ID:

dsi_14316

 Coordinate:

2r:19065449-19065598 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.0 -39.5

Flybase annnotation

intergenic

No Repeatable elements found

mature
star
  1. 2l:20348854-20348873 -
  2. 2r:18206609-18206628 -
  3. 2r:18834286-18834305 +
  4. 2r:19008496-19008515 -
  5. 2r:19008625-19008644 -
  6. dsi_14316  2r:19065472-19065491 -
  7. 2r:19065601-19065620 -
  8. dsi_14612  2r:19066190-19066209 -
  9. dsi_14612  2r:19066304-19066323 -
  10. dsi_14612  2r:19066463-19066482 -
  11. dsi_14739  2r:19066634-19066653 -
  12. node_50182:44-63 +
  13. node_50183:15-34 -
  14. node_50183:129-148 -
  15. node_64766:108-127 +

Sense Strand Reads

GGGTAACTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCACACGCGGCAGGTGGATAGGTTGCTCCTTGGTAGGGTGCTCCTTGGTAGGTTGCTCCTGGGTAGGTTGGTCTTGGTTGGGTGGCTGTTTCTCGACCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCCCACCCGGCAGGTGGGTAGGTTGCTCCTGGGTAGGTGGCTGTTTCTCAGTAAACTCGCTTGGGTTTTCC
*************************************************************************.((((((...(((((.((.(((....)))..)))))))...)))..))).......((((((((((((((((.((.....)))))))))).....)))))))).************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 O001
Testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............................................................................................................................................................................................................................TTCTCAGTAAACTCGCTTGGG...... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................CGCGGCAGGTGGATAGGTTGTA............................................................................................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTGGGCCACCTCGATCCCACCCGGTTGGT........................................................ 29 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTCTCAGTAGGCTCGCTTGGG...... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCTCCTGGGTAGGTGGC.............................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TGCTCCTTGGTAGGGTGCTCCTTGGT....................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...TAACTGTTTCTCGTCCAAATCGGCG.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TAGGTTGCTCCTTGGTAGGGTGCTC............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGAAACTTTTGGGCCACCTC......................................................................... 20 0 15 0.93 14 0 0 0 14 0 0 0 0 0 0 0
............................AGAAACTTTTGGGCCACCTC.......................................................................................................................................................................................................... 20 0 15 0.93 14 0 0 0 14 0 0 0 0 0 0 0
................TCCAAATCGGCGAGAAACTCATGGGC................................................................................................................................................................................................................ 26 2 13 0.62 8 0 8 0 0 0 0 0 0 0 0 0
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGTT................................................................................................................................... 25 0 5 0.60 3 2 1 0 0 0 0 0 0 0 0 0
................TCCAAATCGGCGAGAAACTTTTGGGC................................................................................................................................................................................................................ 26 0 13 0.54 7 2 5 0 0 0 0 0 0 0 0 0
........................................................................................TGCTCCTTGGTAGGTTGCTCCTGG.......................................................................................................................................... 24 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGT.................................................................................................................................... 24 0 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................TAGGTTGGTCTTGGTTGGGTG.................................................................................................................... 21 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGGTAGGTTGGTCTTGGTTGGGTG.................................................................................................................... 25 0 6 0.33 2 0 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................GCGAGAAACTTTTGGGCCACC........................................................................... 21 0 14 0.29 4 0 0 0 0 4 0 0 0 0 0 0
.........................GCGAGAAACTTTTGGGCCACC............................................................................................................................................................................................................ 21 0 14 0.29 4 0 0 0 0 4 0 0 0 0 0 0
.............................................................................................................TGGGTAGGTTGGTCTTGGTTGGGT..................................................................................................................... 24 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GGTTGGTCTTGGTTGGGTGG................................................................................................................... 20 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
.....................................TGGGTCACCTCGTTCACACGCGGCAGG.......................................................................................................................................................................................... 27 1 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTGGCTGTATCTCAGTT.................. 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................TCCTTGGTAGGTTGCTCCTGGGTAGGT.................................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGTTGG................................................................................................................................. 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGA.................................................................................................................................... 24 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTCTTGGTAGGTTGCTCCTGGGTAGG..................................................................................................................................... 26 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................TCCTTGGTAGGTTGCTCCTGGGA........................................................................................................................................ 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CATCTGCGTAGGTGGCTGTTT......................... 21 3 11 0.18 2 0 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................TCGGCGAGAAACTCATGGGCCACCTCGT....................................................................... 28 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0
.............TCGTCCAAATCGGCGAGAAACTCATGGGC................................................................................................................................................................................................................ 29 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................TAGGTTGCTCCTTGGTAGGTTGGTCT.............................................................................................................................. 26 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
