ID:

dsi_14363

 Coordinate:

3r:10102026-10102175 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10102176_10102238_-]; exon [3r_10102176_10102238_-]; intron [3r_10100163_10102175_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTAGATACGATACAAAAAACGCCAATCTGCGCACCAAAAAGTGGCCCAAATGCAAAGCGGGAGCTTCCCAGCCCGAAATCCATGCGAATTGGGTGTCCAAACCAGCGAATATATAATTATCTTTTGTTGTTGTTCTTCATTTTGTTGTTTTTTTTTTAACTTAATACCGATGAATTAAGGGATATTCGATGCAATTCCCC
**************************************************...........((((((..(((......)))(((......)))((((((.((((...((((..........)))).......))))..))))))........(((((((.(((....)))..)))))))..........)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.......GTACAAGAACCAGATCAAGACCCT........................................................................................................................................................................................................................... 24 0 1 12.00 12 12 0 0 0 0 0
.......GTACAAGAACCAGATCAAGACCCTCA......................................................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
...............................CAACACCCGTCTAAAGGAGGCTGA................................................................................................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...AGGAGTACAAGAACCAGATCAAGAC.............................................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
.......GTACAAGAACCAGATCAAGACCCC........................................................................................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.......GTACAAGAACCACATCAAGACCCT........................................................................................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.......GTACAAGAACCAGATCAA................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0
.......GTACAAGAACCAGATCAAGACCCTC.......................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
................................AACACCCGTCTAAAGGAGGCTG.................................................................................................................................................................................................... 22 2 1 2.00 2 0 0 2 0 0 0
.....................TCAAGACCCTCAACACCC................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0
.......GTACAAGAACCAGATCAAGACCCTCAAC....................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
...............................CAACACCCGTCTAAAGGAGGCTGAG.................................................................................................................................................................................................. 25 3 1 2.00 2 1 1 0 0 0 0
.................................ACACCCGTCTAAAGGAGGCTGA................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......GTACAAGAACCAGATCAAGACCCG........................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...........................CCCTCAACACCCGTCTAAAGGAGGCTGA................................................................................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0
.GGAGGAGTACAAGAACCAGATCAAGAC.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
................................AACACCCGTCTAAAGGAGGCTGA................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................CACCCGTCTAAAGGAGGCTGA................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................GTTGTTCTTCATTTTGTTGTTTTTTT.............................................. 26 0 1 1.00 1 0 0 0 1 0 0
.............GAACCAGATCAAGACCCTCAACACCC................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........CAAGAACCAGATCAAGACCCT........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........ACAAGAACCAGATCAAGACCCTCA......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
............AGAACCAGATCAAGACCCT........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.............................CTCAACACCCGTCTAAAGGAGGCT..................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..........CAAGAACCAGATCAAGAC.............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
.......GTACAAGAACCAGATCAAGACCC............................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
.............................CTCAACACCCGTCTAAAGGAGGCTGA................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
..................................CACCCGTCTAAAGGAGGCT..................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0
..........CAAGAACCAGATCAAGACCCTCAA........................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................AATTAGGGGATCTTCGAT.......... 18 2 3 0.33 1 0 1 0 0 0 0
.........................................................................................................................................................................TCTTCTGTTGTTGTTATTAATTTT......................................................... 24 3 5 0.20 1 0 0 0 0 1 0
...........................CCCTCAAGACCCGTTTAGA............................................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 0 1

