TATGCGAGTATTTCTAGTATCACATAG.......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............................................................CGGTAATCGTTATGCGAGTAT.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........CGGCGGAGTGACCGGCGGGT................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................GACGCCGTCAGCGCTAGCCCT............................. 21 1 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................GAAACAAAGGTAGGTCTACGC............................................. 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................AAGGTAAAGAAACAAAGGTAGGTCTAC............................................... 27 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................................AGGTAAAGAAACAAAGGTAGGTCTAC............................................... 26 0 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................GCTGGCGGGTCGCCTAGTCGT.... 21 0 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................................................................................................AGGAAAAGACACAAACGTAGGT................................................... 22 3 4 0.25 1 0 0 0 1 0
...................ACAGGCGTGTGCTACTC......................................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................TAGCGGGTCGGCTAGTCG..... 18 2 10 0.10 1 0 0 0 0 1
.............................................................................................................................................................................................................................................TAGTAAAAGGTAAAGA................................................................ 16 1 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:16033454-16033770 - dsi_14394 CGAT-----------------------------------------------------------------------------------CCTCAGCCGCCTCACTGGCCGCCCACGATGAGGATAACACAAAAAGGTATGTGGAAT-AGCCATTAGCAATAC----------------GCTCATAAAGATCATAGTGTA-TCAATG------------------------------------------GGGAGTCCTTAAATGGTTATTG-----CCA-------------------------------------------------------------------------------------------------------CTTTAGGTTTTAAATGGGGAAATGATTTGTTACTGTTTGTGTTTTCCATTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAATGTGGTATTATT----------------------------------------------TATTAATTTATTAATTAATT--------------------------------------------------------------ATTTATAAACAT-TT-------TCCATTTCTTTGTTTC--CATCCAGATGCGGCAGTCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCAGCCT
droSec2 scaffold_7:114330-114646 - CGAT-----------------------------------------------------------------------------------CCTCAGCTGCCTCACTGGCCGCCCACGACGAGGATAACACAAAAAGGTATGTGGAAT-ATCCATTAGCAATAT----------------GCTCATAAAGATCATAGTGTA-TCAATG------------------------------------------GGGAGTCCTTAAATGGTTATTG-----CCA-------------------------------------------------------------------------------------------------------CTTTAGGTTTTAAATGGGGAAATGAATTGTTACTGTTTGTGTTTTCCATTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAATGTGGTATTATT----------------------------------------------TATTAATTTATTAATTAATT--------------------------------------------------------------ATTTATAAACAT-TT-------TCCATTTCTTTGTTTC--CATCCAGATGCGGCAGTCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCAGCCT
dm3 chr2L:16468197-16468542 - CGAT-----------------------------------------------------------------------------------CATCAGCCGCCTCACTGGCCGCCCACGACGAGGACAACACAAAAAGGTATGTGGAATTATGCATTAACAATAC----------------GTTCATAATGATCATGGTGTA-TCAATG------------------------------------------GGGTGTCCTTAAATGGTTATTGCTGTGCCA-------------------------------------------------------------------------------------------------------CTTTAGGTTTTAAATGGGGGAATGAATCGTTACTGTTTGTGTTCTTAATTTTTGT---------------------ATCTTATTACAT--------------------------TTATTTAG------------------------C----------------------------------------------------------------------------------------------------------------------------------------------TTTGAAAGATACTGAAAAAT--------------------------------------------------------------------------------------------------------------CAGTGTAATTATTCATTTATTAATTCATATGCTATAAAAAT-TT-------TCCATTTCTTTGTTTC--CACCCAGATGCGGCAGTCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCAGCCT
droEre2 scaffold_4845:19535158-19535396 - CGAT-----------------------------------------------------------------------------------CCTCAGCCGCCTCACTGGCCGCCCACGACGAGGACAACTCAAAAAGGTATGTGGAGT-ATCCATTATCCAACT----------------CCTCAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCT-----------------------------------------TTTTGT---------------------ATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAA---------------------T-ATGCATTTAGCTGTGCAAGATATTTTAGAAA-----------------TGCATAGATAATACTCGATAAACAT-TT-------TGCACTTACTTATGTT--TACCCAGATGCGGCAGCCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCTGCCT
