ID:

dsi_14356

 Coordinate:

2r:4120405-4120554 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.5 -29.1 -29.1

Flybase annnotation

five_prime_UTR [2r_4119699_4121162_-]; exon [2r_4119572_4121162_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
ACGCTAAGAATAACACGGATCGGTGAAAAGCGCAGGAAAAGCCAACCAAATGTGTGTCAAAGAGCAGCAGCAGCAAGCAGCAGGTGTAAATGCAGTGTTCTAAAGCGCTGCAATGCTCCGTGCGTGTGTGTGTGTGTGTCGCAAACATATGGCAGCAAATAAATATTAATCGCAGTTGATATTTTCGCCATACTCCGCAGATTGAAGATTCACGCGAAGGCCAAGCCAGGTGTACCAAGTGCGCCAAGCA
******************************************************.........((.(((((((((.((((((((.(((..(((((((((....))))))))).))).)).))).))).))).))).))).)).......***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
......................................................TGTCAAAGAGCAGCAGCA.................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
........AATAACACGGATCGGTGAAAAGCGCAGG...................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0
..............................................................................................................................TGTGTGTGTGTGTCGCAAACATA..................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...CTAAGAATAACACGGATCGGT.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................................................AGATTCACGCGAAGGCCAAGCCA...................... 23 0 1 1.00 1 1 0 0 0 0
...........................................................................AGCAGCAGGTGTAAATGCAGTGTT....................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...CTAAGAATAACACGGATC..................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................................GATTCACCCGAAGGC............................. 15 1 7 0.43 3 0 0 1 0 2
.................GATCGGTCAAAAGCG.......................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 1 0 0
......................GTGGAAAGCGCAGGA..................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGCGATTCTTATTGTGCCTAGCCACTTTTCGCGTCCTTTTCGGTTGGTTTACACACAGTTTCTCGTCGTCGTCGTTCGTCGTCCACATTTACGTCACAAGATTTCGCGACGTTACGAGGCACGCACACACACACACACAGCGTTTGTATACCGTCGTTTATTTATAATTAGCGTCAACTATAAAAGCGGTATGAGGCGTCTAACTTCTAAGTGCGCTTCCGGTTCGGTCCACATGGTTCACGCGGTTCGT
*****************************************************************************************************.........((.(((((((((.((((((((.(((..(((((((((....))))))))).))).)).))).))).))).))).))).)).......****************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
.............................CGCGTCCTTTTCGGTTGGTTT........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................TTCGGCTGGTTTACACACACTAT............................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCGGTTCGGTCCACATGGT............. 19 0 1 1.00 1 0 0 1 0 0 0 0
.......................................TCGGCTGGTTTACACACACTAT............................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
............................................TGGGATACACACAGTTTATCG......................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0
.....................CCACTTGTCGCGTCCTTG................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................ATGAGGTGTCTAAATTCT.......................................... 18 2 4 0.25 1 0 1 0 0 0 0 0
.........................................................................GTTCGTCGTCCTCATTTA............................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................TCCGGCTCGCTCCACAGG............... 18 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4120355-4120604 - dsi_14356 A---------------------------------CG--CTAAGAAT--AACAC--------GGA-----T----CGGT-----------GAAAAGCGC------------AGGAAAAG----------------CCA----ACCAAATGTGTGTCAAA-GAGCAG--CAG----------CAGCAAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTC-CG-----------------------------------------------TGCGTGTGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCAGTTGATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCGAAGGCCAAGC--CAG-----------------------------------------------------------------------------------------------------------------------------------------GTGTACCAAGTGCG-------CCAAGCA
droSec2 scaffold_1:944530-944783 - A---------------------------------CG--CTAAGAAT--AACAC--------GGA-----T----CGGT-----------GAAAAGCGC------------AGGAAAAG----------------CCA----ACCAAATGTGTGTCAAA-GAGCAG--CAG----------CAGCAAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTC-CGTG-------------------------------------------CGTGTGTGTGTGTATGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCAGTTGATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCTAAGGCCAAGC--TAG-----------------------------------------------------------------------------------------------------------------------------------------GTGTACCAAGTGCG-------CCAAGCA
dm3 chr2R:3294483-3294777 - A---------------------------------CGCTCTAAGAAT--ACCAC--------GGA-----T----CGGTGGAAAG-CCGTGAAAAGCGC------------AGGAAAAG----------------CCA----ACCAAATGTGTGTCAAA-GAG----------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTC-CGTG----------------------CGTGTG---------------TGTGTGTATGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCAGTTAATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCGAAGGCCAAGC-CCAGAGTGACTGCGTGTGGGG--------------------A---GTAGGGCCCG-----------------------CC-----------------------------------------------------------AGGTGTACCAAGTGCG-------CCAAGCA