......................TCGGCGAGAAACTCATGGGCCACCTCGT........................................................................................................................................................................................................ 28 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0
.............TCGTCCAAATCGGCGAGAAACTCTTGGGC................................................................................................................................................................................................................ 29 1 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................TAGGTTGGTCTTGGTTGGGTGGCTG................................................................................................................ 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.............................GAAACTTTTGGGCCACCTCGT........................................................................................................................................................................................................ 21 0 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GAAACTTTTGGGCCACCTCGT....................................................................... 21 0 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGCTCCTTGGTAGGTTGGTCTTGGTT......................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGGTAGGTTGGTCTTGGTTGG....................................................................................................................... 22 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGCTCCTGGGTAGGTTGGTCTTGGTT......................................................................................................................... 26 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
..................................TTTTGGGCCACCTCATTCACACGCGGCA............................................................................................................................................................................................ 28 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GGTAGGTTGGTCTTGGTTGGG...................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.....................................TGGGCCACCTCGTTCACACGCGTCAGG.......................................................................................................................................................................................... 27 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GGCGAGAAACTTTTGGGCCACC........................................................................... 22 0 14 0.14 2 0 0 0 0 2 0 0 0 0 0 0
......................TCGGCGAGAAGCTTTTGGGCCACCTCA......................................................................................................................................................................................................... 27 2 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0
........................GGCGAGAAACTTTTGGGCCACC............................................................................................................................................................................................................ 22 0 14 0.14 2 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................TCGGCGAGAAGCTTTTGGGCCACCTCA........................................................................ 27 2 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0
.................................CTCATGGGTCACCTCGTTCACACGCGG.............................................................................................................................................................................................. 27 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
....................................ATGGGTCACCTCGTTCACACGCGGCAGG.......................................................................................................................................................................................... 28 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
....................................TTGGGCCACCTCATTCACACGCGGCA............................................................................................................................................................................................ 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGGTAGGTTGGTCTTGG........................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTGGTCTTGGTTGGGTG.................................................................................................................... 17 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
....................................ATGGGTCACCTCGTTCACACGCGGCA............................................................................................................................................................................................ 26 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................CCTGGGTAGGTTGGTCTTG............................................................................................................................ 19 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGTCTTGGTTGGGTGGCTGTTTCT........................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTCTTGGTTGGGTGGCTGTTT............................................................................................................. 21 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................TAGGTTGGTCTTGGTT......................................................................................................................... 16 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GTTGCTCCTGGGTAGGTTGGT................................................................................................................................ 21 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGTGGGTAGGTTGCTCC.......................................... 17 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...........................AAGAATCTTTTGGGCCACCTCGTTCACA................................................................................................................................................................................................... 28 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...............................ATCTTTTGGGCCACCTCGTTCACA................................................................................................................................................................................................... 24 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TTGTGGGTAGGTTGGTCTTGGTTGA....................................................................................................................... 25 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................TGGGTAGGTTGCTCCTTGGTAGGTGCCA............................. 28 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGTTGCTCCTGGGTAGGT................................. 19 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTGGTTGGGTGGCTGTTTCTC.......................................................................................................... 21 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................GGTTGCTCCTGGGTAGG..................................................................................................................................... 17 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
......CTGTTTCTTGTCCAA..................................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