Anti-sense strand reads

TCCTCCTCATGTTCTTGGTCTAGTTCTGGGAGTTGTGGGCAGATTTCCTCCATCTATGCTATGTTTTTTGCGGTTAGACGCGTGGTTTTTCACCGGGTTTACGTTTCGCCCTCGAAGGGTCGGGCTTTAGGTACGCTTAACCCACAGGTTTGGTCGCTTATATATTAATAGAAAACAACAACAAGAAGTAAAACAACAAAAAAAAAATTGAATTATGGCTACTTAATTCCCTATAAGCTACGTTAAGGGG
**************************************************...........((((((..(((......)))(((......)))((((((.((((...((((..........)))).......))))..))))))........(((((((.(((....)))..)))))))..........)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 M025
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
......................GTTCTGGGAGTGATGGGCTG................................................................................................................................................................................................................ 20 3 2 8.00 16 8 6 0 2 0 0 0 0 0 0 0
.......................TTCTGGGAGTGATGGGCTG................................................................................................................................................................................................................ 19 3 6 5.17 31 17 9 0 5 0 0 0 0 0 0 0
...........................GGGAGTTCTGGGCAAAT.............................................................................................................................................................................................................. 17 2 4 4.75 19 0 0 19 0 0 0 0 0 0 0 0
.......................TTCCGGGAGTTATGGGCTG................................................................................................................................................................................................................ 19 3 11 3.18 35 14 13 0 7 0 0 0 1 0 0 0
......................GTTCCGGGAGTTATGGGC.................................................................................................................................................................................................................. 18 2 2 2.50 5 1 3 0 1 0 0 0 0 0 0 0
.......................TTCCGGGAGTTATGGGCT................................................................................................................................................................................................................. 18 3 20 2.20 44 3 26 0 15 0 0 0 0 0 0 0
......................GTTCTGGGAGTGATGGGC.................................................................................................................................................................................................................. 18 2 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0
..........................TGGGAGTTCTGGGCAAAT.............................................................................................................................................................................................................. 18 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................TTCCGGGAGTGATGGGCAG................................................................................................................................................................................................................ 19 3 3 1.67 5 4 0 1 0 0 0 0 0 0 0 0
......................GTTCTGGGAGTGATGGGCT................................................................................................................................................................................................................. 19 3 9 1.11 10 6 3 0 0 0 0 1 0 0 0 0
......................GTTCCGGGAGTTATGGGCTG................................................................................................................................................................................................................ 20 3 7 0.86 6 2 3 0 1 0 0 0 0 0 0 0
......................GTTCCGGGAGTTATGGGCT................................................................................................................................................................................................................. 19 3 13 0.85 11 2 6 0 3 0 0 0 0 0 0 0
...........................GGGAGTTCTGGGCAAATCT............................................................................................................................................................................................................ 19 3 10 0.60 6 0 0 6 0 0 0 0 0 0 0 0
...................CTGGTTCCGGGAGTTATGGGC.................................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
......................GTTCCGGGAGTGATGGGCAG................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.......................TTCGGGGAGTTCTGGGCAAAT.............................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.......................TTCCGGGAGTGGTGGGCTG................................................................................................................................................................................................................ 19 3 12 0.25 3 1 1 0 1 0 0 0 0 0 0 0
......................GTTCCGGGAGTGGTGGGCTG................................................................................................................................................................................................................ 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
........................TCCGGGAGTGATGGGCAG................................................................................................................................................................................................................ 18 3 10 0.20 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAACAACGACAAGAAGTAAAC......................................................... 24 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.......................TTCCGGGAGTGATGGGCA................................................................................................................................................................................................................. 18 3 15 0.20 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAAAATTGAATTACGGCTGTTT.......................... 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
...........................GGGAGTTCTGGGCAGA............................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
..........................TGGGAGTTCTGGGCAAA............................................................................................................................................................................................................... 17 2 11 0.18 2 0 0 2 0 0 0 0 0 0 0 0
............................GGAGTTCTGGGCAAAT.............................................................................................................................................................................................................. 16 2 19 0.16 3 0 0 3 0 0 0 0 0 0 0 0
...........................GGGAGTTCTGGGCAAATC............................................................................................................................................................................................................. 18 3 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
......................GTTCCGGGAGTGATGGGCA................................................................................................................................................................................................................. 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.........................ATGGGAGTTCTGGGCAAAT.............................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
......................GTTCCGGGAGTGGTGGGCT................................................................................................................................................................................................................. 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.....................GGTTCTGGGAGTGATGGGC.................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AAAAAAAACTGAATTAT.................................. 17 1 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................AAGATTAAAATATGGCTACT........................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................AGAAAACAACAACAA.................................................................. 15 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................AAAAAAAATTGAGTTAT.................................. 17 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................GAAGTAAAACAACAA................................................... 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
............................GGAGTTCTGGGCAAATCT............................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GGGAAGTAAAACAACAAAA................................................. 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:26 AM