ID:

dsi_14379

 Coordinate:

3l:7849835-7849984 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGAGTGGCTGCTTTTCGGGCGTCGCAGCCGAAACTTTTGGGCTAAAAGCAAATGTAACTAATTGAAAAAGTTTTAAGCACAAACAAACAAGGCAAAAAAGATGTGTTGAAAGGGAGTTTCAAACTTTTGTTTGCTCCTTTCGCTCGTGTCGCTATAAAATTGGTTTCCACCTTAACTCATCTCTTCGAATCGATCAATAGCTATGTGATAACGGAGCTGCTGCAATCGGATCTGCACAAGATAATCGTGT
**************************************************.............((((.(((((((((((((......(((.(((.......))).))).(((((((...(((((....))))))))))))......))).))).)))))))..)))).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................................................................................TAACGGAGCTGCTGCAATCGGATC.................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATCGGATCTGCACAAGATAATC.... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................CTATGTGATAACGGAGCT................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTATGTGATAACGGAGCTGCTGCAAT........................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGATAACGGAGCTGCTGCAATCGGATC.................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................AAAGCTGTGTTGAGAGGGA....................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGCAATCGGATCTGCACAAGAT........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................TGAGTCGCAGCCGAAACGTTT.................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................AGGTGTTGAAAGAGCGTTTCA................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................TCCTTTCGCTCGTGCC.................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.........................AGCCAAAGCTTTTGGGCT............................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................AATCTACGTGATAACGGA................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................AAAAGCTGGGTTGAGAGGG........................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACTCACCGACGAAAAGCCCGCAGCGTCGGCTTTGAAAACCCGATTTTCGTTTACATTGATTAACTTTTTCAAAATTCGTGTTTGTTTGTTCCGTTTTTTCTACACAACTTTCCCTCAAAGTTTGAAAACAAACGAGGAAAGCGAGCACAGCGATATTTTAACCAAAGGTGGAATTGAGTAGAGAAGCTTAGCTAGTTATCGATACACTATTGCCTCGACGACGTTAGCCTAGACGTGTTCTATTAGCACA
**************************************************.............((((.(((((((((((((......(((.(((.......))).))).(((((((...(((((....))))))))))))......))).))).)))))))..)))).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.................................................................................................................................................................................GTAGAGGATCTTAGCTTGT...................................................... 19 3 15 0.27 4 4 0 0
.................................................................................................................................................................................GTAGAGAATCCTAGCTGGTT..................................................... 20 3 4 0.25 1 1 0 0
.............................................................................................................................................................................TTAAGTATAGAAGCTTAG........................................................... 18 2 9 0.11 1 0 1 0
...........AAAGGCCCGCATCGTCGGCG........................................................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0
...........................................................................................................................................................................................................AGACTATTGCCTCGA................................ 15 1 15 0.07 1 0 0 1

Generated: 04/24/2015 at 10:30 AM