ID:

dsi_14308

 Coordinate:

2l:16033037-16033309 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.7

Flybase annnotation

exon [2l_16033310_16033503_-]; CDS [2l_16033310_16033503_-]; CDS [2l_16032903_16033036_-]; exon [2l_16031798_16033036_-]; intron [2l_16033037_16033309_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCGGGCATCGATCTGATGGCCACCGGCGCATTCTGGCAAAACTATTCCGGTGAGTTGAGAGCTGGAAACATAATATATTGTTTAAGATTGTGGGATAAATGTCAGTTAATATGTTGAGTAATAACAGAAAGCTAAATCCTGAATTATAAAGGATATCATAGTCCTGAAAAGCAGTGCATCCATAACTAATTTATGTAACATGCCATAAAAAAACACTTTGTCACTTTCAACTTAAAAGTATTTCAATGATTATTGAAATTTACATTTACCTTAAGTTGCCTCTAAATAAAGGTTCCCCATTTCCACACTGATCTCCTTGCAGAATCCCTGGCTCAGGAGCTGGAAATGGAGCGCAAGAGCCGTGCCGCCAAT
******************************************************************************************..(((((.....((.((((.(((.....))).)))).)).......)))))**************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................................................................................................................................................CTGGAAATGGAGCGCAAGAGC............ 21 0 1 2.00 2 1 0 1 0 0 0 0
.............................................TTCCGGTGAGTTGAGAGCTGGA.................................................................................................................................................................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0
...........ATCTGATGGCCACCGGCGCAT..................................................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................GTGGGATAAATGTCAGTTAAT...................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGAGCCGTGCCGCC... 21 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TGGAAATGGAGCGCAAGAGCCGTGC....... 25 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................AAATGGAGCGCAAGAG............. 16 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ACACTGATCTCCTTGCAGAAT............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................GTTAATATGTTGAGTAA........................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................CTTGCAGAATCCCTGGCTCAGGAGC................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GGAAATGGAGCGCAAGAGCCG.......... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................ATTGTGGGATAAATGTCAATT......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................AATAACAGAAAGCTAAATCCT........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TCAGTTAATATGTTGAGTAAT.......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................ATTGTTTAAGATTGTGGGATA................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................GTCCTGAAAAGCAGTGCATCC............................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................TGGAAACATAATATATTGTTT................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
..........................................CTATTCCGGTGAGTTGAGAGC...................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATTTACATTTACCTTAAGTTG.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.......ATCGATCTGATGGCC............................................................................................................................................................................................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................CAGGAGCTGGAAATGGAGCGC.................. 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................CTCAGGAGCTGGAAATGGAGC.................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................TATTGTTTAAGATTGTGGGATAAATGT.............................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TTTAAGATTGTGGGATAAATG............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GAGCTGGAAATGGAGCGCAAG............... 21 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................ATGGAGCGCGAGAGCCGTGCC...... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................AATGGAGCGCAAGAGCCGTGC....... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................AAGTTGCCTCTAAATAAAGGT............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................AGATTGTGGGATAAATGTCAGT.......................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................AAAAGCAGTGCATCCATAACT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................ATAAAAAAACAGTTTGTAACT................................................................................................................................................... 21 2 3 0.33 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................ACACACTTTGCAACTTTCAACT............................................................................................................................................ 22 3 3 0.33 1 0 0 0 0 1 0 0
............................................................................................................AATATGTTGAGTTATA......................................................................................................................................................................................................................................................... 16 1 7 0.29 2 0 0 0 0 0 2 0
..................................................................................................................................................................................................TGTAACATGTCATAAA................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0
................................................TAGTGAGATGAGAGCTGGAA................................................................................................................................................................................................................................................................................................................. 20 3 11 0.18 2 0 0 0 0 2 0 0