droEre2 scaffold_4929:19300166-19300430 + A---------------------------------CG--CTAAAAAT--AATAC--------GCA-----T----CGGTGGAAAG-CCGTGAAAAGCGC------------AGGAAAAC----------------CCA----TCCAAATGTGTGTCAAA-GAGCAG-------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTG------------------------------------------------------TACGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA-----------A--------TATTAATCGCAGTTGATA------------------TTTTCGCCATAC--TCCGCAGATAG-------------AAG--A-----------------------------------------------------TTTGTGCCTACGCCAAGC--GGG-------------------------AGTGGCAAA-GTAGTAGTAGGGC-CG-------------------------------------------------------------------------------------------CCAAGTGTA-------CCAAGCA
droYak3 2L:15977785-15978057 - A---------------------------------CG--CCAAAAAGAAAATAC--------GGA-----T----CGGTGGAAAG-TCGTGAAAAGCGC------------AGGAAAAC----------------CCA----ACCAAATGTGTGTCAAA-GAGGAG-------------------CAGCAGCAGGTGTAAATG--TAGTGTTCTAAAGCGC----------------TG--CAATCCTG--------------------------------------------------TGCGTGTGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCACTTGATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------CTTATGCTGCCGCCAAGC--AAA-------------------------AGTGTCTAA-GTAGTGGTAGGGTTCG-------------------------------------------------------------------------------------------CAAAGTGTG-------CCAAGCA
droEug1 scf7180000409672:5307277-5307537 - A---------------------------------CG--CCAAAGAT--AATGC--------GAA-----T----CGGTGAAAAAACGGTGAAAAGTTA------------AAGAA-AC----------------GCAG---TCGGAATGTGTGTCAAA-AAG----------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------AG--CAATTCTA-ACTGCT---------------TC-T--GTGTG---------------CGTCTGCGAGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TAATAATCGCAGTTAATA------------------T---------AT--TTCGCAGTTAA-------------AAG--AAAAT-------------T----------------------------------------CTGATGTCCAAGC--CAG-------------------------AATCATCTA--A-----------------------------------------------------------------------------------------------------------AAGTCCCCC-----GTGAGCT
droBia1 scf7180000302292:2852617-2852906 + A---------------------------------CG--CTATAAAT--ACTGT--------GGACGGGAT----CGTTGGAAAA-GCGTGAAATGCGG------------GGGGAACC----------------CCTG---TGGAAATGTGTGTCACCTAAG----------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAAGGC--------------------------GTGCGTGCG---------------TGTGTGTGTGTGTGTGTGTGTCGCA-ACATATGGCAGCCAA--------TA---A-------A--------T---AATCGCAGTTCACA------------------T--TCGCCACCA--TTTGCAGATAG-------------AAC--AAACTTT-TCCTG------------AACA-------------------------TGCCT-------------------------------GCGAAGTAGGCCTCCCCGCTGGA-AGC---------C---------CGAA-----------------------ACCAAACCCGAATCCGAAT--------------------------------------------------------CTGA
droTak1 scf7180000412807:60261-60530 - A---------------------------------CG--CTAAAAAT--AATAC--------GGA-----TC---GGGTGGAAAA-GCGTGAAAACCAG------------AGGAGAAC----------------GCAG---TCGAAATGTGTGTCAAA-A-------------------------AGCAGCAGGTGTAAGTG--CAGTGTTCTAAAGCGC----------------TG--CACTGCTG-ACTG-------------------------------------------CGCGTGTGTGTTTCGTTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TAATAATCGCAGTCAATA------------------T--TCGCCATAC-TTTTGCAGATAA-------------AAG--ACATT-------------T----------------------------------------CCGAGGGCCAAGC--AGG-----------------------AATATGACTTGGAAAGC--TTGAGC-CTGGAACCCG----------------------------------------------------------------------------------------------------AATCCA
droEle1 scf7180000491347:110893-111184 - T---------------------------------CG--CTAAAAAT--AATAC--------GGATCGGAT----CGCTGGAAAT-CAGTGAAAAGCAG------------CGGAAAGC----------------GCAG---TAGAAATGTGTGTCAAA-AAG----------------------CAGCAGCAGGTGTATACG--CAGTGTTCTATAGCGC----------------TG--CAACTCTG-ACTTTCTTTGTCTGTGTGTGT--GTGTGTACGT-------G----TGTGCGTGTGTGTATTTGTGCGTTGCAAACATATGGCTGCAAA--------TA---A-------A--------AAATAATAATAGTAAATA--------------------------ATAC--TTTGCAGATAT-------------GGG--ACACT-------------T----------------------------------------CTGAGTGCCCAGC--CAG-------------------------AATGTCTTA--A-----------------------------------------------------------------------------------------------------------AAGTCAGCCCGGAGAAAGGGA
droRho1 scf7180000770698:31089-31349 - T---------------------------------CG--CCAAAAAT--AATAC--------GGATCGGAT----AGGTGGAAAT-CGGTGAAAAGCAG------------AGGAAAAC----------------GCAG---TCGTAATGTGTGTCAAA-AAGCAG--CAG----------CAG-CAGCAGCAGGTGTATGTG--CAGTGTTCTAAAGCGC----------------TG--CAATTCTG-ACTCCT---------------CG-T--GTGTG---------------TGTGTATGTGTGTGTGTGCGTTGCAAACATATGGCAGCAAA--------TT---A-------A--------TAATAA---------------------------------------TAC--TTCGCAGATAA-------------AGG--ACATT-------------T----------------------------------------CTGAGGAACAAAC--CAG-------------------------AATGCCCTA--A-----------------------------------------------------------------------------------------------------------AAGTAAG-------CCACGAG
droFic1 scf7180000453948:50300-50560 - T---------------------------------CG--CTAAAAAT--AAGAC--------GGA-----TG---CGAAGGAAAA-CTGTGAAAAGTAG------------AGGAAAAC----------------ACAG---TCGAAATGTGTGTCAAA-AGGCAG--CGG--------------CAGCAGCAGGTGTAAGTG--CAGTGCTCTAAAGCGC----------------TG--CAATGCTG-ATTG-------------------------------------------CTC--TCGTGTGTGTGAGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TAATAATCGCAGTTAAT--------------------TTT-GGCA-AC--TCCGCAGAAAT-------------GAGGCAAACT-------------G----------------------------------------CTGAAGGCCAAGC--CAG-------------------------CATGAACTA--AAGA----------------------------------------------------------------------------------------------------------TTGAG-------G-TAGCG