droYak3 2R:2926527-2926804 - CGAT-----------------------------------------------------------------------------------CCTCAGCCGCCTCACTGGCCGCCCACGACGAGGATAACTCAAAAAGGTATGTGGAAT-CTCCATTATCAAAGC----------------GTTCGCAAAGTTCATAGTGCA-TCAATG------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------AGAATGG----------------CCAATTTTGA--------------------AAACATAA-AAAT--------------------------TCCATTAC------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAAGGATATTTTATAAATCAT--ATATTATTCAATGAATAGGTAGCACTTTACAATAATATTTGCATT------TTCTA--TGTT--TTCCCAGATGCGGCAGTCGCGATCGGGATGA------GAGACCGCCCAGCGGATC---AGCAGCCT
droEug1 scf7180000408961:44367-44612 - CGTT-----------------------------------------------------------------------------------CTTCAGCTGCCTCATTGGCCGCCCACGACGAGGATAATATTAAAAGGTATTTTAAAG-ATTCATT------------------------------------------------TTTG---------GTTAAAATAGGTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGT--------------------TAATAAAT-AAATAAATTTGTGGATTCGTTTTTTCTAGTTTCATTAT------------------------TTTATTCAAAACTTTTCACAATTGTGTCTTCATAATTTTT------------------------------------------------------------------------------------------------G-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT---TTTT--TTTTCAGAAGCGGTAGTCGCGAACGTGATGA------GCGACCGCCCAGCGGATC---TGCAGTCT
droBia1 scf7180000301468:596231-596632 - CGGT-----------------------------------------------------------------------------------CCTCAGCCGCC---------------GATGAGGATAACTCTAAAAGGTATTTTATAG-ATACAATACTCACTA----------------CCTCAAAAATATCTTTTTTTA-TCCAGCTGAGTTTAGAAGTAAATGAGTTATTTATGTTCCTAGTTAGTAGCTGGTCCTTAGACCACTAACGCAGAGCTT-----------------------------------------------------ATAATTCTCATA----GAAGGGTT--------------------------------------------GGGAATAGCCGGA-------------ACCATGCTATAAAATATTCCTTACAAACATATATTAAAA-ATAT---------------TATTTTCTAGTT--------------------------------------------------------ATTTTATACCCTACT----------------------------TTAACGGGC----------------------------------------------------------T--------------------------------------GCATTTAAGAGCATTAATTTGTTTTTATAACTGGTTATGCATAA---------------------T--------------------------------------------------------------ATTTATAT--------GTATTTTTTATTTCA---TTTT--TTTCCAGGTGTGGCAGTCGCGATCGAGATGA------GAGACCGCCCAGTGGATC---TGCGGCTT
droTak1 scf7180000415914:132733-132822 - TTAC----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATAT--------TTATTTTGTATTTAA---TTTA--TTTACAGGTGTGGCAGTCGCGATCGGGATGA------GCGACCGCCCAGCGGATC---AGCAGCTT
droEle1 scf7180000490579:885915-886336 + CGGT-----------------------------------------------------------------------------------CCTCCGCCGCCTCATTGGCCACCCACGACGAAGATAACTCTAAAAGGTATTTGAAAC-TTTCACTAATCACTTCTTATTTCGTAGTATTTTTCCTGAAGTCCATGCTGCGGTCC----------------------------------------------------------------ATGCTGTTCTGAAAAAATTTATTGTTTCGATGTTTTTTAATTGATTTGTATATATAGTAATCTGTTATTTCACAAT----TGTGGTTTTACTGTAGTTGTTTTAACAAATATACCTATATTTTTGGAATTGGTGCAAGGCTTG----------------CCG-------------------------------AACA-GT-----------------------------------------------------------T------------TGCTTTCTTTTTTGTTTTATATAATATT------------------------------------------------------------------------------------------------GT------------------------------------TAAGCGTATAACAATAACTTATTTTCATATCAGCTTCTATGTAATT--------------------A-----------------------------------------------------------------ATTT---------GATTATATATTTTT---GTTT--TTTACAGGTGCGGTAGTCGCGACCGGGACGA------TCGGCCGCCCAGCGGATC---AGCTGCCT
droRho1 scf7180000772118:822-1178 + CGAT-----------------------------------------------------------------------------------CCTCCGCCGCATCCTTGGCCGCCCACGACGAGGATAACTCTAAAAGGTATTTGAACT-TT---------------------------------ATTTATATTTATATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGTGATAAATGATTGAATTTCCTTACAT------------GGAATTCTAGACGATTTGGTGAAGTT--TTATTTATTTATTTATTATTGCTTAGTTTTAATTGCCTAAAATTATTGCATGCCAAAACCAGATATTTATACCAAGAATAATCATTTCTCTATACTGT------------------------------------TAATTGTATAACAATAGTTAATTTTCAAAGCACCTTTTGTATAATT--------------------A-----------------------------------------------------------------ATAT--------TTTTTT------TGT---AATT--ATTACAGATGCGGTAGTCGCGATCGGGACGA------ACGGCCGCCCAGCGGATC---AGCTGCCT