................................................................................................................................................................................................................................................................................TAAGTTGACTGTAAAAAAAGGT............................................................................... 22 3 12 0.17 2 0 0 0 1 0 1 0
.............................................................................................................................................................................ACTGCATCCATAACT......................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 1
.............................................................................................................................................................................AGTGCATCCATATCAAA....................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0
.......................................................................................................CAGGTAACCTGTTGAGTA............................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0
.......................................................................................................................TAATTACAGAAGGCTA.............................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0
...............GATGGCTACCGGCGCT...................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
........................................................TGGGAGCTGGAAACA.............................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

AGGCCCGTAGCTAGACTACCGGTGGCCGCGTAAGACCGTTTTGATAAGGCCACTCAACTCTCGACCTTTGTATTATATAACAAATTCTAACACCCTATTTACAGTCAATTATACAACTCATTATTGTCTTTCGATTTAGGACTTAATATTTCCTATAGTATCAGGACTTTTCGTCACGTAGGTATTGATTAAATACATTGTACGGTATTTTTTTGTGAAACAGTGAAAGTTGAATTTTCATAAAGTTACTAATAACTTTAAATGTAAATGGAATTCAACGGAGATTTATTTCCAAGGGGTAAAGGTGTGACTAGAGGAACGTCTTAGGGACCGAGTCCTCGACCTTTACCTCGCGTTCTCGGCACGGCGGTTA
****************************************************************************************************************************************************************************************************************************************..(((((.....((.((((.(((.....))).)))).)).......)))))****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 GSM343915
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................................................................................................................................................................CGCGTTCTCGGCACGGCGGTT. 21 0 1 3.00 3 1 1 0 1 0 0 0
......................TGGCCGCGTAAGACCGTTTTGAT........................................................................................................................................................................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGTGAAACAGTGAAAGTTGAA........................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CTAGAGGAACGTCTTAGGGAC.......................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................................TTGTCTTTCGATTTAGGACTT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................CAACTCTCGACCTTTGTATTA.......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
AGGCCCGTAGCTAGACTACCG................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AAGGTGTGACTAGAGGAACG.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GGTAAAGGTGTGACTAGAGGAA...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TAAAGGTGTAACTAGAGGAAC..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................TTCGTCACGTAGGTATTGATTAAA.................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GACCTTTACCTCGCGTTCTCG............ 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................TCGATTTAGGACTTAATATTT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................ACTCAACTCTCGACCTT................................................................................................................................................................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0
................TACCGGTGGCCGCGTAAGACCGTT............................................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................ATTCTAACACCCTATTTACAGTCAATT....................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
................TACCGGTGGCCGCGTAAGACC................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................GTCACGTAGGTATTGATTAA..................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................CAGGACTTTTCGTCACGTAGGTAT............................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
..................AGGGCGGCCGCGTAAGACCGTTT............................................................................................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TCTTAGGGACCGAGTCCTC................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................CGGAGATTTATTTCCAAGGGGT......................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................GGCCGCGTAAGACCGTTTTGA......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................TAAGGCCACTCAACTCTCGAC.................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................ACGTAGGTATCGATTAAATA.................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
.........................CCGCGTAAGACCGTTT............................................................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................TCTTTCGATTTAGGACTT..................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