droKik1 scf7180000302670:19563-19864 - C----------------------------------T--CTAAAAAT--AACGC--------CCGT-----GGCTCTGTAGATAC-GCGTGAATAATGGCGAAAAACGCACTTAAA-GC----------------GTAGTTC-TCGAATGTGTGTCAAA-G-------------------------AGCAGCAGGTGCAAGTT--CAGTGTTATAAAGCGC----------------AG--CACTTCTG-CCAGCG---------------TG-T--GTGTGCCTGTCGTTGTGGTGTGTGTATGTGTGTGTGTGTGTCGCAAACATATGGCAAAAAG--------TCGG-ACTG--CTAG------------ATAAAT--GAATA------------------TTT---GCATTC--TCTGCAGAAAA-------------CGGTGGT------------------------------------------------------------ACCGCTCAACGGCAG-------------------------AATGACATAGAGAGTGGTTGG--------------------------------------------------------------------------------------------------AAAACTA-------CAAAACT
droAna3 scaffold_13266:3499063-3499394 - GGTGG------------------------GTTCTTG--CTAAAAAT--AATACCCCATATCGGA-----T----CGGTG-----------AATAATAGCA--AACCGCATTTGAATCCGAATCGGAATCGGAATGGAGCTA-TCGAATGTGTGTCACT-AGAGGGC-CAG--------------CAGCTGCAGGTGCAAGTG--CAGTGCCACAAAAAGC----------------TG-----------------------------------------TG---------------CGTGTGTGTGTGTGTTCGTGTCGCAAACATATGGAAGAAATGTCTAAAGTCTG-GTTG--AAAA------------ATAAAT-------------TCTTATTCCTAAC--TTGGCATTC--TTTGCAGAAGA-------------CAGTGA--CTTTGTCCCGG-----------AACTCCAGTGGAATGA---------AGGCTATCC------------------------------------------------GCCGCC-TTA---------G---------CCAA---AAGAAAAGATAAT-------------------------------------------------------------------CTTC-----------TCCA
droBip1 scf7180000396427:1965669-1966003 - T---------------------------------TG--CTAAAAAT--ATACC-CCATATCGGATCGGTT----CGGTG-----------AATAATAGCA--AACCGCATTTGAAT-C-----------GGAGTGGAGCTATTCGAATGTGTGTCACT-AGAGGGC-CAA--------------AAGCAGCAGGTGCAAGTG--CTG---------------------------------CATTGCTG-CAC--------------------GTGTGTATG---------------TGTGTGTGTGTGTGTTCGTGTCGCAAACATATGGAGAAATG--------TCTGGATAG--AAAAAAAAAA--AGT-A--CA-TTTTGTA---------------AAAT--TATGCATTC--TTTGCAGAACA-------------GTG--T--CT------CGGCCCCACTCCCCAGCACCAGTGGAATGAGAAGAGAAAAGGCTATACGCCTTGCCCAAAT--CAG-------------------------AATCAGAAG----------------------------------------ATA-------------------------------------------------------------------ATATACT-------CCAGCCA
dp5 3:1570259-1570608 - AAAGCGTTGAATGGGCTTGAAAATGCTTTATGCTCG--CTAAAAAT--AATAC--------ACAT-----GGCTCGGTAGA-AT-TTGTGAATAATAT-----ATAGTATATAAGTAC----------------GTAGTTC-TCAAATGTGTGTCAAT-ATGAATA-CCA--------------AAGCAGCAGGTGTAAATG--CAGTGTTATAAAGCGT----------------TG--CAATCTGG-------------------------------------------TGG--ACTGTGTGTGTGTGGGTGTTTCGCAAACATATGGAAAATATATTG--------CATCG--AAA--------TAATAATAAAT-------------GTTTCT------T--CCGTCTT-CCCTTCAAAGATAATCCCACATCACATG-------------------------------------------------------------AT-------------------------------GCGAAGTGCTAAGCGTAGCTGAA-------------------CTTCAATAAATAAAAAAAGAGAACTGTCCAA-----------ATAA-----------------------------------------------CAG-------TCCAACG
droPer2 scaffold_2:1744440-1744789 - AAAGCGTTGAATGGGCTTGAAAATGCTTTATGCTCG--CTAAAAAT--AATAC--------ACAT-----GGCTCGGTAGA-AT-TTGTGAATAATAT-----ATAGTATATAAGTAC----------------GTAGTTC-TCAAATGTGTGTCAAT-ATGAATA-CCA--------------AAGCAGCAGGTGTAAATG--CAGTGTTATAAAGCGT----------------TG--CAATCTGG-------------------------------------------TGG--ACTGTGTGTGTGTGGGTGTTTCGCAAACATATGGAAAATATATTG--------CATCG--AAA--------TAATAATAAAT-------------GTTTCT------T--CCGTCTT-CCCTTCAAAGATAATCCCACATCACATG-------------------------------------------------------------AT-------------------------------GCGAAGTGCTAAGCGTAGCTGAA-------------------CTTCAATAAATAAAAAAAGAGAACTGTCCAA-----------ATAA-----------------------------------------------CAG-------TCCAACG
droWil2 scf2_1100000004513:6220436-6220538 + CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTG---------------TGTGTGTGTTTGTGTGAGCGCTGCAAACATATGGCAAATTA--------TA---AATG--AAA--------TAATAATAAT---T----------GTTG------CATTCTCTCC-TAC--ATTGCAGTCTA-------------AAT--G-----------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:10810876-10811181 - A------------------------------------------------------------------------------------------------------------------------------------------------AATGTGTGTCAAT-ATGTGAGACAGCGACGCGT-CA---AACCAGCAGGTGCAGCTGGCCAGTGTTGTAAAACGAAACGAATACA----TATG--CTATGCTTGTATTTATGTGTTCGCGCGCGC--GTGTGTGTGT-------G----CGTGTGTGTGTGTGTGTGAACAGTGCAAACATATGGCAAAAAA--------TG---ACAG--AAAAAGAAAAACTTCAATAATAATT----------GTTG------CATTCTCTTCGCAG-CCCCGCAGTT---------------------------------------------------------------------------------------------------------------------------------------GC---------C---------TAAC-----------------------AACAACTGCAACTAAGACTTTAAACTGACTGTAATGATGGGATCAAAGCAAACGTAAC-TATGCT-------CCCAGCA