...........................................................................................................................TTGGTTGGGTGGCTGTTTCTCG......................................................................................................... 22 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGTTGCTCCTGGGTAGG.................................. 17 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................AGGTTGCTCCTGGGTAGGT.................................................................................................................................... 19 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................GCAGGTGGATAAGTT................................................................................................................................................................................ 15 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGGGTGGCTGTTTCTC.......................................................................................................... 16 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
...............GTCCAAATCGGCGAGAAACTTTTGGGC................................................................................................................................................................................................................ 27 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.............TCGTCCAAATCGGCGAGAAACTTTTGGGC................................................................................................................................................................................................................ 29 0 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
..............CGTCCAAATCGGCGAGAAACTCATGGGC................................................................................................................................................................................................................ 28 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
..............CGTCCAAATCGGCGAGAAACTTTTG................................................................................................................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................TCCAAATCGGCGAGAAACTCTTGGGC................................................................................................................................................................................................................ 26 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AACTTTTGGGCCACCTCGT....................................................................... 19 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...............................AACTTTTGGGCCACCTCGT........................................................................................................................................................................................................ 19 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.................CCAAATCGGCGAGAAACTCATGGGC................................................................................................................................................................................................................ 25 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCAAATCGGCGAGAAACTTTTGGGC............................................................................... 25 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGAAACTTTTGGGCCACT........................................................................... 19 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................TCGGCGAGAAACTCATGGGCCACCTC......................................................................... 26 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
......................TCGGCGAGAAACTTTTGGGCCACCTCT......................................................................................................................................................................................................... 27 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAATCGGCGAGAAACTTTTGGGC............................................................................... 23 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...................AAATCGGCGAGAAACTTTTGGGC................................................................................................................................................................................................................ 23 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
.................CCAAATCGGCGAGAAACTTTTGGGC................................................................................................................................................................................................................ 25 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
......................TCGGCGAGAAGCTTTTGGGCCACCTC.......................................................................................................................................................................................................... 26 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCGGCGAGAAGCTTTTGGGCCACCTC......................................................................... 26 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCAAATCGGCGAGAAACTCATGGGC............................................................................... 25 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...........................GAGAAACTTTTGGGCCACT............................................................................................................................................................................................................ 19 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.....................ATCGGCGAGAAACTTTTGGGC................................................................................................................................................................................................................ 21 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
................GCCAAATCGGCGAGAAACTCATGGGC................................................................................................................................................................................................................ 26 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAATCGGCGAGAAACTTTTGGGCC.............................................................................. 24 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................GCCAAATCGGCGAGAAACTCATGGGC............................................................................... 26 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...................AAATCGGCGAGAAACTTTTGGGCC............................................................................................................................................................................................................... 24 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................TCGGCGAGAAACTTTTGGGCCACCTCT........................................................................ 27 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