................TACCGGTGGCCGCGTAAGACCGTTTT........................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TTTCCAAGGGGTAAAGGTGTGA............................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................AATACAACTCATTATTGTCTTT.................................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................AAGGGGTAAAGGTGTGACT............................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CTAGAGGAACGTCTTA............................................... 16 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGCGAAACAGTGAAAGTTGAA........................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................GTGTGACTAGAGGAACGTCTT................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TTCCAAGGGGTAAAGGTGTGA............................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GGGGTAAAGGTGTGACTAGAGGAACGT................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
................TACCGGTGGCCGCGTAAGAC................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTTCTCGGCACGGC..... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................GACTTTTCGTCACGTAGGTATTGATT....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................CTATATTATCAGGACTTT........................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0
........................GCCGCGTAAGACCGTTTTGAT........................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GACTAGAGGAACGTCTTA............................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................TTTCGTCACGTAGGTATTGAT........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................CCGCGTAAGACCGTTTTGATA....................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................GGCCGCGTAAGACCGTTCTGA......................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................CTTTCGATTTAGGACT...................................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................TCAGTTCTTTTCGTCATGTAGGT.............................................................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................AAGGGGTAAAGGTGTGACTAGA.......................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AGAGGAACGTCTTAGGGACCGA....................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................AGATCTATTTCCAAGG............................................................................ 16 1 3 0.67 2 0 0 0 0 0 0 2
............AGACTACCGTAGGCCACGTAA.................................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................GAAACAGTGAAAGTTG............................................................................................................................................. 16 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................GATTTAGGATTTAATGTTTTCT........................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................................................................TTTCGTCATGTAGGTA............................................................................................................................................................................................. 16 1 9 0.11 1 1 0 0 0 0 0 0
..................................................................................................................AACTTATTATTGTCTT................................................................................................................................................................................................................................................... 16 1 20 0.10 2 0 0 0 0 0 2 0
................................................................................................AGTTACAGTCAATTAT..................................................................................................................................................................................................................................................................... 16 1 11 0.09 1 0 0 0 0 0 1 0
............AGACTACCGTAGGCCACGT...................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1
.........................................TGATAACGCCACTCCA............................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................................GGAACGTCTTAAGGTCC......................................... 17 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:16032987-16033359 - dsi_14308 T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCATTCTGGCAAAACTATTCCGGTGAGTT--------------------------------GAGAGC-T-GGAAACATAATATAT-------TGTTTAAG-----ATTGTGGGATAAAT----------GTCAG----------------------TTAATATGTTGAGTAATAACAGAAAG-C-TAA-ATCCTGA----------------------------------------------------------------------------------ATTA-T---AAAGGATATCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----GCATCCATAACTAATTT-----------------------------------------------------------------------ATGTAACATGCCATAAAA---AA--------------------ACACTTTGTCA-----CTTTCAACTTAAAAGTATTTCA-----------------------------------------------------------------------------------------------------------------ATGATTAT--TGAAATTTACAT-TT--AC-CTTAAGT-------------------------------------TGCCTCTAA--ATAAAGG-----TT-CCCC-A-T----TTCC----ACAC------T----GATCTCCTTGCAGAATCCCTGGCTCAGGAGCTGGAAATGGAGCGCAAGAGCCGTGCCGCCAAT
droSec2 scaffold_7:113873-114235 - T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCCGGTGAGTT--------------------------------GAGAGC-T-GGAAACATATTATCT-------TGTTTAAG-----ATTGTGGGATAAGT----------GTCAG----------------------TTAATAAGTTGAGTAATAGCA-AAAG-C-TAA-TTCCTGA----------------------------------------------------------------------------------ATTA-T---AAAGCATATCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----ACTTCCATAACTAATTT-----------------------------------------------------------------------AAGTAACATGCCATT-AA---AA--------------------ACACTTTGTCA-----CATTCAACCTAAAAGTATTTCA--AT----------------------------------------------------------------------------------------------------------GGAATGATTAT--TGATTATT-----------------AT-------------------------------------TGCCTCTAA--ATAAAGG-----TT-CCCC-A-T----TTCC----ACAC------T----GATCTCCTTGCAGAATCCCTGGCTCAGGAGCTTGAAATGGAGCGCAAGAGCCGTGCCGCCAAT
