dsi_14302

GGCGGAGAGGAATAGAGAGCGAGTGCAAAATTTGTCGACTTGGACGTGATGTAATTTTCGGCAGAAAAATGTTCTTTGTTTGCCCAAAAAATAACAATAAATAAATAAGAATGAAGAGCGAGGCGTAAAAAAAAAAACAATTTAAATTAAACTCAAAAACACACACAAAAAGAGAGGGTTCTGTGGGTGAGCGTGCGTGTGTGTGTGGGTGAGAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC ************************************************....(((((....))))).((((((((((((...........................))))))))))))......................................((((.(((...........((((.......))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902009 testis	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
........................GCAAAATTTGTCGACTTGGAC.............................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0
..................GCGAGTGCAAAATTTGTCGACTTGGAC.............................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................AAGAATGAAGAGCGAGGCGTAA..........................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
...................CGAGTGCAAAATTTGTCGACT..................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................CAAAATGACACTCAAAAAGAGA...........................................................................	22	3	3	0.33	1	0	0	1	0	0	0	0	0
.........................................................................................................TAAGAATGAAGGGCGAGGAC.............................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0	0
........................................TGGACGTTATGTAATT..................................................................................................................................................................................................	16	1	5	0.20	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................AGAAGAGAGCGTTCTGTGG................................................................	19	2	8	0.13	1	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................GCTTTTGGATCATTA........	15	1	17	0.06	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................AGCGGGCGTGTGTGGGTGG..........................................	19	2	19	0.05	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TGGAGCATTAATTGG...	15	1	20	0.05	1	0	0	0	0	0	0	0	1
..............................................................................................................ATGTAGAGCGAGGCGTT...........................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0	0
...........................................................................................................................................................................GATAGGGCTCTATGGGTG.............................................................	18	3	20	0.05	1	0	0	0	0	0	1	0	0
......................GTGAAAAATTTGTCG.....................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1	0	0
................................................................................................................................................................................GGTTCTATGGTTGAGGGT........................................................	18	3	20	0.05	1	0	0	0	0	0	1	0	0

CCGCCTCTCCTTATCTCTCGCTCACGTTTTAAACAGCTGAACCTGCACTACATTAAAAGCCGTCTTTTTACAAGAAACAAACGGGTTTTTTATTGTTATTTATTTATTCTTACTTCTCGCTCCGCATTTTTTTTTTTGTTAAATTTAATTTGAGTTTTTGTGTGTGTTTTTCTCTCCCAAGACACCCACTCGCACGCACACACACACCCACTCTCGCATTAAACACACGAAAACCTCGTAATAAACCGCG ************************************************....(((((....))))).((((((((((((...........................))))))))))))......................................((((.(((...........((((.......))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
.........................................................................................................................................................GTTTTTGTGTGTGTTTT................................................................................	17	0	3	0.67	2	2	0
...........................................................................................................................................................TTTTGTGTGTGTTTTT...............................................................................	16	0	16	0.06	1	1	0
.....................................................................................................................................................TTGTGTTTTTGTGTGTGTT..................................................................................	19	1	18	0.06	1	1	0
.........................................................................................................................................................GTTTTTGTGTGTGTT..................................................................................	15	0	18	0.06	1	1	0