droFic1 scf7180000454078:406827-407158 - CGCT-----------------------------------------------------------------------------------CCTCCGCCGCGTCCTTTGGAGCCCACGACGAGGACAACGCAAAAAGGTATTTAACAC-GACTTTT-----------------------------------------TATA-T--------------AAGTAACCCAGTTT------------------------------------------------T-----------------------------------------------------ATAATTACAATATTAAGAA------------------------------------------------------------------------------------AGAAATATTTGGTACATACATTTATAACA----------------------ATTTTCAAGCTTCGTTAGAAAAATGTATA-AGTTCTTTAAGT------------TGCTTTCTGTTCTGTTTTCTTAACTATT------------------------------------------------------------------------------------------------G-TTCGCTTAAAACAAT-------------------------------------------------------------------TGTAAATTTTGCATTTCATTA---------------------------------------------------AT--AT----ATCAATTT--------GTATTTTCTATTTAA---TTTATTTTAAAAGGTGTGGCAGTCGCGATCGGGATGA------GCGGCCACCCAGCGGATC---TGCCGCAA
droKik1 scf7180000302469:402543-402615 + TTGACAAATAAT---------------------------------------------------------------------------TCCAACTTCCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGGCTGCGGCGGCAGCGGCAGCGACGT--------CAACGCCCG------C---AGCGGCCG
droAna3 scaffold_12916:16083892-16083942 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGGAAGTCGCGAGCGGGACGA------GCGACCGCCAAGTGGATC---TGCCGCAT
droBip1 scf7180000396717:321406-321459 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGGCAGTCGCGAGCGGGACGA------GCGGCCTCCAAGTGGATCGGCCACAGCAT
dp5 Unknown_group_304:3699-3751 - TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAAGGGGATC---AGCAGCAG
droPer2 scaffold_122:4018-4070 + TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GACGACAACGC------GCG-CGGCCAAGGGGATC---AGCAGCCG
droWil2 scf2_1100000004585:4687043-4687110 - CCAT-----------------------------------------------------------------------------------CAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCGACAGTCGCGAACATGACGATGCAGTCCGACCACCAAGTGCTGCTGCTGTTGCCG
droVir3 scaffold_12875:5232412-5232463 - TATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAATTTATTAAATTATT--------------------------------------------------------------ATTATTCAACTT-TT--TATT-------TTT---TATT--TT---------------------------------------------------------------T
droMoj3 scaffold_6500:24803209-24803335 + TATT----TCATTCTAATT---TATTCAGTTGTGCATACA--------------------------------------------------TATTTTCGTTACGGGTTGCCT-CAGCGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTC--CTTCTGGC-TGGCTCGGTTCGTTTGGTTCAA------ACTATCGCTTGACTG--C---AGCAGCAA
droGri2 scaffold_15081:948480-948608 + ACTA-----TAAACTAATTAACTAATTAACTGCATTTACTTATCTCTTTTATAATTTCTTTTTGTATTTGCAGCCAAGCATTGCCAAAACCACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACACAGCCAA------AGCAGCAGCAGCAGCAGC---AGCAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGAT-----------------------------------------------------------------------------------CCTCAGCCGCCTCACTGGCCGCCCACGATGAGGATAACACAAAAAGGTATGTGGAAT-AGCCATTAGCAATAC----------------GCTCATAAAGATCATAGTGTA-TCAATG------------------------------------------GGGAGTCCTTAAATGGTTATTG-----CCA-------------------------------------------------------------------------------------------------------CTTTAGGTTTTAAATGGGGAAATGATTTGTTACTGTTTGTGTTTTCCATTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAATGTGGTATTATT----------------------------------------------TATTAATTTATTAATTAATT--------------------------------------------------------------ATTTATAAACAT-TT-------TCCATTTCTTTGTTTC--CATCCAGATGCGGCAGTCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCAGCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCGATCGGGACGA------GCGA.........................2113.00300000000003000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAATGTGG.................................................................................................................................................................................................................................................2112.00200010000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACTGTTTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..................................................................................................................................AAGGTATGTGGAAT-AGCCATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...................................................................................................................................................................................................TA-TCAATG------------------------------------------GGGAGTCCTTAAATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGA------GCGACCGCCCAGCGGATC---AG......2511.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGTCGCGATCGGGACGA------.............................2111.00100000000001000000