dm3 chr2L:16467705-16468102 - T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCCGGTGAGTT--------------------------------GAGAGC-C-TGAAACATATTATCT-------TGTTTAAG-----ATTGTGGGATAAAT----------GTCAG----------------------TTAATATGTTGAGTAATAGCA-CAAGCC-TGAAATTCGGA----------------------------------------------------------------------------------ATTA-T---AAAGGATATCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----ACTTCCATAACTAATTT-----------------------------------------------------------------------AAGTAACA----ATA-AA---AA--------------------ACACATTGTCA-----CTTTCAACCTAATAGTATTTCA--AT------------------------------------GC-------------------------------------------------AAATGTTCTTGAGCAGCTTGGAATGATTATACTGATACTTTTATTTT--TC-CTTAAAT-------------------------------------TGCCTCTAA--ATAAAGA-----TT-CCCC-A-T----TTCC----ACAC------T----AATCTCCTTGCAGAATCCCTGGCTCAGGAGCTGGAAATGGAGCGCAAGAGCCGTGCCGCCAAT
droEre2 scaffold_4845:19534931-19535063 - T-----------------------------CCCGGCATCGACCTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GAGACC-C--GATACACACGACGT-------TGATTTAG-----ATTGCAGGGTACAT----------TCCAG------------------------------TTGAGTAATACAA-AAATGC-TGA-ATTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:2926065-2926432 - C-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GGCACC-C-TGAAACATATTATAT-------TATGTTAG-----ATTGGGGGTTAAAG------TAAAGTCAG------------------------------TTTAGTAATACGG-AAAC-CTTGA-ATTCTGC----------------------------------------------------------------------------------ATTA-T---AAAGGATCTCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGT-------------------------------------------------------------------------------------------------ATAATTTCATTTCCG----------------------------------------------------------------------------------------------TAAAA---AA--------------------TCACTTTGTCA-----TATTTATCCTTA---------A--AT------------------------------------GC-------------------------------------------------AAGTGTTCTTGGGCAGCTTAGAATGATAGT--TTAATTCTCCAT-TACATC-CTTAAGT-------------------------------------TGTCTCTAA--A-AAAGG-----TT-CCCC-C-T----TTC-----CCGC------T----GCTCTCCCTACAGAATCCCTGGCCCAAGAGCTGGAAATGGAGCGCAAGAGCCGCGCCGCCAAC
droEug1 scf7180000408961:44028-44272 - T-----------------------------CCCGGTATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAATTATTCCGGTAAGTT--------------------------------AAGAAA-A-TATAAC------------------------------------------------------TCTTTCTAATAAATAATTTCTTTCTCTAAATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGTATATAAAATATATTAAAGCTAATCCCTTAAAATCCTTTCTATAA------TTTT-GTT--T-CGATT----TTTC----CCAT-----------TCTTTCCTTACAGAATCCCTGGCCCAAGAGCTAGAGATGGAGCGCAAAAACCGTGCCGCCAAT
droBia1 scf7180000301468:595763-596136 - T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GAGGTC-C-TAAAATATGTCATGG-------ATTTTAGG-----GTTCTAACATA---------------CAG----------------------TAAATAGTTTGAA--------------------------------------AACA----------TTAT-------GAGACAACAGA---ACTCAG-------C------------------AGCA-GA-AAAAGTATCTTATAGAT------------------------------------TGCCATA---------CCTTC-----TTGTTTATA----------TTTAACTTTTTACC------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------TCACCTTA-----------------------------------------------------------------------------GA------------------------------------------------------------------------------------------------GCTAGA--GGC----CTTTAAAAAATCT-TTAA-----------G------AAATGTTTTTGTGGGGCCTATGT-------------A-T-AAAA-TATA----TATTTTTTCC----------------------------------CTTTCTAA--AGACATC-----TC-TTCC-A-T----TTC-----CCAT------T----TATTTCCTTGTAGAATCCCTGGCCCAGGAGCTGGAGATGGAGCGCAAGAGCCGTGCCGCCAAT
droTak1 scf7180000415914:132271-132638 - T-----------------------------CCAGGAATCGATTTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GGGAAC-C-TAAACTAAAATATAG-------TTCTTAAG-----TTAGGA-----AATGTTAAGTTA------------------------------AATATGTT-AGAAATACAA-AAAT-TT-AA-AGT--GATTTAACGTGAAAATATAAAAAAGAAATTAAT--------------------------------------------------------------------------------------------------------------------------------------------ATAAATA----------T-----------------------TTAATATCTA--------AAAC----------TA------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAAA-----------------------------------------------------------------------------AC------------------------------------------------------------------------------------------------GCTAGA--AAC----TCTGAAGAAATCGAATAA-----------A------ATATGTTTTTGTAGAGTCTTAAA-------------CTTAAGAA-AACA----TATTA----------------------------------AAATTTTTACTAA--G-ATTTG-----TTTTT-A-T-T----TTTT----TCAT------G----TTTTTCCCTATAGAATCCCTGGCCCAAGAGCTGGAGATGGAGCGCAAAAGCCGTGCCGCCAAT
droEle1 scf7180000490579:886431-886970 + T-----------------------------CCGGGCATCGATCTGATGGCCACCGGAGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------TGGAGC-T-TGAATCAGATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGG----------------------------------------------------------------------------------------------------------------T----------------TCAACTAAATTTATTCCTGTAAAGTGTTAAAAAGAAGATATATAATTTTTGTAAGTTTTAAAATATTTATTTAAAATAATTAAATGACAATTAAAATGACATTCAAATAAATAAAAATAGAAAGT-----GTTTCCGTAATTTGTGTTTATATTTTGTCC-TTGGTGACTAAATACTCTTCATGCAAAATGTAATAAACCTATAATCATAATCAATTATAAATACATAGCATTAAAATTAAACGCTTAGTAAATAACATGAGCGCTTTGTTAAAAGATATTTAATTTAAGAGAACCCCACAATTATTTGTTTATTGTTTAAAAATTATCAAACTTACGGTCT----------------------------------------------------GGCTTTGATCAGT------------------------TAT-TATGTCTTTTAAAT-------------------------------------TGTCTATAA--A------------T--TCC-A-A----TTTT----GCAT------TTGTCTGATTCTTTACAGAATCCCTGGCCCAAGAGCTGGAGATGGAGCGCAAAAGCCGGGCCGCCAAT
droRho1 scf7180000772118:1706-1848 + T-----------------------------TAATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTAATA-----CTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------CAT-TT--AT-TGTTAAA-------------------------------------CATTTTATA--ATACAGTTTT--TT-TT-CGA------TTTT----TTAT------T----TATTTCCTTATAGAATCACTGGCCCAAGAGCTGGAGATGGAGCGCAAAAGCCGGGCCGCCAAT