droMoj3 scaffold_6496:16131778-16131964 + A-------------------------------------------AT--AACG-----------------------------------------------------------------C----------------GTAGTTG-CGAAATGTGTGTCAAT-ATGTGAGCCAACGACGCGTTCAAACCAGCAGCAGGTGCAGCTGCCTAGTGTTGTACAACGAATCGAATACATTCATATGCGCTATGTTTGTATTTATGTG--C----------GTGCGAGCGT-------GTTTG--TGTGTGTGTGTGTGTGACCAGTGCAAACATATGGCAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:3916716-3916894 - T---------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------TGTGTGTGTATGTGTGAACAGTGCAAACATATGGAAAAAAA--------TCTA-ACAAACAAAAAGAAA---AATGAGAAGATGAAATAATAATTTTTTTG-TT-CATTC-------TC--TTCGCAGTTCC-------------CAATGT---------------------------------------------------------------------------------------------------------T--------GC---------C---------TTAC-----------------------AACAAAAACTGCTCCGACT-CAAACTAAGTGAAATGACGGGATCAAAGC--------------------------AAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A---------------------------------CG--CTAAGAAT--AACAC--------GGA-----T----CGGT-----------GAAAAGCGC------------AGGAAAAG----------------CCA----ACCAAATGTGTGTCAAA-GAGCAG--CAG----------CAGCAAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTC-CG-----------------------------------------------TGCGTGTGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCAGTTGATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCGAAGGCCAAGC--CAG-----------------------------------------------------------------------------------------------------------------------------------------GTGTACCAAGTGCG-------CCAAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................TGTCAAA-GAGCAG--CAG----------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...........................................AAT--AACAC--------GGA-----T----CGGT-----------GAAAAGCGC------------AGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTCGCAAACATA.........................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
......................................CTAAGAAT--AACAC--------GGA-----T----CGGT-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--A-----------------------------------------------------TTCACGCGAAGGCCAAGC--CA......................................................................................................................................................................2311.00100000000001000000
.........................................................................................................................................................................................AGCAGCAGGTGTAAATG--CAGTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
......................................CTAAGAAT--AACAC--------GGA-----T----C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
A---------------------------------CG--CTAAGAAT--AACAC--------GGA-----T----CGGT-----------GAAAAGCGC------------AGGAAAAG----------------CCA----ACCAAATGTGTGTCAAA-GAGCAG--CAG----------CAGCAAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTC-CGTG-------------------------------------------CGTGTGTGTGTGTATGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCAGTTGATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCTAAGGCCAAGC--TAG-----------------------------------------------------------------------------------------------------------------------------------------GTGTACCAAGTGCG-------CCAAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................GTGTGTGTATGTGTGTCGC................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.............................................................................................................................................................................................GCAGGTGTAAATG--CAGTGTTCTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.............................................................................................................................................................................................................AGTGTTCTAAAGCGC----------------TG--C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................CTAAGAAT--AACAC--------GGA-----T----CGGT-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................................CG--CTAAGAAT--AACAC--------GGA-----T----CGGT-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...............................................................................................................................................CAAATGTGTGTCAAA-GAGCAG--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................TC-CGTG-------------------------------------------CGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................1820.5010010
dm3
A---------------------------------CGCTCTAAGAAT--ACCAC--------GGA-----T----CGGTGGAAAG-CCGTGAAAAGCGC------------AGGAAAAG----------------CCA----ACCAAATGTGTGTCAAA-GAG----------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTC-CGTG----------------------CGTGTG---------------TGTGTGTATGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCAGTTAATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCGAAGGCCAAGC-CCAGAGTGACTGCGTGTGGGG--------------------A---GTAGGGCCCG-----------------------CC-----------------------------------------------------------AGGTGTACCAAGTGCG-------CCAAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-----------------------CC-----------------------------------------------------------AGGTGTACCAAGTGCG-------CC.....2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGACTGCGTGTGGGG--------------------A---GTAG........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................GTGAAAAGCGC------------AGGAAAAG----------------CCA----ACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATGTGTGTGTGTGTCGC................................................................................................................................................................................................................................................................................................................................................................................1931.