..........................................................................................................................................................................................ATCATAGTGTA-TCAATG------------------------------------------GGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTAAATGGGGAAATGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAATGTG..................................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTCCATTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG.................................................................................................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................................................ATAGTGTA-TCAATG------------------------------------------GGGAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGATCGGGACGA------GCGAC........................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTCTGAAGAATGT...................................................................................................................................................................................................................................................1811.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAGAATGTGGTATTATT----------------------------------------------............................................................................................................................................................................................2211.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAGAATGTGGTATTATT----------------------------------------------TAT.........................................................................................................................................................................................2511.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAAT.....................................................................................................................................................................................................................................................2111.00100000000001000000
..................................................................................................................................................................................................................................................................ATGGTTATTG-----CCA-------------------------------------------------------------------------------------------------------CTTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA------GCGACCGCCCAGCGGAT............2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGTGTTTTCCATTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGA................................................................................................................................................................................................................................................................2711.00100000000001000000
..........................................................................................................................................................................................ATCATAGTGTA-TCAATG------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
droSec2
CGAT-----------------------------------------------------------------------------------CCTCAGCTGCCTCACTGGCCGCCCACGACGAGGATAACACAAAAAGGTATGTGGAAT-ATCCATTAGCAATAT----------------GCTCATAAAGATCATAGTGTA-TCAATG------------------------------------------GGGAGTCCTTAAATGGTTATTG-----CCA-------------------------------------------------------------------------------------------------------CTTTAGGTTTTAAATGGGGAAATGAATTGTTACTGTTTGTGTTTTCCATTTTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTCTGAAGAATGTGGTATTATT----------------------------------------------TATTAATTTATTAATTAATT--------------------------------------------------------------ATTTATAAACAT-TT-------TCCATTTCTTTGTTTC--CATCCAGATGCGGCAGTCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCAGCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAGTCGCGATCGGGACGA------GCGACCC......................3011.0010010
dm3