droFic1 scf7180000454078:406365-406750 - T-----------------------------CCGGGCATCGATCTGATGGCCACTGGAGCCTTCTGGCAGAACTACTCCGGTAAGTT--------------------------------GAGAGT-C-AATATAATAATACATAATACCCT----AAGTCATAATTTTATTAAA---------------CAA----------------------AA--------------------------------------------------------------AAAAT-------GTAACAACAAA---TTTCAATATCTTGATG--------A-------ACCT-C-------------------------------------AGAGAAAATGAAAATTAT-------TTTTTGGAACTTTT------------------------------------------AAATATTTTTGTTATGAATTTTAT---ATCATCTTATCTTATGCC---------------------------------------------------------------------------------------------------------------------CC-------------ATATTTTGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGC--GGT----GTTAAAAAAATCT-CCATATAAACTACTTG--------------------------AAATG-----------------------------------TCCT---------------------------------TTTTTTAT--TGA--TC-----TC-TTAC-C-AAACA---TTTTCCCATTTTTGTT----TCT-GTCTTGAAGAATCCTTGGCCCAAGAGCTGGAGATGGAGCGCAAGAGCCGAGCGGCCAAT
droKik1 scf7180000302382:259262-259392 - A-----------------------------TTTTTTAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTACCTCTTAAAAT------------------------ATTCT--ACAA------------TT-TCCC-A-A----ATATTTTCTTA------------TTATTCCTCTCAGAATCCCTGGCCCAGGAGCTGGAGATGGAGCGCAAGACGCGGGCGGCCAAT
droAna3 scaffold_12916:16084052-16084433 + T-----------------------------CCTGGCATCGATCTGATGGCCACCGGAGCCTTTTGGCAAAACTATTCCGGTGAGTT--------------------------------GGA--CTTAAAAATTAAATTAAAA-------ACTTAAGG-----ATT--------TTT----------TTTTA----------------------TATATATTCTGAGTA-TAG---A------------------------------------------------------AAAGTTCATA---A-------AATAGCTTTCAAAACTAGTTTTAAAATA-TA-AAAAGTATCCTTGAGATATATACTTTTGTAAAATCAAAG---------------GCAATT---------CAATC-----TTGTTTATGGGTCGTAAATATTATC---------------------------------------------------------------AC-------------------------------------------------------------------------------------------------AAT-----ACTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTAAATATAAATATAT-CCTTATAAATTATGTA----------------------------------------------------------------A-------------------------------------CTCCTCTAA--ATAAAAA---CATA-TCCC-T-T----TTCTTCT-TTTC------C----CGTATCCTTGCAGAGTCCCTAGCCCAGGAGCTGGAAATGGAGCGCAAGACCCGGGCAGCCAAT
droBip1 scf7180000396717:321540-321814 + GCCAGTAATGGAAAAGGACCCTGGAGCTATCCTGGCATCGATCTGATGGCCACTGGAGCCTTCTGGCAAAACTATTCCGGTGAGTA--------------------------------AAG--T-T-TGAA-------------------------------------------------------------------------------------------------------------------------------------AACA----------A------------------------------------------------------------------------CAATTAGTT------------------------------------TTCTTAA---------TTTTTCATAGATGTATATA----------TTAAGTAATATACATTTTAAATATTAAATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATTTCCT------------------------------------TTTAA--ATAAAAA---TATT-TCCC-T-A----TTCTTTT-CTAC------C----CGAATCTTTACAGAGTCTCTGGCCCAGGAGCTGGAAATGGAGCGCAAGACCCGGGCCGCCAAT
dp5 4_group3:8190316-8190600 - dps_1616 T-----------------------------CCGGGCATCGATCTGATGGCCACGGGGGCCTTCTGGCAGAACTATTCCGGTGAGTTTCTGAAGGGCAAATATTTCTCTATATATATTTGAGGGC-T-CAAGAG---------------------------------------------------------------------------------------------------------------------------------------------GGAAATTAGTCTCTGGAGAGACCAGA---A-------TGTGGCGG--------A-------ATCT-T-------------------------------------AGAGGGATTGAGAGG-GA-------TCTTTAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTATATTA-----ATATC-----------------------------------------------------------------------------------------------------------------------------------------------------CAG-AT--GA-CCCTT-------------------------------------------------------AA---CCTT-TCCC-A-T----TTCTTCT-GTT-------TTTT-GTGTCCCTTGCAGAATCTCTAGCCCAAGAGCTGGAAATGGAGCGCAAAACGCGTGCCGCCAAC
droPer2 scaffold_1:9640383-9640439 - T-----------------------------CCGGGCATCGATCTGATGGCCACGGGGGCCTTCTGGCAGAACTATTCCGGTGAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:4685373-4685540 - A-----------------------------AAGACCATTCACTTAATTTAGACTTGAAAGTTCAGT-------------------------------------------------------------------------------------------------------------------------TTAT------------------------------GTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATCAAATCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGTCCACTTGAAAGATGTC----------------------------TA------------AT-TT-TGA------TTTT----TTAT------TTTT-ATGATCTTTATAGAGTCCCTGGCACAGGAGTTGGAAATGGAGCGTAAAACTCGCGCTGCGAAT
droVir3 scaffold_12963:13010748-13010819 + T-----------------------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TTAC------A----ATTCTTTTTAAAGAATCCCTCGCACAGGAGCTGGAAATGGAGCGCAAGACACGTGCAGCGAAT
droMoj3 scaffold_6500:7071627-7071988 - T-----------------------------CCAGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCGGGTAAGCT--TAAATAGAAAATATTTCTACAAA------------------------TTTATAT-------TATTTGCG-----ATTATATACTCTGA----------ATCCA----------------------TTCAAAAGTAAAGTAAAAGT---------------------------------------------------ATTTTTATATATCAGACAAA-------TG--AGAG--------T-------ATATATAGATATGT---ATTCACATATATAGATCTGT------AGATATATGGATATG-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTGAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTCCCATCTTCAAG---------T-CCATTTAAGTT----AACTCCT--ATCGTCGCCATCAGCTGGTCA-----------------------------------------------------------------------------------------TATAT--TT-AT-TGC------CTAT----TTCA------T----TATATTTTGAAAGAATCCCTTGCACAGGAGCTGGAAATGGAGCGCAAGACACGCGCTGCGAAC
droGri2 scaffold_14936:7626-7685 + T-----------------------------CCAGGCATCGATTTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCGGGTAAGTT--------------------------------GAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCATTCTGGCAAAACTATTCCGGTGAGTT--------------------------------GAGAGC-T-GGAAACATAATATAT-------TGTTTAAG-----ATTGTGGGATAAAT----------GTCAG----------------------TTAATATGTTGAGTAATAACAGAAAG-C-TAA-ATCCTGA----------------------------------------------------------------------------------ATTA-T---AAAGGATATCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----GCATCCATAACTAATTT-----------------------------------------------------------------------ATGTAACATGCCATAAAA---AA--------------------ACACTTTGTCA-----CTTTCAACTTAAAAGTATTTCA-----------------------------------------------------------------------------------------------------------------ATGATTAT--TGAAATTTACAT-TT--AC-CTTAAGT-------------------------------------TGCCTCTAA--ATAAAGG-----TT-CCCC-A-T----TTCC----ACAC------T----GATCTCCTTGCAGAATCCCTGGCTCAGGAGCTGGAAATGGAGCGCAAGAGCCGTGCCGCCAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAATGGAGCGCAAGAGC............2112.00200100000001000000