......................TCGGCGAGAAACTCATGGGCCACCTC.......................................................................................................................................................................................................... 26 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGGCGAGAAACTTTTGGGC............................................................................... 21 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TTCGCATCCGGCAGGTCGG..................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................TAGGTGGCTCCTGGG......................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTGGCTCCTGGG...................................... 15 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................TAGGTTGCTCCTTGGTAGG................................................................................................................................................................... 19 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................CCATATCGTCGAGAAACT....................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............TTCGTCCAAATCGGCGA............................................................................................................................................................................................................................. 17 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCATATCGTCGAGAAACT...................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CCCATTGACAAAGAGCAGGTTTAGCCGCTCTTTGAAAACCCGGTGGAGCAAGTGTGCGCCGTCCACCTATCCAACGAGGAACCATCCCACGAGGAACCATCCAACGAGGACCCATCCAACCAGAACCAACCCACCGACAAAGAGCTGGTTTAGCCGCTCTTTGAAAACCCGGTGGAGCAAGGGTGGGCCGTCCACCCATCCAACGAGGACCCATCCACCGACAAAGAGTCATTTGAGCGAACCCAAAAGG
*************************************************************************.((((((...(((((.((.(((....)))..)))))))...)))..))).......((((((((((((((((.((.....)))))))))).....)))))))).************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
....TTGACAAAGAGCAGGA...................................................................................................................................................................................................................................... 16 1 9 10.22 92 58 29 1 0 0 3 1 0
....................................................................................................CCAACGAGGACCCATCCAAC.................................................................................................................................. 20 0 9 1.00 9 0 0 0 9 0 0 0 0
....TTGACAAAGAGCAGG....................................................................................................................................................................................................................................... 15 0 2 1.00 2 0 2 0 0 0 0 0 0
........................................................................................................................................ACAAAGAGCTGGTTTAGCCGC............................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................CCCGGTGGAGCAAGGGT.................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0
.....TGACAAAGAGCAGGA...................................................................................................................................................................................................................................... 15 1 20 0.75 15 12 3 0 0 0 0 0 0
............................................................................................................................ACCAACCCACCGACAAAGA........................................................................................................... 19 0 10 0.60 6 0 0 0 6 0 0 0 0
............................................................................AGGAACCATCGCACG............................................................................................................................................................... 15 1 6 0.33 2 0 0 0 0 0 2 0 0
.......................................................................................................................................................................GCCGGTGGAGCAGGGGTGG................................................................ 19 2 4 0.25 1 0 0 1 0 0 0 0 0
...TTTGACAAAGAGCAGG....................................................................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0
.........................................................................................CGAGGAACCATCCAACGAGGACCCAT....................................................................................................................................... 26 0 5 0.20 1 0 0 1 0 0 0 0 0
..AATTGACAAAGAGCAG........................................................................................................................................................................................................................................ 16 1 5 0.20 1 0 1 0 0 0 0 0 0
...TTTGACAAAGAGCAG........................................................................................................................................................................................................................................ 15 1 13 0.15 2 2 0 0 0 0 0 0 0
.........................................................................................................GAGGACCCATCCAACCAGAACCAAC........................................................................................................................ 25 0 7 0.14 1 1 0 0 0 0 0 0 0
.....................................ACCCGGTGGAGCAAGTGTGCGCCGT............................................................................................................................................................................................ 25 0 8 0.13 1 0 0 1 0 0 0 0 0
......GACAAAGAACAGGTTTAGT................................................................................................................................................................................................................................. 19 2 16 0.13 2 2 0 0 0 0 0 0 0
..........................................GTGGAGCAAGTGTGCGCCGTCCA......................................................................................................................................................................................... 23 0 8 0.13 1 0 0 0 0 0 0 0 1
...........AGAGCAGGTTTAGCCGCTTTTTGAGT..................................................................................................................................................................................................................... 26 3 8 0.13 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................GTGGAGCAGGGATGGACCG............................................................ 19 3 9 0.11 1 0 0 1 0 0 0 0 0
......................................CCCGGTGGAGCAAATGTGCG................................................................................................................................................................................................ 20 1 9 0.11 1 0 0 1 0 0 0 0 0
........................................CGGTGGAGCAAGTGTGCGCAGT............................................................................................................................................................................................ 22 1 10 0.10 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................AAAGAGTCATTGGAG............. 15 1 10 0.10 1 0 0 0 0 0 0 1 0
...........AGAGCAGGTTTAGCCG............................................................................................................................................................................................................................... 16 0 12 0.08 1 0 0 1 0 0 0 0 0