.......................................................................................................................................................CAGTTTTTGTGTGTGTTC.................................................................................	18	2	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:26878857-26879106 +	dsi_14302	GGCG------GAGAG-----------GAA----------T--------------------AGAGAGCGAGTG---------------------------C---AAAATTTGTCGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----AGGCGTAAA---------------AA---AAAAAACAATTTAAATTAAACTCAAAAA------CACACAC---------------------------------AAAAAGAGAGGGTTCTG--------TGGGTGAGCG--------------------------------------TGCGTGTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droSec2	scaffold_31:257944-258190 +		GGCG------GAGAG-----------GAA----------T--------------------AGAGAGCGAGTG---------------------------C---AAAATTTGTCGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTT-GCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----AGGCGTAAA---------------AA---AAAAAACAATTTAAATTAAACTCAAAAA------CACACAC---------------------------------AAAAAGAGAGGGTTCTG--------TGGGCGTGCG--------------------------------------TGTGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
dm3	chr3R:27603456-27603708 +		GGCG------GAGAG-----------AGA----------T--------------------AGAGAGTGAGTG---------------------------C---AAAATCCGTAAACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GG-AAAATGTTCTTTGTTTGCCCA----AA-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----AGGCGTAAA---------------AC---AAAAACAATTTTAAATTAAACTCAAACG------CACACAC---------------------------------AAAAAGAGAGGGTTCTG--------TGGGTGAGCG--------------------------------------TGCGTGCGTGT---G----------------------------------------------------------------------------------AGTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droEre2	scaffold_4820:367057-367312 -		GGCG------GAGAG-----------GAA----------T--------------------AGAGAGCGAGTG---------------------------G---AAAATCCGTAGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----AGGCGTAAA---------------AC---AAAAACAATTTTAAATTTAATTCAAACG------CACACAC---------------------------------GAAAAGAGAGCGTTCTGTGTTGATGATGGTGAGCG--------------------------------------TGCGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droYak3	3R:28537889-28538138 +		GGCG------GAGAG-----------GAG----------T--------------------AGAGAGCGAGTG---------------------------G---AAAATCCGTAGACTGGGACGTGATGTAATTTTCG----------------GC--------A-----------GC-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----AGGCGTAAA---------------AC---AAAAACAAATTTAAATTAAATTCAAACG------CACACAC---------------------------------GAAAAGAGAGCGTTCTG--------TGGGTGAGCG--------------------------------------TGCGATTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droEug1	scf7180000409488:299730-299979 -		GTCG------GAGAG-----------AAA--------GAT------------------AGAGAGAGCGAGTG---------------------------G---AAAATCCGTAG------ACGTGATGTAATTTTCG----------------GT--------A-----------GA-AAAATGTTCTTTGTTTGGCCA----AG-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----CGGCGTAAA---------------AC---AAAAACAACATTAAATTAATTTTACACA------CAATAAC---------------------------------CAAAAGAGTGTGT-----GTTTGTGTGGGAGAGCG--------------------------------------AGTGT--GTGT---------------------------------------------------------------------------------------GTAG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTTGCGC---
droBia1	scf7180000302035:269372-269626 +		GGCG------GAGAG-----------AGA----------G--------------------AGAGGGCGAGTG---------------------------G---AAAATCCGTAGACTCGGACGTGATGTAATTTTCG----------------GC--------A-----------GC-GAAATGTTCTTTGTTTGCCCA----AG-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----CGGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACACA------CACT--C-------C-------ACGGC-------------CTGCGGAGAGCGT-----GGTGGTGTGGGTGAGCG---------------------------------------GCGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droTak1	scf7180000415712:695971-696236 +		GGCG------GAGGAG----------AGA--------GGG------------------AGAGAGAGCGAGTG------------G--------------G---AAAATCCGTAGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GCAGAAATGTTCTTTGTTTGCCCA----AAA------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGT------G-----CGGCGTGAA---------------AC---AAAAACAACATTAAATTAAATTCACTCA------CATA--C-------------------------------GCCAG---AGAA----------------------------------------------------------------------------------------------GAAGAAGGAGAGGGAGTGGTGGAGTGGTGTGGGTGAGCG-G---------------------------T-G-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droEle1	