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGG--------------------A---GTAGGGCCCG-----------------------CC-----------------------------------------------------------..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GCTC-CGTG----------------------CGTGTG---------------TGTG....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGATTG-------------AAG--A-----------------------------------------------------TTCACGCGAAGGC...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGAAT--ACCAC--------GGA-----T----CGGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TGTGTGTCAAA-GAG----------------------CAGCAGCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCG-----------------------CC-----------------------------------------------------------AGGTGTACCAAGTG................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAAATGTGTGTCAAA-GAG----------------------CAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................GGTGTAAATG--CAGTGTTCTAAAGCGC----------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGTCAAA-GAG----------------------CAGCAGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CGTG----------------------CGTGTG---------------TGTGTGTATGT.............................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..........................................................................................................................................................................................................................................................GTG----------------------CGTGTG---------------TGTGTGTATGTGT...........................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TGTGTGTATGTGTGTGTGTGTC..................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droEre2
A---------------------------------CG--CTAAAAAT--AATAC--------GCA-----T----CGGTGGAAAG-CCGTGAAAAGCGC------------AGGAAAAC----------------CCA----TCCAAATGTGTGTCAAA-GAGCAG-------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAATGCTG------------------------------------------------------TACGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA-----------A--------TATTAATCGCAGTTGATA------------------TTTTCGCCATAC--TCCGCAGATAG-------------AAG--A-----------------------------------------------------TTTGTGCCTACGCCAAGC--GGG-------------------------AGTGGCAAA-GTAGTAGTAGGGC-CG-------------------------------------------------------------------------------------------CCAAGTGTA-------CCAAGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................AATAC--------GCA-----T----CGGTGGAAAG-CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000110
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCATAC--TCCGCAGATA.....................................................................................................................................................................................................................................................................2012.0022000000
.............................................................................................................................................................A-GAGCAG-------------------CAGCAGCAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..................................................................................................................................................ATGTGTGTCAAA-GAGCAG-------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.......................................TAAAAAT--AATAC--------GCA-----T----CGGTGGAAAG-CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCCAAGC--GGG-------------------------AGTGGCAAA-..................................................................................................................................2311.0010000010
.......................................................................................GTGAAAAGCGC------------AGGAAAAC----------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..............................................................................................................................................................................................................................................................................................................TACGTGTGTGTGTGTCGCAAACATA.........................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................AC--------GCA-----T----CGGTGGAAAG-CCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCTACGCCAAGC--GGG-------------------------AGT.........................................................................................................................................2311.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................A------------------TTTTCGCCATAC--TCCGCAG........................................................................................................................................................................................................................................................................2011.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCCAAGC--GGG-------------------------AGTG........................................................................................................................................1811.0010000010
droYak3