..........................................................................TTCCGGTGAGTT--------------------------------GAGAGC-T-GGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000000002000000
........................................ATCTGATGGCCACCGGCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
.....................................................................................................................................................................GTGGGATAAAT----------GTCAG----------------------TTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGAGCCGTGCCGCC...2112.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAATGGAGCGCAAGAGCCGTGC.......2512.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGCGCAAGAG.............1611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC------T----GATCTCCTTGCAGAAT...............................................2111.00100000000001000000
..............................................................................................................................................................................................G----------------------TTAATATGTTGAGTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGAATCCCTGGCTCAGGAGC................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGAGCGCAAGAGCCG..........2111.00100000000001000000
...................................................................................................................................................................................................................................AATAACAGAAAG-C-TAA-ATCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...........................................................................................................................................................................................TCAG----------------------TTAATATGTTGAGTAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
............................................................................................................................................AT-------TGTTTAAG-----ATTGTGGGATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----GCATCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................T-GGAAACATAATATAT-------TGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.......................................................................CTATTCCGGTGAGTT--------------------------------GAGAGC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAT-TT--AC-CTTAAGT-------------------------------------TG..........................................................................................................................2111.00100000000001000000
....................................ATCGATCTGATGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCTGGAAATGGAGCGC..................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGCTGGAAATGGAGC....................2111.00100000000001000000
...........................................................................................................................................TAT-------TGTTTAAG-----ATTGTGGGATAAAT----------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.......................................................................................................................................................TTTAAG-----ATTGTGGGATAAAT----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGAAATGGAGCGCAAG...............2111.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGCGCAAGAGCCGTGC.......2111.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT-------------------------------------TGCCTCTAA--ATAAAGG-----T....................................................................................................2111.00100000000001000000
...........................................................................................................................................................AG-----ATTGTGGGATAAAT----------GTCAG----------------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGC-------------------------------------------------------------------------------------------------AGT-----GCATCCATAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
droSec2
T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCCGGTGAGTT--------------------------------GAGAGC-T-GGAAACATATTATCT-------TGTTTAAG-----ATTGTGGGATAAGT----------GTCAG----------------------TTAATAAGTTGAGTAATAGCA-AAAG-C-TAA-TTCCTGA----------------------------------------------------------------------------------ATTA-T---AAAGCATATCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----ACTTCCATAACTAATTT-----------------------------------------------------------------------AAGTAACATGCCATT-AA---AA--------------------ACACTTTGTCA-----CATTCAACCTAAAAGTATTTCA--AT----------------------------------------------------------------------------------------------------------GGAATGATTAT--TGATTATT-----------------AT-------------------------------------TGCCTCTAA--ATAAAGG-----TT-CCCC-A-T----TTCC----ACAC------T----GATCTCCTTGCAGAATCCCTGGCTCAGGAGCTTGAAATGGAGCGCAAGAGCCGTGCCGCCAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGCGCAAGAGCCGTGCCGC....2511.0010100
dm3