scf7180000491194:1656414-1656650 +		GGCG------GAGAG-----------AGA----------G------------------AGATAGAGGGAGTG---------------------------A---AAAATCCGT--------ACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTTACACA------CACA--C-------T-------TTCT------TGGGCCGCTAAAAGAG-------TG--------TGGATG------------------------------------------T------GTGT---------------------------------------------------------------------------------------GTGT-----------------------------------------------GTG-----GAGAGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droRho1	scf7180000779322:85114-85348 -		GGCG------CAGAG-----------AAA----------G------------------AGAGAGAGGGAGTG---------------------------G---AAAATCCGT--------ACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----AA-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACATA------CACG--A-------T-----------------TGGGCCGCTAAAAGAG-------------------------TG--------------------------------------TGCGTGTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droFic1	scf7180000454097:28897-29142 +		GGTG------GAGAG-----------AAA----------G------------------AGAGAGAGCAAGTG---------------------------G---AAAATCCGTAA------ACGTGATGTAATTTTCA----------------GC--------A-----------GAAAAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACACG------CACA--C-------A-------AAGGC-------------TGAAAGAGAA-----TG--------TGGGTGAGCG--------------------------------------GGTGTGTGTGC---------------------------------------------------------------------------------------GTGT-----------------------------------------------GAGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTAGGCGC---
droKik1	scf7180000301641:86479-86776 +		GGCG------GACAGGAGTGAGAGAGAGA----------C------------------AGAGAAAG------AAAGCGGAGGTAGCGAAACAGAGAG--A---CGAA---------TGCGACGTGATGTAATTTTCG----------------TT--------A-----------GCAAAAATGTTCTTTGTTTGCCCA----AA-------AAAAT----------AAT--AAT----AAATAAATAA--GAA------------------TGAAGAGAGCAGCAG-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACATA------CTTG--C-------C-------ACGGC----------------------------TG--------TGGGTGTGCG--------------------------------------TGCGTGCGTGT---GTTTGTGCGAAAGAGAGTATGAAGG-----------------------------------------------------------------------------------------------------------AGAGGGAGCGGGAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGT---
droAna3	scaffold_12911:3481800-3482073 -		GGTG------GAGAG-----------AGC----------CAGAGACGGGACCCGGGAG-GAGAGAGAGAGAG---------------------------C---AGGATAGCT--------ACGTGATGTAATTTTGG----------------GG--------A-----------GA-AAAATGTTCTTTGTTTGACTA----AAAGAA--AAAAAT----------AAC--AAT----AAATAAATAA--GAA------------------CGGAGAGC------G-----TAGAGTAAA---------------AC---AAAAACAACATAAAATTAAATTCATGCA------CACG--T-------C-------CCGTT----T------GCG-----AGAA-----TG--------TGGGTGAGTG--GTAA---AGA------GAGAGAGAGAGGGTGG----TGCGTACGTGT---G----------------------------------------------------------------------------------TG------------------------------------------------------------------TGTGTGTGCTTTTGGAGCATTATTTGGCGC---
droBip1	scf7180000396640:345450-345696 -		GGTG------GAGAG-----------AGC----------AAGAGACGGGACCCGGGAG---GAGAGAGAGAG---------------------------C---AGGATAGGT--------ACGTGATGTAATTTTGG----------------GG--------A-----------GA-AAAATGTTCTTTGTTTGACTA----AAAGA---AAAAAT----------AAC--AAT----AAATAAATAA--GAA------------------CGGAGAGC------G-----TAGAGTAAA---------------AC---AAAAACAACATTAAATTAAATTCATACA------CACG--T-------T-------CCGTT----C------GTG-----AGAA-----TG--------TGGGTGA---------------------------GAGAGGGTGG------TTT--GTG-----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGCTTTTGGAGCATTATTTGGCGC---
dp5	2:14048611-14048975 +		GGTG-------AGAGTGGTGT---AGTGTTC-GTGGAG-G------------------GG------------AGTGTGCGGGTAGGGA------GTGTGGAATAG--------GACAGCGACGTGATGTAATTTTCG----------------GG--------A-----------GAAAAAATGTTCTTTGTTTGCCTA----AAAACACACAAAAA----------AAC--AAT----AAATAAATAA--GAACTAGAGAGGAAGAGAGGGTGAAGAGGG--AGAG-----CAGCGTAAA---------------AC---AAAAACAACATAAAATTAAATTCACTCA------CACACCCGTACACATTTCCGCAGCGGCTGAT-TCGGCG--------------TT------------------GCG--------------------------------------TGAGT--GTGT-GTG-----------------------------------------------GCTGAGCG-G---------------------------T-GAGCGACCGCCACCGACACCGACGAAGCGAGCGAGCAGCCTATAGAGAGGGA----GAGCATTATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droPer2	scaffold_0:6392872-6393239 -		GGTG------GAGAGTGGTGT---AGTGTACTGTGGAGGG------------------GG------------AGTGTGCGGGTAGGGA------GTGTGGAATAG--------GACAGCGACGTGATGTAATTTTCG----------------GG--------A-----------GAAAAAATGTTCTTTGTTTGCCTA----AAAACACACAAAAA----------AAC--AAT----AAATAAATAA--GAACTAGAGAGGAAGAGAGGGTGAAGAGGG--AGAG-----CAGCGTAAA---------------AC---AAAAACAACATAAAATTAAATTCACTCA------CACACCCGTACACATTTCCGCAGCGGCTGAT-TCGGCG--------------TT------------------GCG--------------------------------------TGAGT--GTGT-GTG-----------------------------------------------ACTGAGCG-G---------------------------T-GAGCGACCGACACCGACACCGACGAAGCCAGCGAGAAGCCTATAGAGAGGGA----GAGCATTATTTGTGTGCTTTTGGAGCATTATTTGGCGC---