.............................CTTTGAAAACCCGGTGGAGCAAGT..................................................................................................................................................................................................... 24 0 12 0.08 1 0 1 0 0 0 0 0 0
...........................CTCTTTGACAACCCGGTGGAGCCAGT..................................................................................................................................................................................................... 26 2 13 0.08 1 0 0 0 0 0 0 0 1
................AGGTTTAGCCGCTCTTTGAAA..................................................................................................................................................................................................................... 21 0 16 0.06 1 0 0 0 0 0 0 1 0
.............AGCAGGTTTAGCCGCTCTTTG........................................................................................................................................................................................................................ 21 0 18 0.06 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19065399-19065648 - dsi_14316 GGGTAACTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCACACGCGGCAGGTGGATAGGTTGCTCCTTGGTAGGGTGCTCCTTGGTAGGTTGCTCCTGGGTAGGTTGGTCTTGGTTGGGTGGCTGTTTCTCGACCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCCCACCCGGCAGGTGGGTAGGTTGCTCCTGGGTAGGTGGCT---------GTTTCTCAGTAAACTCGCTTGGGTTTTCC------------------------------------------
droSec2 scaffold_9:1838065-1838299 - GGGTGACTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCACACCCGGCATGTGGGTAGGTTGCTCCT---------------TGGTAGGTTGCTCCTGGGTAGGTTGGTCTTGGTTGGGTGGCTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGATCACACGCGGCATGTGGGTAGGTTGCTCCTGGGTAGGTGGCT---------GTTTCTCAGTAAACTCGCTTGGGTTTTCC------------------------------------------
dm3 chr2R:18298849-18298952 + G--------CTCCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTAAGACGCGGCTGGTGA------------------------------------------------------------------------------------------------------------------------------------------TCGTGGGTGGGTGGCT---------GTTTCTCAGTAAACTCGCTTGGGGTTTCC------------------------------------------
droEre2 scaffold_4845:12439298-12439401 + G--------CTCCTCGTCCAAATCGGCAAGAAACTTTTGGGCCACCTCGTTCAGACGAGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCGTGGGTAGGTGGCT---------GCTTCTCAGTAAACTCGCTTGGGGTTTCC------------------------------------------
droYak3 2R:18048579-18048682 + G--------CTCCTCGTCCAAATCGGCCAGAAACTTTTGTGCCACCTCATTCAGACGAGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGAGTGGGTGGCT---------GCTTTTCGGTAAACTCGCTTGGGGTCTCC------------------------------------------
droEug1 scf7180000409672:6212618-6212760 + G--------CTCCTCGTCCAAATCGGCCAAAAACTTTTGGGCCACCTCGTTCAGTCGCGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTCACTGGCT------------TCTCAGTAAATTCAGTTGTCGGCTCCATTTTTATTTTGTCAAGATTGACGCACTTTTTCTCAACTAAA
droBia1 scf7180000302143:2401212-2401312 - G--------CTCCTCGTCCAAGTCGGCCAGAAACTTTTGGGCCACCTCGTTGAGACGCGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTGGCTGGCT------------TCTCGGCAAACTCGCTTGGTGGTTCC------------------------------------------
droTak1 scf7180000415739:165184-165284 + G--------CTCCTCGTCCAAGTCGGCCAGGAACTTCTGCGCCACCTCGTTCAGCCGCGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTGGCTGGCT------------TCTCAGCAAACTCGCTTGGCGGCTCC------------------------------------------
droEle1 scf7180000490713:152759-152859 - G--------CTCCTCGTCCAAGTCGGCCAGAAACTTTTGGGCCACCTCATTCAGACGCGGCTGATGG------------------------------------------------------------------------------------------------------------------------------------------TCATGAGTTGCGGGCT------------TCTCAGTAAATTCGCTTGGAGGTTCC------------------------------------------
droRho1 scf7180000780011:15181-15281 + G--------CTCCTCGTCCAAATCGGCCAGAAACTTTTGGGCCACCTCATTTAGACGTGGCTGATGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTGGCGGGTT------------TCTCTGTAAATTCGCTTGGTGGTTCC------------------------------------------
droFic1 scf7180000454066:2216310-2216410 + G--------CTCTTCATCCAAATCGGCCAGAAACTTTTGCGCCACCTCGTTAAGGCGAGGCTGATGA------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTTGCTGGCT------------TCTCGGTAAATTCGCTTGGAGGTTCC------------------------------------------
droAna3 scaffold_13266:7456144-7456244 - G--------CTCCTCGTCCAAATCGGCCAGGAATTTTTGGGCCACCTCATTTAAGCGTGGCTGATGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTTGCTGGTT------------TCTCAGCAAATTCGGGCGCTGCTTCC------------------------------------------
dp5 3:14833495-14833607 - G--------CTCCTCATCTAAGTCGGCCAAAAACTTTTGAGCCACCTCATTCAGGCGCGGCTGATGA------------------------------------------------------------------------------------------------------------------------------------------TCATGCACAGGTGGCTTTTCAATGAATTTCTCTATAAATTCGCCTGAACCTTCC------------------------------------------
droPer2 scaffold_4:4218552-4218664 + G--------CTCCTCATCTAAGTCGGCCAAAAACTTTTGAGCCACCTCATTCAGGCGCGGCTGATGA------------------------------------------------------------------------------------------------------------------------------------------TCATGCACAGGTGGCTTTTCAATGAATTTCTCTATAAATTCGCCTGAACCTTCC------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGGTAACTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCACACGCGGCAGGTGGATAGGTTGCTCCTTGGTAGGGTGCTCCTTGGTAGGTTGCTCCTGGGTAGGTTGGTCTTGGTTGGGTGGCTGTTTCTCGACCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCCCACCCGGCAGGTGGGTAGGTTGCTCCTGGGTAGGTGGCT---------GTTTCTCAGTAAACTCGCTTGGGTTTTCC------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................TTCTCAGTAAACTCGCTTGGG................................................2112.00200000000000002000
.......................................................CGCGGCAGGTGGATAGGTTGTA................................................................................................................................................................................................................................2211.00100000000000001000
..........................................................................................................................................................................................................TGCTCCTGGGTAGGTGGC.................................................................................1811.00100000000001000000
.........................................................................TGCTCCTTGGTAGGGTGCTCCTTGGT..........................................................................................................................................................................................................2611.00100000000001000000
...TAACTGTTTCTCGTCCAAATCGGCG.................................................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................TAGGTTGCTCCTTGGTAGGGTGCTC................................................................................................................................................................................................................2511.00100000000001000000
.............................................................................................................................................................AGAAACTTTTGGGCCACCTC............................................................................................................................20150.9314000014000000000000