T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCCGGTGAGTT--------------------------------GAGAGC-C-TGAAACATATTATCT-------TGTTTAAG-----ATTGTGGGATAAAT----------GTCAG----------------------TTAATATGTTGAGTAATAGCA-CAAGCC-TGAAATTCGGA----------------------------------------------------------------------------------ATTA-T---AAAGGATATCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGC-------------------------------------------------------------------------------------------------AGT-----ACTTCCATAACTAATTT-----------------------------------------------------------------------AAGTAACA----ATA-AA---AA--------------------ACACATTGTCA-----CTTTCAACCTAATAGTATTTCA--AT------------------------------------GC-------------------------------------------------AAATGTTCTTGAGCAGCTTGGAATGATTATACTGATACTTTTATTTT--TC-CTTAAAT-------------------------------------TGCCTCTAA--ATAAAGA-----TT-CCCC-A-T----TTCC----ACAC------T----AATCTCCTTGCAGAATCCCTGGCTCAGGAGCTGGAAATGGAGCGCAAGAGCCGTGCCGCCAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGCGCAAGAGCCGTGCCGCC...2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCCC-A-T----TTCC----ACAC------T----AATCT..........................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGCAAGAGCCGT.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGGGCATCGATCTGATGGCCACCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T-----------------------------CCCGGCATCGACCTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GAGACC-C--GATACACACGACGT-------TGATTTAG-----ATTGCAGGGTACAT----------TCCAG------------------------------TTGAGTAATACAA-AAATGC-TGA-ATTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
C-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GGCACC-C-TGAAACATATTATAT-------TATGTTAG-----ATTGGGGGTTAAAG------TAAAGTCAG------------------------------TTTAGTAATACGG-AAAC-CTTGA-ATTCTGC----------------------------------------------------------------------------------ATTA-T---AAAGGATCTCATAG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGAAAAGT-------------------------------------------------------------------------------------------------ATAATTTCATTTCCG----------------------------------------------------------------------------------------------TAAAA---AA--------------------TCACTTTGTCA-----TATTTATCCTTA---------A--AT------------------------------------GC-------------------------------------------------AAGTGTTCTTGGGCAGCTTAGAATGATAGT--TTAATTCTCCAT-TACATC-CTTAAGT-------------------------------------TGTCTCTAA--A-AAAGG-----TT-CCCC-C-T----TTC-----CCGC------T----GCTCTCCCTACAGAATCCCTGGCCCAAGAGCTGGAAATGGAGCGCAAGAGCCGCGCCGCCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................CGATCTGATGGCCACCGGCGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
T-----------------------------CCCGGTATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAATTATTCCGGTAAGTT--------------------------------AAGAAA-A-TATAAC------------------------------------------------------TCTTTCTAATAAATAATTTCTTTCTCTAAATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGTATATAAAATATATTAAAGCTAATCCCTTAAAATCCTTTCTATAA------TTTT-GTT--T-CGATT----TTTC----CCAT-----------TCTTTCCTTACAGAATCCCTGGCCCAAGAGCTAGAGATGGAGCGCAAAAACCGTGCCGCCAATSizeHit CountTotal NormTotal
No Reads
droBia1
T-----------------------------CCGGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GAGGTC-C-TAAAATATGTCATGG-------ATTTTAGG-----GTTCTAACATA---------------CAG----------------------TAAATAGTTTGAA--------------------------------------AACA----------TTAT-------GAGACAACAGA---ACTCAG-------C------------------AGCA-GA-AAAAGTATCTTATAGAT------------------------------------TGCCATA---------CCTTC-----TTGTTTATA----------TTTAACTTTTTACC------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------TCACCTTA-----------------------------------------------------------------------------GA------------------------------------------------------------------------------------------------GCTAGA--GGC----CTTTAAAAAATCT-TTAA-----------G------AAATGTTTTTGTGGGGCCTATGT-------------A-T-AAAA-TATA----TATTTTTTCC----------------------------------CTTTCTAA--AGACATC-----TC-TTCC-A-T----TTC-----CCAT------T----TATTTCCTTGTAGAATCCCTGGCCCAGGAGCTGGAGATGGAGCGCAAGAGCCGTGCCGCCAATSizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------CCAGGAATCGATTTGATGGCCACCGGCGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------GGGAAC-C-TAAACTAAAATATAG-------TTCTTAAG-----TTAGGA-----AATGTTAAGTTA------------------------------AATATGTT-AGAAATACAA-AAAT-TT-AA-AGT--GATTTAACGTGAAAATATAAAAAAGAAATTAAT--------------------------------------------------------------------------------------------------------------------------------------------ATAAATA----------T-----------------------TTAATATCTA--------AAAC----------TA------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAAA-----------------------------------------------------------------------------AC------------------------------------------------------------------------------------------------GCTAGA--AAC----TCTGAAGAAATCGAATAA-----------A------ATATGTTTTTGTAGAGTCTTAAA-------------CTTAAGAA-AACA----TATTA----------------------------------AAATTTTTACTAA--G-ATTTG-----TTTTT-A-T-T----TTTT----TCAT------G----TTTTTCCCTATAGAATCCCTGGCCCAAGAGCTGGAGATGGAGCGCAAAAGCCGTGCCGCCAATSizeHit CountTotal NormTotal
No Reads
droEle1
T-----------------------------CCGGGCATCGATCTGATGGCCACCGGAGCCTTCTGGCAGAACTATTCCGGTGAGTT--------------------------------TGGAGC-T-TGAATCAGATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGG----------------------------------------------------------------------------------------------------------------T----------------TCAACTAAATTTATTCCTGTAAAGTGTTAAAAAGAAGATATATAATTTTTGTAAGTTTTAAAATATTTATTTAAAATAATTAAATGACAATTAAAATGACATTCAAATAAATAAAAATAGAAAGT-----GTTTCCGTAATTTGTGTTTATATTTTGTCC-TTGGTGACTAAATACTCTTCATGCAAAATGTAATAAACCTATAATCATAATCAATTATAAATACATAGCATTAAAATTAAACGCTTAGTAAATAACATGAGCGCTTTGTTAAAAGATATTTAATTTAAGAGAACCCCACAATTATTTGTTTATTGTTTAAAAATTATCAAACTTACGGTCT----------------------------------------------------GGCTTTGATCAGT------------------------TAT-TATGTCTTTTAAAT-------------------------------------TGTCTATAA--A------------T--TCC-A-A----TTTT----GCAT------TTGTCTGATTCTTTACAGAATCCCTGGCCCAAGAGCTGGAGATGGAGCGCAAAAGCCGGGCCGCCAATSizeHit CountTotal NormTotal
No Reads
droRho1
T-----------------------------TAATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTAATA-----CTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------CAT-TT--AT-TGTTAAA-------------------------------------CATTTTATA--ATACAGTTTT--TT-TT-CGA------TTTT----TTAT------T----TATTTCCTTATAGAATCACTGGCCCAAGAGCTGGAGATGGAGCGCAAAAGCCGGGCCGCCAATSizeHit CountTotal NormTotal