droWil2	scf2_1100000004943:9155434-9155771 -		AGGATTTGCATTTAG-----------GAT----------T--------------------TGTG-CCGGGTT---------------------------G---ACGGTCTAGTGACAGCCACATGATGTAATTCTTAATCTCTCAATTTAGTGGCAAACCAACAAAAAAAAAATAAG-AATATGTTCTTTGTTTAACAA----A-----------------------------AT----AAATAAATAGAGAAA--TG---------AAAC-ACAAAAAC------ACAATCTAAAGTAAA---------------AC---AAAAACACAATTTAATTAAATTCACATA------TTAG--G-------C-------AA--------------G-------CGAGAGATTGACGTA-----------GAG--AGAA---AGA------G----AGAGAGTGTGG------AAA--GTGT------------------------------------------------GTGAAGAAGAGAGTAAGAGTAATAAAA---ATGAAGAAGGTAG-----------------------------------------------GTAG----GCGGGTAAAGGGGAGGCTTTTGGAGCACTATTTGGCGC---
droVir3	scaffold_13047:11136415-11136638 +		--------------------------------------------------------------------------------------------------------------------------GTGATGTAATTTTTG----------------AG--------A-----AAA---GCAAAAATCTTCTTTGTTTGGCTA----ACAAAAAAGAAAAT----------AAT--AAC----AAATAAATATAAGCA------------------GGAAAAGA------A-----CAACGTAAA---------------ACGGCAACAACAACATCAAATTAAATTCACACT------GTCG--C-------T-------G--------------------------------TG--------TG--T---------ATGTAA--GTGTGCG----AGAGAGTGTTG-GTGT------GCGTG-------TGTG-----------------------------------------------------AGTGCTCATATGCTC-----------------------------------------------------------------------------ACATATATTT-GGCCACTGCTCGGCTCCCT
droMoj3	scaffold_6540:30622687-30622946 -		--------------------------------------------------------------------------------------------------------------------------GTGATGTAATTTTTG----------------GG--------A-----AAA---GCAAAAATCTTCTTTGTTTGGCTA----CAAAAAAAAAAAATAAAAAAAAAAAAA--AACAAATAAATAAATATAAGCA------------------GGAAAAGA------A-----CAACGTAAA---------------ACGGCAACAACAACATTAAATTAAATTCACACT------GTCG--C-------C-------G-----------------------------TGATG--------TGTGTGTGTGTGGTATGTAAGTGTGTGCG----GGAGAGTGTTTGTTGTGCGTGTGTATA-------TGTG---------------------------------------------------AGAGTGCTCATATGCTCGC-----------------------------------------------------------------------------ACATATTT-GGCCAGTGTTCGGCTC---
droGri2	scaffold_14624:1028940-1029210 +		-------------------------------------------------------------------------------------------------------------------------CGTGATGTAATTTTTATT-TCT--TTTT--CGGCT-------A-----TAA---GCAAAAATCTTCTTTGTTTGTCTTCGAAAG-AAA--AAAAAA----------AACAAAAT----AAATAAATATAAGCA--TG--------------TGAAAAGA------A-----CAACGTAAAACGATAACAACAACGAC---AAGAACAACATTAAATTAAATTCACGGGAGAGGCGTGA--A-------T-------A--------------------------------TG--------TA--T---------ATGTAT--GTGTGCG----TGTTAGTATT-------CATGTGTATG-------TGTG-----------------------------------------------------AGT----ATGTGGTCAG--------------------------------------------------------ACAT----ACATTTAACAGCGGCTCCTCAGCGCCAGCCTTTGCCCC---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGCG------GAGAG-----------GAA----------T--------------------AGAGAGCGAGTG---------------------------C---AAAATTTGTCGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----AGGCGTAAA---------------AA---AAAAAACAATTTAAATTAAACTCAAAAA------CACACAC---------------------------------AAAAAGAGAGGGTTCTG--------TGGGTGAGCG--------------------------------------TGCGTGTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................G---------------------------C---AAAATTTGTCGACTTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCGAGTG---------------------------C---AAAATTTGTCGACTTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AA--GAA------------------TGAAGAGC------G-----AGGCGTAA..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................CGAGTG---------------------------C---AAAATTTGTCGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGCG------GAGAG-----------GAA----------T--------------------AGAGAGCGAGTG---------------------------C---AAAATTTGTCGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTT-GCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----AGGCGTAAA---------------AA---AAAAAACAATTTAAATTAAACTCAAAAA------CACACAC---------------------------------AAAAAGAGAGGGTTCTG--------TGGGCGTGCG--------------------------------------TGTGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................AAAATTTGTCGACTTGGACGTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................AATAA--GAA------------------TGAAGAGC------G-----AGGC..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