CGAT-----------------------------------------------------------------------------------CATCAGCCGCCTCACTGGCCGCCCACGACGAGGACAACACAAAAAGGTATGTGGAATTATGCATTAACAATAC----------------GTTCATAATGATCATGGTGTA-TCAATG------------------------------------------GGGTGTCCTTAAATGGTTATTGCTGTGCCA-------------------------------------------------------------------------------------------------------CTTTAGGTTTTAAATGGGGGAATGAATCGTTACTGTTTGTGTTCTTAATTTTTGT---------------------ATCTTATTACAT--------------------------TTATTTAG------------------------C----------------------------------------------------------------------------------------------------------------------------------------------TTTGAAAGATACTGAAAAAT--------------------------------------------------------------------------------------------------------------CAGTGTAATTATTCATTTATTAATTCATATGCTATAAAAAT-TT-------TCCATTTCTTTGTTTC--CACCCAGATGCGGCAGTCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCAGCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATCGGGACGA------GCGACCG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
CGAT-----------------------------------------------------------------------------------CCTCAGCCGCCTCACTGGCCGCCCACGACGAGGACAACTCAAAAAGGTATGTGGAGT-ATCCATTATCCAACT----------------CCTCAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCT-----------------------------------------TTTTGT---------------------ATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAA---------------------T-ATGCATTTAGCTGTGCAAGATATTTTAGAAA-----------------TGCATAGATAATACTCGATAAACAT-TT-------TGCACTTACTTATGTT--TACCCAGATGCGGCAGCCGCGATCGGGACGA------GCGACCGCCCAGCGGATC---AGCTGCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGAT-----------------------------------------------------------------------------------CCTCAGCCGCCTCACTGGCCGCCCACGACGAGGATAACTCAAAAAGGTATGTGGAAT-CTCCATTATCAAAGC----------------GTTCGCAAAGTTCATAGTGCA-TCAATG------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------------------AGAATGG----------------CCAATTTTGA--------------------AAACATAA-AAAT--------------------------TCCATTAC------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAAGGATATTTTATAAATCAT--ATATTATTCAATGAATAGGTAGCACTTTACAATAATATTTGCATT------TTCTA--TGTT--TTCCCAGATGCGGCAGTCGCGATCGGGATGA------GAGACCGCCCAGCGGATC---AGCAGCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CGTT-----------------------------------------------------------------------------------CTTCAGCTGCCTCATTGGCCGCCCACGACGAGGATAATATTAAAAGGTATTTTAAAG-ATTCATT------------------------------------------------TTTG---------GTTAAAATAGGTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGT--------------------TAATAAAT-AAATAAATTTGTGGATTCGTTTTTTCTAGTTTCATTAT------------------------TTTATTCAAAACTTTTCACAATTGTGTCTTCATAATTTTT------------------------------------------------------------------------------------------------G-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT---TTTT--TTTTCAGAAGCGGTAGTCGCGAACGTGATGA------GCGACCGCCCAGCGGATC---TGCAGTCTSizeHit CountTotal NormTotal
No Reads
droBia1
CGGT-----------------------------------------------------------------------------------CCTCAGCCGCC---------------GATGAGGATAACTCTAAAAGGTATTTTATAG-ATACAATACTCACTA----------------CCTCAAAAATATCTTTTTTTA-TCCAGCTGAGTTTAGAAGTAAATGAGTTATTTATGTTCCTAGTTAGTAGCTGGTCCTTAGACCACTAACGCAGAGCTT-----------------------------------------------------ATAATTCTCATA----GAAGGGTT--------------------------------------------GGGAATAGCCGGA-------------ACCATGCTATAAAATATTCCTTACAAACATATATTAAAA-ATAT---------------TATTTTCTAGTT--------------------------------------------------------ATTTTATACCCTACT----------------------------TTAACGGGC----------------------------------------------------------T--------------------------------------GCATTTAAGAGCATTAATTTGTTTTTATAACTGGTTATGCATAA---------------------T--------------------------------------------------------------ATTTATAT--------GTATTTTTTATTTCA---TTTT--TTTCCAGGTGTGGCAGTCGCGATCGAGATGA------GAGACCGCCCAGTGGATC---TGCGGCTTSizeHit CountTotal NormTotal
No Reads
droTak1
TTAC----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATAT--------TTATTTTGTATTTAA---TTTA--TTTACAGGTGTGGCAGTCGCGATCGGGATGA------GCGACCGCCCAGCGGATC---AGCAGCTTSizeHit CountTotal NormTotal
No Reads
droEle1
CGGT-----------------------------------------------------------------------------------CCTCCGCCGCCTCATTGGCCACCCACGACGAAGATAACTCTAAAAGGTATTTGAAAC-TTTCACTAATCACTTCTTATTTCGTAGTATTTTTCCTGAAGTCCATGCTGCGGTCC----------------------------------------------------------------ATGCTGTTCTGAAAAAATTTATTGTTTCGATGTTTTTTAATTGATTTGTATATATAGTAATCTGTTATTTCACAAT----TGTGGTTTTACTGTAGTTGTTTTAACAAATATACCTATATTTTTGGAATTGGTGCAAGGCTTG----------------CCG-------------------------------AACA-GT-----------------------------------------------------------T------------TGCTTTCTTTTTTGTTTTATATAATATT------------------------------------------------------------------------------------------------GT------------------------------------TAAGCGTATAACAATAACTTATTTTCATATCAGCTTCTATGTAATT--------------------A-----------------------------------------------------------------ATTT---------GATTATATATTTTT---GTTT--TTTACAGGTGCGGTAGTCGCGACCGGGACGA------TCGGCCGCCCAGCGGATC---AGCTGCCTSizeHit CountTotal NormTotal