A---------------------------------CG--CCAAAAAGAAAATAC--------GGA-----T----CGGTGGAAAG-TCGTGAAAAGCGC------------AGGAAAAC----------------CCA----ACCAAATGTGTGTCAAA-GAGGAG-------------------CAGCAGCAGGTGTAAATG--TAGTGTTCTAAAGCGC----------------TG--CAATCCTG--------------------------------------------------TGCGTGTGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TATTAATCGCACTTGATA------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------CTTATGCTGCCGCCAAGC--AAA-------------------------AGTGTCTAA-GTAGTGGTAGGGTTCG-------------------------------------------------------------------------------------------CAAAGTGTG-------CCAAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGATTG-------------AAG--A-----------------------------------------------------CTTATG......................................................................................................................................................................................1911.00110000000000
..................................................................................................................................................ATGTGTGTCAAA-GAGGAG-------------------CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................A------------------TTTTCGCCATAC--TCCGCAGATTG-------------AAG--A-----------------------------------------------------C...........................................................................................................................................................................................2911.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGTAGGGTTCG-------------------------------------------------------------------------------------------CAAAGT.................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------AGTGTCTAA-GTAGTGGTAGG.......................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------------------------AGTGTCTAA-GTAGTGGTAGG.......................................................................................................................2311.00101000000000
........................................................................................................................................................GTCAAA-GAGGAG-------------------CAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGC--AAA-------------------------AGTGTCTAA-GTAGTGGT..........................................................................................................................2811.00100000010000
........................................................................................................................................................GTCAAA-GAGGAG-------------------CAGCAGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................GAAAG-TCGTGAAAAGCGC------------AGGAAAAC----------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEug1
A---------------------------------CG--CCAAAGAT--AATGC--------GAA-----T----CGGTGAAAAAACGGTGAAAAGTTA------------AAGAA-AC----------------GCAG---TCGGAATGTGTGTCAAA-AAG----------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------AG--CAATTCTA-ACTGCT---------------TC-T--GTGTG---------------CGTCTGCGAGTGTGTGTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TAATAATCGCAGTTAATA------------------T---------AT--TTCGCAGTTAA-------------AAG--AAAAT-------------T----------------------------------------CTGATGTCCAAGC--CAG-------------------------AATCATCTA--A-----------------------------------------------------------------------------------------------------------AAGTCCCCC-----GTGAGCTSizeHit CountTotal NormTotal
No Reads
droBia1
A---------------------------------CG--CTATAAAT--ACTGT--------GGACGGGAT----CGTTGGAAAA-GCGTGAAATGCGG------------GGGGAACC----------------CCTG---TGGAAATGTGTGTCACCTAAG----------------------CAGCAGCAGGTGTAAATG--CAGTGTTCTAAAGCGC----------------TG--CAAGGC--------------------------GTGCGTGCG---------------TGTGTGTGTGTGTGTGTGTGTCGCA-ACATATGGCAGCCAA--------TA---A-------A--------T---AATCGCAGTTCACA------------------T--TCGCCACCA--TTTGCAGATAG-------------AAC--AAACTTT-TCCTG------------AACA-------------------------TGCCT-------------------------------GCGAAGTAGGCCTCCCCGCTGGA-AGC---------C---------CGAA-----------------------ACCAAACCCGAATCCGAAT--------------------------------------------------------CTGASizeHit CountTotal NormTotal
No Reads
droTak1
A---------------------------------CG--CTAAAAAT--AATAC--------GGA-----TC---GGGTGGAAAA-GCGTGAAAACCAG------------AGGAGAAC----------------GCAG---TCGAAATGTGTGTCAAA-A-------------------------AGCAGCAGGTGTAAGTG--CAGTGTTCTAAAGCGC----------------TG--CACTGCTG-ACTG-------------------------------------------CGCGTGTGTGTTTCGTTGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TAATAATCGCAGTCAATA------------------T--TCGCCATAC-TTTTGCAGATAA-------------AAG--ACATT-------------T----------------------------------------CCGAGGGCCAAGC--AGG-----------------------AATATGACTTGGAAAGC--TTGAGC-CTGGAACCCG----------------------------------------------------------------------------------------------------AATCCASizeHit CountTotal NormTotal
No Reads
droEle1
T---------------------------------CG--CTAAAAAT--AATAC--------GGATCGGAT----CGCTGGAAAT-CAGTGAAAAGCAG------------CGGAAAGC----------------GCAG---TAGAAATGTGTGTCAAA-AAG----------------------CAGCAGCAGGTGTATACG--CAGTGTTCTATAGCGC----------------TG--CAACTCTG-ACTTTCTTTGTCTGTGTGTGT--GTGTGTACGT-------G----TGTGCGTGTGTGTATTTGTGCGTTGCAAACATATGGCTGCAAA--------TA---A-------A--------AAATAATAATAGTAAATA--------------------------ATAC--TTTGCAGATAT-------------GGG--ACACT-------------T----------------------------------------CTGAGTGCCCAGC--CAG-------------------------AATGTCTTA--A-----------------------------------------------------------------------------------------------------------AAGTCAGCCCGGAGAAAGGGASizeHit CountTotal NormTotal