GGCG------GAGAG-----------AGA----------T--------------------AGAGAGTGAGTG---------------------------C---AAAATCCGTAAACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GG-AAAATGTTCTTTGTTTGCCCA----AA-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----AGGCGTAAA---------------AC---AAAAACAATTTTAAATTAAACTCAAACG------CACACAC---------------------------------AAAAAGAGAGGGTTCTG--------TGGGTGAGCG--------------------------------------TGCGTGCGTGT---G----------------------------------------------------------------------------------AGTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................AATAA--GAA------------------TGAAGAGC------G-----AGGC..................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ACACAC---------------------------------AAAAAGAGAGGGTTC................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ACGTGATGTAATTTTCG----------------GC--------A-----------GG-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GAGAGTGAGTG---------------------------C---AAAATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............G-----------AGA----------T--------------------AGAGAGTGAGTG---------------------------C---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCG--------------------------------------TGCGTGCGTGT---G----------------------------------------------------------------------------------AGTG.................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCG--------------------------------------TGCGTGCGTGT---G----------------------------------------------------------------------------------AGTGG-----------------------------------------------.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCTG--------TGGGTGAGCG--------------------------------------TGCG..................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................ATGTTCTTTGTTTGCCCA----A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AGAGAGTGAGTG---------------------------C---AAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTCTG--------TGGGTGAGCG--------------------------------------......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTGATGTAATTTTCG----------------GC--------A-----------GG-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................TAA--GAA------------------TGAAGAGC------G-----AGGCGTT...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCG--------------------------------------TGCGTGCGTGT---G----------------------------------------------------------------------------------.....................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGCG------GAGAG-----------GAA----------T--------------------AGAGAGCGAGTG---------------------------G---AAAATCCGTAGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----AGGCGTAAA---------------AC---AAAAACAATTTTAAATTTAATTCAAACG------CACACAC---------------------------------GAAAAGAGAGCGTTCTGTGTTGATGATGGTGAGCG--------------------------------------TGCGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------------TGCGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----.........................................	18	2	0.50	1	0	0	0	0	0	1	0

droYak3

GGCG------GAGAG-----------GAG----------T--------------------AGAGAGCGAGTG---------------------------G---AAAATCCGTAGACTGGGACGTGATGTAATTTTCG----------------GC--------A-----------GC-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----AGGCGTAAA---------------AC---AAAAACAAATTTAAATTAAATTCAAACG------CACACAC---------------------------------GAAAAGAGAGCGTTCTG--------TGGGTGAGCG--------------------------------------TGCGATTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................GTGATGTAATTTTCG----------------GC--------A-----------GC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCG--------------------------------------TGCGATTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGC.....................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGC.....................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCTTTTGGAGCATT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCTG--------TGGGTGAGCG--------------------------------------TGCGATTGTG............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