No Reads
droRho1
CGAT-----------------------------------------------------------------------------------CCTCCGCCGCATCCTTGGCCGCCCACGACGAGGATAACTCTAAAAGGTATTTGAACT-TT---------------------------------ATTTATATTTATATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGTGATAAATGATTGAATTTCCTTACAT------------GGAATTCTAGACGATTTGGTGAAGTT--TTATTTATTTATTTATTATTGCTTAGTTTTAATTGCCTAAAATTATTGCATGCCAAAACCAGATATTTATACCAAGAATAATCATTTCTCTATACTGT------------------------------------TAATTGTATAACAATAGTTAATTTTCAAAGCACCTTTTGTATAATT--------------------A-----------------------------------------------------------------ATAT--------TTTTTT------TGT---AATT--ATTACAGATGCGGTAGTCGCGATCGGGACGA------ACGGCCGCCCAGCGGATC---AGCTGCCTSizeHit CountTotal NormTotal
No Reads
droFic1
CGCT-----------------------------------------------------------------------------------CCTCCGCCGCGTCCTTTGGAGCCCACGACGAGGACAACGCAAAAAGGTATTTAACAC-GACTTTT-----------------------------------------TATA-T--------------AAGTAACCCAGTTT------------------------------------------------T-----------------------------------------------------ATAATTACAATATTAAGAA------------------------------------------------------------------------------------AGAAATATTTGGTACATACATTTATAACA----------------------ATTTTCAAGCTTCGTTAGAAAAATGTATA-AGTTCTTTAAGT------------TGCTTTCTGTTCTGTTTTCTTAACTATT------------------------------------------------------------------------------------------------G-TTCGCTTAAAACAAT-------------------------------------------------------------------TGTAAATTTTGCATTTCATTA---------------------------------------------------AT--AT----ATCAATTT--------GTATTTTCTATTTAA---TTTATTTTAAAAGGTGTGGCAGTCGCGATCGGGATGA------GCGGCCACCCAGCGGATC---TGCCGCAASizeHit CountTotal NormTotal
No Reads
droKik1
TTGACAAATAAT---------------------------------------------------------------------------TCCAACTTCCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGGCTGCGGCGGCAGCGGCAGCGACGT--------CAACGCCCG------C---AGCGGCCGSizeHit CountTotal NormTotal
No Reads
droAna3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGGAAGTCGCGAGCGGGACGA------GCGACCGCCAAGTGGATC---TGCCGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGGCAGTCGCGAGCGGGACGA------GCGGCCTCCAAGTGGATCGGCCACAGCATSizeHit CountTotal NormTotal
No Reads
dp5
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAAGGGGATC---AGCAGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGAC.....................21121.002102100000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACC....................22118.001801710000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCA...................23110.001001000000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGA......................2017.0070600000100
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAA..................2414.0040100000300
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAAG.................2514.0040400000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAAGG................2614.0040400000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAACGC------GCG-CGACCAAGGG...............2314.0040000000400
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACGC------GCG-CGACCAAGGGGATC---........2613.0030300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAACGC------GCG-CGACCAAGGGG..............2412.0020000000200
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGC------GCG-CGACCAAGGGGA.............2312.0020000001100
.................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACC....................2112.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGC------GCG-CGACCAAGGGGATC---AG......2412.0020000000200
.................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAAG.................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGC------GCG-CGACCAAGGGGATC---........2211.0010000000100
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACA....................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGC------GCG-CGACCAAGGGG..............2111.0010000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACGC------GCG-CGACCAAGG................2111.0010100000000
.................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGA......................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGC------GCG-CGACCAAGGG...............2111.0010100000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAAA.................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGC------GCG-CGACCAAGGGGA.............1911.0010100000000