No Reads
droFic1
T-----------------------------CCGGGCATCGATCTGATGGCCACTGGAGCCTTCTGGCAGAACTACTCCGGTAAGTT--------------------------------GAGAGT-C-AATATAATAATACATAATACCCT----AAGTCATAATTTTATTAAA---------------CAA----------------------AA--------------------------------------------------------------AAAAT-------GTAACAACAAA---TTTCAATATCTTGATG--------A-------ACCT-C-------------------------------------AGAGAAAATGAAAATTAT-------TTTTTGGAACTTTT------------------------------------------AAATATTTTTGTTATGAATTTTAT---ATCATCTTATCTTATGCC---------------------------------------------------------------------------------------------------------------------CC-------------ATATTTTGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGC--GGT----GTTAAAAAAATCT-CCATATAAACTACTTG--------------------------AAATG-----------------------------------TCCT---------------------------------TTTTTTAT--TGA--TC-----TC-TTAC-C-AAACA---TTTTCCCATTTTTGTT----TCT-GTCTTGAAGAATCCTTGGCCCAAGAGCTGGAGATGGAGCGCAAGAGCCGAGCGGCCAATSizeHit CountTotal NormTotal
No Reads
droKik1
A-----------------------------TTTTTTAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTACCTCTTAAAAT------------------------ATTCT--ACAA------------TT-TCCC-A-A----ATATTTTCTTA------------TTATTCCTCTCAGAATCCCTGGCCCAGGAGCTGGAGATGGAGCGCAAGACGCGGGCGGCCAATSizeHit CountTotal NormTotal
No Reads
droAna3
T-----------------------------CCTGGCATCGATCTGATGGCCACCGGAGCCTTTTGGCAAAACTATTCCGGTGAGTT--------------------------------GGA--CTTAAAAATTAAATTAAAA-------ACTTAAGG-----ATT--------TTT----------TTTTA----------------------TATATATTCTGAGTA-TAG---A------------------------------------------------------AAAGTTCATA---A-------AATAGCTTTCAAAACTAGTTTTAAAATA-TA-AAAAGTATCCTTGAGATATATACTTTTGTAAAATCAAAG---------------GCAATT---------CAATC-----TTGTTTATGGGTCGTAAATATTATC---------------------------------------------------------------AC-------------------------------------------------------------------------------------------------AAT-----ACTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTAAATATAAATATAT-CCTTATAAATTATGTA----------------------------------------------------------------A-------------------------------------CTCCTCTAA--ATAAAAA---CATA-TCCC-T-T----TTCTTCT-TTTC------C----CGTATCCTTGCAGAGTCCCTAGCCCAGGAGCTGGAAATGGAGCGCAAGACCCGGGCAGCCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GCCAGTAATGGAAAAGGACCCTGGAGCTATCCTGGCATCGATCTGATGGCCACTGGAGCCTTCTGGCAAAACTATTCCGGTGAGTA--------------------------------AAG--T-T-TGAA-------------------------------------------------------------------------------------------------------------------------------------AACA----------A------------------------------------------------------------------------CAATTAGTT------------------------------------TTCTTAA---------TTTTTCATAGATGTATATA----------TTAAGTAATATACATTTTAAATATTAAATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATTTCCT------------------------------------TTTAA--ATAAAAA---TATT-TCCC-T-A----TTCTTTT-CTAC------C----CGAATCTTTACAGAGTCTCTGGCCCAGGAGCTGGAAATGGAGCGCAAGACCCGGGCCGCCAATSizeHit CountTotal NormTotal
No Reads
dp5
T-----------------------------CCGGGCATCGATCTGATGGCCACGGGGGCCTTCTGGCAGAACTATTCCGGTGAGTTTCTGAAGGGCAAATATTTCTCTATATATATTTGAGGGC-T-CAAGAG---------------------------------------------------------------------------------------------------------------------------------------------GGAAATTAGTCTCTGGAGAGACCAGA---A-------TGTGGCGG--------A-------ATCT-T-------------------------------------AGAGGGATTGAGAGG-GA-------TCTTTAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTATATTA-----ATATC-----------------------------------------------------------------------------------------------------------------------------------------------------CAG-AT--GA-CCCTT-------------------------------------------------------AA---CCTT-TCCC-A-T----TTCTTCT-GTT-------TTTT-GTGTCCCTTGCAGAATCTCTAGCCCAAGAGCTGGAAATGGAGCGCAAAACGCGTGCCGCCAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................CGATCTGATGGCCACGGGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
droPer2
T-----------------------------CCGGGCATCGATCTGATGGCCACGGGGGCCTTCTGGCAGAACTATTCCGGTGAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
A-----------------------------AAGACCATTCACTTAATTTAGACTTGAAAGTTCAGT-------------------------------------------------------------------------------------------------------------------------TTAT------------------------------GTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATCAAATCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGTCCACTTGAAAGATGTC----------------------------TA------------AT-TT-TGA------TTTT----TTAT------TTTT-ATGATCTTTATAGAGTCCCTGGCACAGGAGTTGGAAATGGAGCGTAAAACTCGCGCTGCGAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
T-----------------------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TTAC------A----ATTCTTTTTAAAGAATCCCTCGCACAGGAGCTGGAAATGGAGCGCAAGACACGTGCAGCGAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T-----------------------------CCAGGCATCGATCTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCGGGTAAGCT--TAAATAGAAAATATTTCTACAAA------------------------TTTATAT-------TATTTGCG-----ATTATATACTCTGA----------ATCCA----------------------TTCAAAAGTAAAGTAAAAGT---------------------------------------------------ATTTTTATATATCAGACAAA-------TG--AGAG--------T-------ATATATAGATATGT---ATTCACATATATAGATCTGT------AGATATATGGATATG-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTGAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTCCCATCTTCAAG---------T-CCATTTAAGTT----AACTCCT--ATCGTCGCCATCAGCTGGTCA-----------------------------------------------------------------------------------------TATAT--TT-AT-TGC------CTAT----TTCA------T----TATATTTTGAAAGAATCCCTTGCACAGGAGCTGGAAATGGAGCGCAAGACACGCGCTGCGAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T-----------------------------CCAGGCATCGATTTGATGGCCACCGGCGCCTTCTGGCAAAACTATTCGGGTAAGTT--------------------------------GAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:44 PM