............................................................AGAGAGCGAGTG---------------------------G---AAAATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTCG------GAGAG-----------AAA--------GAT------------------AGAGAGAGCGAGTG---------------------------G---AAAATCCGTAG------ACGTGATGTAATTTTCG----------------GT--------A-----------GA-AAAATGTTCTTTGTTTGGCCA----AG-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----CGGCGTAAA---------------AC---AAAAACAACATTAAATTAATTTTACACA------CAATAAC---------------------------------CAAAAGAGTGTGT-----GTTTGTGTGGGAGAGCG--------------------------------------AGTGT--GTGT---------------------------------------------------------------------------------------GTAG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTTGCGC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCG------GAGAG-----------AGA----------G--------------------AGAGGGCGAGTG---------------------------G---AAAATCCGTAGACTCGGACGTGATGTAATTTTCG----------------GC--------A-----------GC-GAAATGTTCTTTGTTTGCCCA----AG-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGC------G-----CGGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACACA------CACT--C-------C-------ACGGC-------------CTGCGGAGAGCGT-----GGTGGTGTGGGTGAGCG---------------------------------------GCGT--GTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCG------GAGGAG----------AGA--------GGG------------------AGAGAGAGCGAGTG------------G--------------G---AAAATCCGTAGACTTGGACGTGATGTAATTTTCG----------------GC--------A-----------GCAGAAATGTTCTTTGTTTGCCCA----AAA------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TGAAGAGT------G-----CGGCGTGAA---------------AC---AAAAACAACATTAAATTAAATTCACTCA------CATA--C-------------------------------GCCAG---AGAA----------------------------------------------------------------------------------------------GAAGAAGGAGAGGGAGTGGTGGAGTGGTGTGGGTGAGCG-G---------------------------T-G-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCG------GAGAG-----------AGA----------G------------------AGATAGAGGGAGTG---------------------------A---AAAATCCGT--------ACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTTACACA------CACA--C-------T-------TTCT------TGGGCCGCTAAAAGAG-------TG--------TGGATG------------------------------------------T------GTGT---------------------------------------------------------------------------------------GTGT-----------------------------------------------GTG-----GAGAGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCG------CAGAG-----------AAA----------G------------------AGAGAGAGGGAGTG---------------------------G---AAAATCCGT--------ACGTGATGTAATTTTCG----------------GC--------A-----------GA-AAAATGTTCTTTGTTTGCCCA----AA-------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACATA------CACG--A-------T-----------------TGGGCCGCTAAAAGAG-------------------------TG--------------------------------------TGCGTGTGTGT---------------------------------------------------------------------------------------GTGG-----------------------------------------------GTGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGTG------GAGAG-----------AAA----------G------------------AGAGAGAGCAAGTG---------------------------G---AAAATCCGTAA------ACGTGATGTAATTTTCA----------------GC--------A-----------GAAAAAATGTTCTTTGTTTGCCCA----A--------AAAAT----------AAC--AAT----AAATAAATAA--GAA------------------TAAAGAGC------G-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACACG------CACA--C-------A-------AAGGC-------------TGAAAGAGAA-----TG--------TGGGTGAGCG--------------------------------------GGTGTGTGTGC---------------------------------------------------------------------------------------GTGT-----------------------------------------------GAGA----GAGCGTAATTTGTGTGCTTTTGGAGCATTATTAGGCGC---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCG------GACAGGAGTGAGAGAGAGA----------C------------------AGAGAAAG------AAAGCGGAGGTAGCGAAACAGAGAG--A---CGAA---------TGCGACGTGATGTAATTTTCG----------------TT--------A-----------GCAAAAATGTTCTTTGTTTGCCCA----AA-------AAAAT----------AAT--AAT----AAATAAATAA--GAA------------------TGAAGAGAGCAGCAG-----CAGCGTAAA---------------AC---AAAAACAACATTAAATTAAATTCACATA------CTTG--C-------C-------ACGGC----------------------------TG--------TGGGTGTGCG--------------------------------------TGCGTGCGTGT---GTTTGTGCGAAAGAGAGTATGAAGG-----------------------------------------------------------------------------------------------------------AGAGGGAGCGGGAGCGTAATTTGTGTGCTTTTGGAGCATTATTTGGCGT---	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGTG------GAGAG-----------AGC----------CAGAGACGGGACCCGGGAG-GAGAGAGAGAGAG---------------------------C---AGGATAGCT--------ACGTGATGTAATTTTGG----------------GG--------A-----------GA-AAAATGTTCTTTGTTTGACTA----AAAGAA--AAAAAT----------AAC--AAT----AAATAAATAA--GAA------------------CGGAGAGC------G-----TAGAGTAAA---------------AC---AAAAACAACATAAAATTAAATTCATGCA------CACG--T-------C-------CCGTT----T------GCG-----AGAA-----TG--------TGGGTGAGTG--GTAA---AGA------GAGAGAGAGAGGGTGG----TGCGTACGTGT---G----------------------------------------------------------------------------------TG------------------------------------------------------------------TGTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTACGTGT---G----------------------------------------------------------------------------------TG------------------------------------------------------------------TGTGTGTGC........................	23	1	1.00	1	1	0	0	0	0	0