...............................................................................................GCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACC....................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGC------GCG-CGACCAAGGGGAA............2411.0010100000000
..............................................................................................CGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGA......................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGGGGATC---AGCAGC..1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC------GCG-CGACCAAGGGGATC---AGC.....2311.0010100000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CGACCAC..................2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACGC------GCG-CGACCAAGA................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC------GCG-CGACCAAGGGGATC---........2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACGC------GCG-CGACCAAGGGG..............2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGC------GCG-CGACCAAGGGG..............2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGC------GCG-CGACCAAGGGGATC---........2511.0010001000000
................................................................................................CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------GCG-CG.......................1930.6720200000000
.........................................................................................TCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACG....................................2040.5020200000000
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACG....................................2740.2510100000000
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGAC........................................2340.2510100000000
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------.............................2840.2510100000000
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAAC.....................................2640.2510100000000
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATG..........................................2140.2510100000000
.........................................................................................TCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------.............................2140.2510100000000
..........................................................................................CGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------.............................2040.2510000100000
...........................................................................................GGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGT------.............................1940.2510100000000
.........................................................................................TCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------G............................2240.2510100000000
..CA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GATGACAACGC------.............................2640.2510000000100
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GAA...........................................2050.2010100000000
droPer2
TCCA----------------------------------------------------------------------------------GAGTCGGCCGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GACGACAACGC------GCG-CGGCCAAGGGGATC---AGCAGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GACGACAACGC------GCG-CGG......................1870.141010000
...............................................................................................GCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GACGACAACGC------GCG-CGGCCAAGG................2770.141010000
droWil2
CCAT-----------------------------------------------------------------------------------CAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCGACAGTCGCGAACATGACGATGCAGTCCGACCACCAAGTGCTGCTGCTGTTGCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAATTTATTAAATTATT--------------------------------------------------------------ATTATTCAACTT-TT--TATT-------TTT---TATT--TT---------------------------------------------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TATT----TCATTCTAATT---TATTCAGTTGTGCATACA--------------------------------------------------TATTTTCGTTACGGGTTGCCT-CAGCGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTC--CTTCTGGC-TGGCTCGGTTCGTTTGGTTCAA------ACTATCGCTTGACTG--C---AGCAGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACTA-----TAAACTAATTAACTAATTAACTGCATTTACTTATCTCTTTTATAATTTCTTTTTGTATTTGCAGCCAAGCATTGCCAAAACCACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACACAGCCAA------AGCAGCAGCAGCAGCAGC---AGCAGCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:44 PM