............................AGAAACTTTTGGGCCACCTC.............................................................................................................................................................................................................................................................20150.9314000014000000000000
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGTT......................................................................................................................................................................................2550.60300000010002000000
................TCCAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................26130.54700000050002000000
........................................................................................TGCTCCTTGGTAGGTTGCTCCTGG.............................................................................................................................................................................................2450.40200000010001000000
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGT.......................................................................................................................................................................................2450.40200000020000000000
.................................................................................................................TAGGTTGGTCTTGGTTGGGTG.......................................................................................................................................................................2160.33200000000002000000
.............................................................................................................TGGGTAGGTTGGTCTTGGTTGGGTG.......................................................................................................................................................................2560.33200000010000010000
..........................................................................................................................................................GCGAGAAACTTTTGGGCCACC..............................................................................................................................21140.29400400000000000000
.........................GCGAGAAACTTTTGGGCCACC...............................................................................................................................................................................................................................................................21140.29400400000000000000
.............................................................................................................TGGGTAGGTTGGTCTTGGTTGGGT........................................................................................................................................................................2470.29200000000002000000
...................................................................................................................GGTTGGTCTTGGTTGGGTGG......................................................................................................................................................................2070.29200000000002000000
...........................................................................................TCCTTGGTAGGTTGCTCCTGGGTAGGT.......................................................................................................................................................................................2750.20100000000001000000
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGTTGG....................................................................................................................................................................................2750.20100000000001000000
..............................................................................................TTGGTAGGTTGCTCCTGGGTAGGA.......................................................................................................................................................................................2450.20100000000001000000
...........................................................................................TCCTTGGTAGGTTGCTCCTGGGA...........................................................................................................................................................................................2350.20100000000001000000
.................................................................................................................TAGGTTGGTCTTGGTTGGGTGGCTG...................................................................................................................................................................2560.17100000000001000000
.............................GAAACTTTTGGGCCACCTCGT...........................................................................................................................................................................................................................................................21130.15200000000002000000
..............................................................................................................................................................GAAACTTTTGGGCCACCTCGT..........................................................................................................................21130.15200000000002000000
.............................................................................................................TGGGTAGGTTGGTCTTGGTTGG..........................................................................................................................................................................2270.14100000000001000000
.......................................................................................................TGCTCCTGGGTAGGTTGGTCTTGGTT............................................................................................................................................................................2670.14100000010000000000
...............................................................................................................GGTAGGTTGGTCTTGGTTGGG.........................................................................................................................................................................2170.14100000000001000000
.........................................................................................................................................................GGCGAGAAACTTTTGGGCCACC..............................................................................................................................22140.14200200000000000000
........................GGCGAGAAACTTTTGGGCCACC...............................................................................................................................................................................................................................................................22140.14200200000000000000
.............................................................................................................TGGGTAGGTTGGTCTTGG..............................................................................................................................................................................1880.13100000000001000000
.....................................................................................................................TTGGTCTTGGTTGGGTG.......................................................................................................................................................................1780.13100000000001000000