..........................AGC----------CAGAGACGGGACCCGGGAA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droBip1

GGTG------GAGAG-----------AGC----------AAGAGACGGGACCCGGGAG---GAGAGAGAGAG---------------------------C---AGGATAGGT--------ACGTGATGTAATTTTGG----------------GG--------A-----------GA-AAAATGTTCTTTGTTTGACTA----AAAGA---AAAAAT----------AAC--AAT----AAATAAATAA--GAA------------------CGGAGAGC------G-----TAGAGTAAA---------------AC---AAAAACAACATTAAATTAAATTCATACA------CACG--T-------T-------CCGTT----C------GTG-----AGAA-----TG--------TGGGTGA---------------------------GAGAGGGTGG------TTT--GTG-----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGTG-------AGAGTGGTGT---AGTGTTC-GTGGAG-G------------------GG------------AGTGTGCGGGTAGGGA------GTGTGGAATAG--------GACAGCGACGTGATGTAATTTTCG----------------GG--------A-----------GAAAAAATGTTCTTTGTTTGCCTA----AAAACACACAAAAA----------AAC--AAT----AAATAAATAA--GAACTAGAGAGGAAGAGAGGGTGAAGAGGG--AGAG-----CAGCGTAAA---------------AC---AAAAACAACATAAAATTAAATTCACTCA------CACACCCGTACACATTTCCGCAGCGGCTGAT-TCGGCG--------------TT------------------GCG--------------------------------------TGAGT--GTGT-GTG-----------------------------------------------GCTGAGCG-G---------------------------T-GAGCGACCGCCACCGACACCGACGAAGCGAGCGAGCAGCCTATAGAGAGGGA----GAGCATTATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................ACATTTCCGCAGCGGCTGAT-T......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AT-TCGGCG--------------TT------------------GCG--------------------------------------TGAGT--GTG............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GTGTTC-GTGGAG-G------------------GG------------AGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................G--------------TT------------------GCG--------------------------------------TGAGT--GTGT-GTG-----------------------------------------------G.......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CGGCTGAT-TCGGCG--------------TT------------------GCG--------------------------------------T.....................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------------------------------------TGAGT--GTGT-GTG-----------------------------------------------GCTGAGT.................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CCGTACACATTTCCGCAGCGG.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................GTAGGGA------GTGTGGAATAG--------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................GAG-G------------------GG------------AGTGTGCGGGTAGGGA------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TACACATTTCCGCAGCGGCTG..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGTG------GAGAGTGGTGT---AGTGTACTGTGGAGGG------------------GG------------AGTGTGCGGGTAGGGA------GTGTGGAATAG--------GACAGCGACGTGATGTAATTTTCG----------------GG--------A-----------GAAAAAATGTTCTTTGTTTGCCTA----AAAACACACAAAAA----------AAC--AAT----AAATAAATAA--GAACTAGAGAGGAAGAGAGGGTGAAGAGGG--AGAG-----CAGCGTAAA---------------AC---AAAAACAACATAAAATTAAATTCACTCA------CACACCCGTACACATTTCCGCAGCGGCTGAT-TCGGCG--------------TT------------------GCG--------------------------------------TGAGT--GTGT-GTG-----------------------------------------------ACTGAGCG-G---------------------------T-GAGCGACCGACACCGACACCGACGAAGCCAGCGAGAAGCCTATAGAGAGGGA----GAGCATTATTTGTGTGCTTTTGGAGCATTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................GAGAGGGTGAAGAGGG--AGA............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
..........................................................................TGTGCGGGTAGGGA------GTGTGGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GTGT-GTG-----------------------------------------------ACTGAGCG-G---------------------------...................................................................................................	18	1	1.00	1	0	0	0	0	0	1