No Reads
droRho1
T---------------------------------CG--CCAAAAAT--AATAC--------GGATCGGAT----AGGTGGAAAT-CGGTGAAAAGCAG------------AGGAAAAC----------------GCAG---TCGTAATGTGTGTCAAA-AAGCAG--CAG----------CAG-CAGCAGCAGGTGTATGTG--CAGTGTTCTAAAGCGC----------------TG--CAATTCTG-ACTCCT---------------CG-T--GTGTG---------------TGTGTATGTGTGTGTGTGCGTTGCAAACATATGGCAGCAAA--------TT---A-------A--------TAATAA---------------------------------------TAC--TTCGCAGATAA-------------AGG--ACATT-------------T----------------------------------------CTGAGGAACAAAC--CAG-------------------------AATGCCCTA--A-----------------------------------------------------------------------------------------------------------AAGTAAG-------CCACGAGSizeHit CountTotal NormTotal
No Reads
droFic1
T---------------------------------CG--CTAAAAAT--AAGAC--------GGA-----TG---CGAAGGAAAA-CTGTGAAAAGTAG------------AGGAAAAC----------------ACAG---TCGAAATGTGTGTCAAA-AGGCAG--CGG--------------CAGCAGCAGGTGTAAGTG--CAGTGCTCTAAAGCGC----------------TG--CAATGCTG-ATTG-------------------------------------------CTC--TCGTGTGTGTGAGTGTCGCAAACATATGGCAGCAAA--------TA---A-------A--------TAATAATCGCAGTTAAT--------------------TTT-GGCA-AC--TCCGCAGAAAT-------------GAGGCAAACT-------------G----------------------------------------CTGAAGGCCAAGC--CAG-------------------------CATGAACTA--AAGA----------------------------------------------------------------------------------------------------------TTGAG-------G-TAGCGSizeHit CountTotal NormTotal
No Reads
droKik1
C----------------------------------T--CTAAAAAT--AACGC--------CCGT-----GGCTCTGTAGATAC-GCGTGAATAATGGCGAAAAACGCACTTAAA-GC----------------GTAGTTC-TCGAATGTGTGTCAAA-G-------------------------AGCAGCAGGTGCAAGTT--CAGTGTTATAAAGCGC----------------AG--CACTTCTG-CCAGCG---------------TG-T--GTGTGCCTGTCGTTGTGGTGTGTGTATGTGTGTGTGTGTGTCGCAAACATATGGCAAAAAG--------TCGG-ACTG--CTAG------------ATAAAT--GAATA------------------TTT---GCATTC--TCTGCAGAAAA-------------CGGTGGT------------------------------------------------------------ACCGCTCAACGGCAG-------------------------AATGACATAGAGAGTGGTTGG--------------------------------------------------------------------------------------------------AAAACTA-------CAAAACTSizeHit CountTotal NormTotal
No Reads
droAna3
GGTGG------------------------GTTCTTG--CTAAAAAT--AATACCCCATATCGGA-----T----CGGTG-----------AATAATAGCA--AACCGCATTTGAATCCGAATCGGAATCGGAATGGAGCTA-TCGAATGTGTGTCACT-AGAGGGC-CAG--------------CAGCTGCAGGTGCAAGTG--CAGTGCCACAAAAAGC----------------TG-----------------------------------------TG---------------CGTGTGTGTGTGTGTTCGTGTCGCAAACATATGGAAGAAATGTCTAAAGTCTG-GTTG--AAAA------------ATAAAT-------------TCTTATTCCTAAC--TTGGCATTC--TTTGCAGAAGA-------------CAGTGA--CTTTGTCCCGG-----------AACTCCAGTGGAATGA---------AGGCTATCC------------------------------------------------GCCGCC-TTA---------G---------CCAA---AAGAAAAGATAAT-------------------------------------------------------------------CTTC-----------TCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................GC----------------TG-----------------------------------------TG---------------CGTGTGTGTGTGTGTTCGTG....................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCCCGG-----------AACTCCAGTGGAATGA---------................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGA---------AGGCTATCC------------------------------------------------GCCGCC-TTA---------G---------CC........................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--CTTTGTCCCGG-----------AACTCCAGT................................................................................................................................................................................................................2211.001000010
droBip1
T---------------------------------TG--CTAAAAAT--ATACC-CCATATCGGATCGGTT----CGGTG-----------AATAATAGCA--AACCGCATTTGAAT-C-----------GGAGTGGAGCTATTCGAATGTGTGTCACT-AGAGGGC-CAA--------------AAGCAGCAGGTGCAAGTG--CTG---------------------------------CATTGCTG-CAC--------------------GTGTGTATG---------------TGTGTGTGTGTGTGTTCGTGTCGCAAACATATGGAGAAATG--------TCTGGATAG--AAAAAAAAAA--AGT-A--CA-TTTTGTA---------------AAAT--TATGCATTC--TTTGCAGAACA-------------GTG--T--CT------CGGCCCCACTCCCCAGCACCAGTGGAATGAGAAGAGAAAAGGCTATACGCCTTGCCCAAAT--CAG-------------------------AATCAGAAG----------------------------------------ATA-------------------------------------------------------------------ATATACT-------CCAGCCASizeHit CountTotal NormTotal
No Reads
dp5
AAAGCGTTGAATGGGCTTGAAAATGCTTTATGCTCG--CTAAAAAT--AATAC--------ACAT-----GGCTCGGTAGA-AT-TTGTGAATAATAT-----ATAGTATATAAGTAC----------------GTAGTTC-TCAAATGTGTGTCAAT-ATGAATA-CCA--------------AAGCAGCAGGTGTAAATG--CAGTGTTATAAAGCGT----------------TG--CAATCTGG-------------------------------------------TGG--ACTGTGTGTGTGTGGGTGTTTCGCAAACATATGGAAAATATATTG--------CATCG--AAA--------TAATAATAAAT-------------GTTTCT------T--CCGTCTT-CCCTTCAAAGATAATCCCACATCACATG-------------------------------------------------------------AT-------------------------------GCGAAGTGCTAAGCGTAGCTGAA-------------------CTTCAATAAATAAAAAAAGAGAACTGTCCAA-----------ATAA-----------------------------------------------CAG-------TCCAACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................GAATAATAT-----ATAGTATATAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACATG-------------------------------------------------------------AT-------------------------------GCGAAGTGCTAAGCGT........................................................................................................................................2611.0010100000000