...........................................................................................................CCTGGGTAGGTTGGTCTTG...............................................................................................................................................................................1980.13100000000001000000
......................................................................................................................TGGTCTTGGTTGGGTGGCTGTTTCT..............................................................................................................................................................2580.13100000000001000000
........................................................................................................................GTCTTGGTTGGGTGGCTGTTT................................................................................................................................................................2180.13100000000010000000
.................................................................................................................TAGGTTGGTCTTGGTT............................................................................................................................................................................1680.13100000000001000000
.....................................................................................................GTTGCTCCTGGGTAGGTTGGT...................................................................................................................................................................................2180.13100000000001000000
...............................................................................................................................................................................................GGTGGGTAGGTTGCTCC.............................................................................................1790.11100000000001000000
......................................................................................................................................................................................................AGGTTGCTCCTGGGTAGGT....................................................................................19100.10100000000001000000
...........................................................................................................................TTGGTTGGGTGGCTGTTTCTC.............................................................................................................................................................21100.10100000000000100000
....................................................................................................GGTTGCTCCTGGGTAGG........................................................................................................................................................................................17100.10100000000001000000
...........................................................................................................................TTGGTTGGGTGGCTGTTTCTCG............................................................................................................................................................22100.10100000010000000000
.......................................................................................................................................................................................................GGTTGCTCCTGGGTAGG.....................................................................................17100.10100000000001000000
...................................................................................................AGGTTGCTCCTGGGTAGGT.......................................................................................................................................................................................19100.10100000000001000000
................................................................................................................................TGGGTGGCTGTTTCTC.............................................................................................................................................................16110.09100000000001000000
...............GTCCAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................27120.08100000000001000000
.............TCGTCCAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................29120.08100000010000000000
..............CGTCCAAATCGGCGAGAAACTTTTG......................................................................................................................................................................................................................................................................25120.08100000000001000000
................................................................................................................................................................AACTTTTGGGCCACCTCGT..........................................................................................................................19130.08100000000001000000
...............................AACTTTTGGGCCACCTCGT...........................................................................................................................................................................................................................................................19130.08100000000001000000
..................................................................................................................................................CCAAATCGGCGAGAAACTTTTGGGC..................................................................................................................................25140.07100000000001000000
............................................................................................................................................................GAGAAACTTTTGGGCCACT..............................................................................................................................19140.07100100000000000000
......................TCGGCGAGAAACTTTTGGGCCACCTCT............................................................................................................................................................................................................................................................27140.07100000000001000000
....................................................................................................................................................AAATCGGCGAGAAACTTTTGGGC..................................................................................................................................23140.07100000010000000000
...................AAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................23140.07100000010000000000
.................CCAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................25140.07100000000001000000
...........................GAGAAACTTTTGGGCCACT...............................................................................................................................................................................................................................................................19140.07100100000000000000
.....................ATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................21140.07100100000000000000