............................................................................TGCGGGTAGGGA------GTGTGGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................TGAT-TCGGCG--------------TT------------------GCG--------------------------------------TGAGT--...............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT-GTG-----------------------------------------------ACTGAGCG-G---------------------------T-GAG..............................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

AGGATTTGCATTTAG-----------GAT----------T--------------------TGTG-CCGGGTT---------------------------G---ACGGTCTAGTGACAGCCACATGATGTAATTCTTAATCTCTCAATTTAGTGGCAAACCAACAAAAAAAAAATAAG-AATATGTTCTTTGTTTAACAA----A-----------------------------AT----AAATAAATAGAGAAA--TG---------AAAC-ACAAAAAC------ACAATCTAAAGTAAA---------------AC---AAAAACACAATTTAATTAAATTCACATA------TTAG--G-------C-------AA--------------G-------CGAGAGATTGACGTA-----------GAG--AGAA---AGA------G----AGAGAGTGTGG------AAA--GTGT------------------------------------------------GTGAAGAAGAGAGTAAGAGTAATAAAA---ATGAAGAAGGTAG-----------------------------------------------GTAG----GCGGGTAAAGGGGAGGCTTTTGGAGCACTATTTGGCGC---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTTTTGGAGCACTATTTG.......	21	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACGTA-----------GAG--AGAA---AGA------..........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTAG-----------------------------------------------GTAG----GCGGGTAAAGGGGA...........................	26	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAA---ATGAAGAAGGTAG-----------------------------------------------GTAG----GC.......................................	28	1	1.00	1	0	0	1	0	0
....TTTGCATTTAG-----------GAT----------T--------------------TGTG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAA---ATGAAGAAGGTAG-----------------------------------------------GTAG----G........................................	24	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGAGAGTAAGA.........................................................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

--------------------------------------------------------------------------------------------------------------------------GTGATGTAATTTTTG----------------AG--------A-----AAA---GCAAAAATCTTCTTTGTTTGGCTA----ACAAAAAAGAAAAT----------AAT--AAC----AAATAAATATAAGCA------------------GGAAAAGA------A-----CAACGTAAA---------------ACGGCAACAACAACATCAAATTAAATTCACACT------GTCG--C-------T-------G--------------------------------TG--------TG--T---------ATGTAA--GTGTGCG----AGAGAGTGTTG-GTGT------GCGTG-------TGTG-----------------------------------------------------AGTGCTCATATGCTC-----------------------------------------------------------------------------ACATATATTT-GGCCACTGCTCGGCTCCCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................CATCAAATTAAATTCACACT------GTCG--C-------T-------G--------------------------------T...............................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................T-------G--------------------------------TG--------TG--T---------ATGTAA--GTGTGCG----A....................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--------------------------------------------------------------------------------------------------------------------------GTGATGTAATTTTTG----------------GG--------A-----AAA---GCAAAAATCTTCTTTGTTTGGCTA----CAAAAAAAAAAAATAAAAAAAAAAAAA--AACAAATAAATAAATATAAGCA------------------GGAAAAGA------A-----CAACGTAAA---------------ACGGCAACAACAACATTAAATTAAATTCACACT------GTCG--C-------C-------G-----------------------------TGATG--------TGTGTGTGTGTGGTATGTAAGTGTGTGCG----GGAGAGTGTTTGTTGTGCGTGTGTATA-------TGTG---------------------------------------------------AGAGTGCTCATATGCTCGC-----------------------------------------------------------------------------ACATATTT-GGCCAGTGTTCGGCTC---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................AAAAAAAAAAATAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droGri2

-------------------------------------------------------------------------------------------------------------------------CGTGATGTAATTTTTATT-TCT--TTTT--CGGCT-------A-----TAA---GCAAAAATCTTCTTTGTTTGTCTTCGAAAG-AAA--AAAAAA----------AACAAAAT----AAATAAATATAAGCA--TG--------------TGAAAAGA------A-----CAACGTAAAACGATAACAACAACGAC---AAGAACAACATTAAATTAAATTCACGGGAGAGGCGTGA--A-------T-------A--------------------------------TG--------TA--T---------ATGTAT--GTGTGCG----TGTTAGTATT-------CATGTGTATG-------TGTG-----------------------------------------------------AGT----ATGTGGTCAG--------------------------------------------------------ACAT----ACATTTAACAGCGGCTCCTCAGCGCCAGCCTTTGCCCC---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_14302

3r:26878907-26879056 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.0	-17.8	-17.5