ID:

dsi_14284

 Coordinate:

3r:10100163-10100312 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.6 -31.5 -31.5

Flybase annnotation

exon [3r_10100093_10100162_-]; CDS [3r_10100093_10100162_-]; intron [3r_10100163_10102175_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAATGAGTTTCGCAAAGTAAAGTTTTTCCATTCAGAATTTATGTTTTTGCAGTCGGGCAAGAGCTGAAGTTCGGTGCATTTGACTGCTTCAACTCTTGCCTGCTATTGTAGCCACTTTTTGTAGCTTGCTCTCCACTGAATATTAAGCACTTAACTAACTTAACTATTTTACCTCTTTCCCTTCCTCAATCAATCAAAAGGCTGAGGCTCGTGCTGAGTTCGCTGAACGCTCCGTTCAGAAGTTGCAGAA
**************************************************((.((((((((((.((((((..(((.......))))))))).))))))))))))...(((((.((.....)).)).)))........((((((((((...........))))).)))))...............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
......................................................................................................................................................................................................................................TCCGTTCAGTTGTTGCAG.. 18 2 13 4.46 58 15 0 23 0 20 0 0 0 0 0
..................................................................................................................................................................................................................GTGCTGAGTTCGCTGAACGCT................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGAGTTCGCTGAACGCTCCGTTCAGA.......... 26 0 1 3.00 3 0 1 0 0 0 0 2 0 0 0
...................................................................................................................................................................................................AGGAGGCTGAGGCTCGTGCT................................... 20 2 1 3.00 3 0 0 1 0 2 0 0 0 0 0
.................................................................................................................................................................................................................CGTGCTGAGTTCGCTGAA....................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGAGGCTCGTGCTGAGTTCGCTGAACGCT................... 29 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0
.......................................................................................................................................................................................................................GAGTTCGCTGAACGCTCCG................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TCGTGCTGAGTTCGCTGAACGC.................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGCTCGTGCTGAGTTCGCT.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCGTGCTGAGTTCGCTGAACGCTCCGTT.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................TTTGCAGTCGGGCAAGAGCT......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTCCGTTCAGAAGTTGCAG.. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................GAATTTATGTTTTTTCAGTCGGGCAAGA............................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGTGCTGAGTTCGCTGAACG..................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGTTCGCTGAACGCTC.................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGCTGAGTTCGCTGAACGCTC.................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCTCGTGCTGAGTTCGCTGA........................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGTTCGCTGAACGCT................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................CTTCAACTCTTGCCTGCTATT............................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................TCGTGCTGAGTTCGCTGAA....................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................CGTGCTGAGTTCGCTGAACGCTCCGTT.............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCTGAGTTCGCTGAACGCTCCGTT.............. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......TTTCGCAGAGTATAGTTTT................................................................................................................................................................................................................................ 19 2 3 0.67 2 0 0 0 0 0 2 0 0 0 0
.............................................................................................................................................................................TCTTACCCTTCCTCGATCA.......................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................GTAGATTGCTCTCCA................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................ATTCGGCACTTCACTAACTT......................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GCCACTTTTGGTAGCT............................................................................................................................ 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GTTCATAAGTTGCAG.. 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................CCTTCCTCAATCAAGAA...................................................... 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0
..........................................................................TGTATTTGACTGATTCAA.............................................................................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................TAGCTGGCTCTCTCCTGAA.............................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0
...............................................................CTGAAGTTCGGTGGTTT.......................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................CTGAACGCCTCTTTCAGAA......... 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................AGACGGGCAACAGCTGA....................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CTTACTCAAAGCGTTTCATTTCAAAAAGGTAAGTCTTAAATACAAAAACGTCAGCCCGTTCTCGACTTCAAGCCACGTAAACTGACGAAGTTGAGAACGGACGATAACATCGGTGAAAAACATCGAACGAGAGGTGACTTATAATTCGTGAATTGATTGAATTGATAAAATGGAGAAAGGGAAGGAGTTAGTTAGTTTTCCGACTCCGAGCACGACTCAAGCGACTTGCGAGGCAAGTCTTCAACGTCTT
**************************************************((.((((((((((.((((((..(((.......))))))))).))))))))))))...(((((.((.....)).)).)))........((((((((((...........))))).)))))...............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..........................................................................................................................................................................TGGAGAAAGGGACGGGGATAGT.......................................................... 22 3 3 0.67 2 2 0 0 0 0 0
..........................................................................................................................................................................TGGAGAAAGGGAAGGGGATAAT.......................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................TGGAGAAAGGGAAGGGGATGGT.......................................................... 22 3 5 0.20 1 1 0 0 0 0 0
...................................................................................................................AACAACATCGAGCGAGGGGT................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0
.........................................................................................................................................................................................AGTTAGTTAGTTTTC.................................................. 15 0 10 0.10 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................ACTTGCGGGACAAGTCT.......... 17 2 11 0.09 1 0 0 0 0 1 0
.................................................................................................................................................................................................AGTTTTCCGAATCAGAG........................................ 17 2 15 0.07 1 0 0 0 0 0 1
...................................................................TCACGCCACGTAAGCTG...................................................................................................................................................................... 17 2 15 0.07 1 0 1 0 0 0 0
...................................................................................................................AAAAACATCGAGTGAGCGGT................................................................................................................... 20 3 18 0.06 1 0 0 0 1 0 0
.....................................................................................................................................................................................AAGGAGGTAGTTAGT...................................................... 15 1 19 0.05 1 0 0 0 1 0 0

Generated: 04/24/2015 at 10:26 AM