............................................................................................................................................................................................AGCAGGTGTAAATG--CAGTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.....GTTGAATGGGCTTGAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................TAAGTAC----------------GTAGTTC-TCAAATGTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
AAAGCGTTGAATGGGCTTGAAAATGCTTTATGCTCG--CTAAAAAT--AATAC--------ACAT-----GGCTCGGTAGA-AT-TTGTGAATAATAT-----ATAGTATATAAGTAC----------------GTAGTTC-TCAAATGTGTGTCAAT-ATGAATA-CCA--------------AAGCAGCAGGTGTAAATG--CAGTGTTATAAAGCGT----------------TG--CAATCTGG-------------------------------------------TGG--ACTGTGTGTGTGTGGGTGTTTCGCAAACATATGGAAAATATATTG--------CATCG--AAA--------TAATAATAAAT-------------GTTTCT------T--CCGTCTT-CCCTTCAAAGATAATCCCACATCACATG-------------------------------------------------------------AT-------------------------------GCGAAGTGCTAAGCGTAGCTGAA-------------------CTTCAATAAATAAAAAAAGAGAACTGTCCAA-----------ATAA-----------------------------------------------CAG-------TCCAACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................AT-------------GTTTCT------T--CCGTCTT-CCCTTCAA..........................................................................................................................................................................................................................................................................2411.001010000
......................................................................................................................................................................................................................................................GG-------------------------------------------TGG--ACTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................1820.501000001
droWil2
CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTG---------------TGTGTGTGTTTGTGTGAGCGCTGCAAACATATGGCAAATTA--------TA---AATG--AAA--------TAATAATAAT---T----------GTTG------CATTCTCTCC-TAC--ATTGCAGTCTA-------------AAT--G-----------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................GTGTGTTTGTGTGAGCGCTG.................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
A------------------------------------------------------------------------------------------------------------------------------------------------AATGTGTGTCAAT-ATGTGAGACAGCGACGCGT-CA---AACCAGCAGGTGCAGCTGGCCAGTGTTGTAAAACGAAACGAATACA----TATG--CTATGCTTGTATTTATGTGTTCGCGCGCGC--GTGTGTGTGT-------G----CGTGTGTGTGTGTGTGTGAACAGTGCAAACATATGGCAAAAAA--------TG---ACAG--AAAAAGAAAAACTTCAATAATAATT----------GTTG------CATTCTCTTCGCAG-CCCCGCAGTT---------------------------------------------------------------------------------------------------------------------------------------GC---------C---------TAAC-----------------------AACAACTGCAACTAAGACTTTAAACTGACTGTAATGATGGGATCAAAGCAAACGTAAC-TATGCT-------CCCAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................ACGCGT-CA---AACCAGCAGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TG------CATTCTCTTCGCAG-CCCCG...........................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................G------CATTCTCTTCGCAG-CCCCGCAGT.......................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACTGACTGTAATGATGGGAT....................................2411.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CGT-CA---AACCAGCAGGTGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCAAACGTAAC-TATGC...............2011.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCAAACGTAAC-TATG................1911.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAAGCAAACGTAAC-TATGCT-------.......2411.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAACTGACTGTAATGATGG.......................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAATT----------GTTG------CATTCTCTTCGCAG-................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TGTGTGTCAAT-ATGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGACTGTAATGATGGGATCA..................................2311.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
A-------------------------------------------AT--AACG-----------------------------------------------------------------C----------------GTAGTTG-CGAAATGTGTGTCAAT-ATGTGAGCCAACGACGCGTTCAAACCAGCAGCAGGTGCAGCTGCCTAGTGTTGTACAACGAATCGAATACATTCATATGCGCTATGTTTGTATTTATGTG--C----------GTGCGAGCGT-------GTTTG--TGTGTGTGTGTGTGTGACCAGTGCAAACATATGGCAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................TTG-CGAAATGTGTGTCAAT-ATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
T---------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------TGTGTGTGTATGTGTGAACAGTGCAAACATATGGAAAAAAA--------TCTA-ACAAACAAAAAGAAA---AATGAGAAGATGAAATAATAATTTTTTTG-TT-CATTC-------TC--TTCGCAGTTCC-------------CAATGT---------------------------------------------------------------------------------------------------------T--------GC---------C---------TTAC-----------------------AACAAAAACTGCTCCGACT-CAAACTAAGTGAAATGACGGGATCAAAGC--------------------------AAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACGGGATCAAAGC--------------------------A...1911.00101
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGCTCCGACT-CAAACTAAGT.................................................2411.00110

Generated: 05/18/2015 at 09:36 PM