....................................................................................................................................................AAATCGGCGAGAAACTTTTGGGCC.................................................................................................................................24140.07100010000000000000
...................AAATCGGCGAGAAACTTTTGGGCC..................................................................................................................................................................................................................................................................24140.07100010000000000000
.......................................................................................................................................................TCGGCGAGAAACTTTTGGGCCACCTCT...........................................................................................................................27140.07100000000001000000
......................................................................................................................................................ATCGGCGAGAAACTTTTGGGC..................................................................................................................................21140.07100100000000000000
....................................................................TAGGTTGCTCCTTGGTAGG......................................................................................................................................................................................................................19190.05100000000001000000
droSec2
GGGTGACTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTCACACCCGGCATGTGGGTAGGTTGCTCCT---------------TGGTAGGTTGCTCCTGGGTAGGTTGGTCTTGGTTGGGTGGCTGTTTCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGATCACACGCGGCATGTGGGTAGGTTGCTCCTGGGTAGGTGGCT---------GTTTCTCAGTAAACTCGCTTGGGTTTTCC------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................TCCT---------------TGGTAGGTTGCTCCTGGG............................................................................................................................................................................................2290.2222000
..................................................................................................................AGGTTGGTCTTGGTTGGGT........................................................................................................................................................................1970.1410100
............................................................................TCCT---------------TGGTAGGTTGCTCCTGGGT...........................................................................................................................................................................................2390.1110010
............................................................................TCCT---------------TGGTAGGTTGCTCCTGGGTA..........................................................................................................................................................................................2490.1111000
dm3
G--------CTCCTCGTCCAAATCGGCGAGAAACTTTTGGGCCACCTCGTTAAGACGCGGCTGGTGA------------------------------------------------------------------------------------------------------------------------------------------TCGTGGGTGGGTGGCT---------GTTTCTCAGTAAACTCGCTTGGGGTTTCC------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................GTGA------------------------------------------------------------------------------------------------------------------------------------------TCGTGGGTGGGTGGCT---------G......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................CTGGTGA------------------------------------------------------------------------------------------------------------------------------------------TCGTGGGTGGGTGGCT---------G......................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.............TCGTCCAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................2930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................TCCAAATCGGCGAGAAACTTTTGGGC...................................................................................................................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
G--------CTCCTCGTCCAAATCGGCAAGAAACTTTTGGGCCACCTCGTTCAGACGAGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCGTGGGTAGGTGGCT---------GCTTCTCAGTAAACTCGCTTGGGGTTTCC------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
G--------CTCCTCGTCCAAATCGGCCAGAAACTTTTGTGCCACCTCATTCAGACGAGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGAGTGGGTGGCT---------GCTTTTCGGTAAACTCGCTTGGGGTCTCC------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
G--------CTCCTCGTCCAAATCGGCCAAAAACTTTTGGGCCACCTCGTTCAGTCGCGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTCACTGGCT------------TCTCAGTAAATTCAGTTGTCGGCTCCATTTTTATTTTGTCAAGATTGACGCACTTTTTCTCAACTAAASizeHit CountTotal NormTotal
No Reads
droBia1
G--------CTCCTCGTCCAAGTCGGCCAGAAACTTTTGGGCCACCTCGTTGAGACGCGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTGGCTGGCT------------TCTCGGCAAACTCGCTTGGTGGTTCC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G--------CTCCTCGTCCAAGTCGGCCAGGAACTTCTGCGCCACCTCGTTCAGCCGCGGCTGGTGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTGGCTGGCT------------TCTCAGCAAACTCGCTTGGCGGCTCC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
G--------CTCCTCGTCCAAGTCGGCCAGAAACTTTTGGGCCACCTCATTCAGACGCGGCTGATGG------------------------------------------------------------------------------------------------------------------------------------------TCATGAGTTGCGGGCT------------TCTCAGTAAATTCGCTTGGAGGTTCC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G--------CTCCTCGTCCAAATCGGCCAGAAACTTTTGGGCCACCTCATTTAGACGTGGCTGATGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTGGCGGGTT------------TCTCTGTAAATTCGCTTGGTGGTTCC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
G--------CTCTTCATCCAAATCGGCCAGAAACTTTTGCGCCACCTCGTTAAGGCGAGGCTGATGA------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTTGCTGGCT------------TCTCGGTAAATTCGCTTGGAGGTTCC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
G--------CTCCTCGTCCAAATCGGCCAGGAATTTTTGGGCCACCTCATTTAAGCGTGGCTGATGG------------------------------------------------------------------------------------------------------------------------------------------TCATGGGTTGCTGGTT------------TCTCAGCAAATTCGGGCGCTGCTTCC------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
dp5
G--------CTCCTCATCTAAGTCGGCCAAAAACTTTTGAGCCACCTCATTCAGGCGCGGCTGATGA------------------------------------------------------------------------------------------------------------------------------------------TCATGCACAGGTGGCTTTTCAATGAATTTCTCTATAAATTCGCCTGAACCTTCC------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................CCAAAAACTTTTGAGCCACC...............................................................................................................................................................................................................................................................2011.0010000001000
droPer2
G--------CTCCTCATCTAAGTCGGCCAAAAACTTTTGAGCCACCTCATTCAGGCGCGGCTGATGA------------------------------------------------------------------------------------------------------------------------------------------TCATGCACAGGTGGCTTTTCAATGAATTTCTCTATAAATTCGCCTGAACCTTCC------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/19/2015 at 05:42 AM