ID:

dsi_14278

 Coordinate:

2r:5434456-5434565 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.9 -10.8 -10.8 -10.8

Flybase annnotation

intron [2r_5434608_5434803_-]; CDS [2r_5434566_5434607_-]; exon [2r_5434566_5434607_-]; exon [2r_5434325_5434455_-]; CDS [2r_5434325_5434455_-]; intron [2r_5434456_5434565_-]

No Repeatable elements found

Sense Strand Reads

--------##########################################--------------------------------------------------------------------------------------------------------------##################################################
CCAAACAGTTTTGTGTAAACGTTATGTTCGTGAAGAAAAATTTACTGGCGGTAATGATCAAATCGAATTGTTCCATTACATAAGCATATTAGTAAACTCTAACTAGTAACCTTTAGCGTCTGTTTCGGTCTCTATACTAACACATTTTTTATCACTGCAGTCCGGGGATCTAACGCCCGTAGAGGACGCCACCAATGTGACGCCACCGGC
**************************************************.................((((...........((....((((((.........(((..(((...(((....)))..)))..)))))))))....))..........))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR1275483
Male prepupae		 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
.....................................................................................................ACTGGTAACCTTTGGCGTCTG........................................................................................ 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACTACAGTCCGACGATCTAA..................................... 20 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0
......................TATGTTCGTGAAGAA............................................................................................................................................................................. 15 0 3 1.33 4 0 0 4 0 0 0 0 0 0 0
...........................................ACTGGCGGTTATGATCAAAACG................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........TCTGTAAACTTTTTGTTCGTGAA................................................................................................................................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................CCTTTAGCGTCTGTTTCGGTCT............................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................ACTACAGTCCGACGATCTA...................................... 19 3 14 0.50 7 6 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................CTACAGTCCGAGGATCTGAC.................................... 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.....................TTATGGTCGTGAAAAAAAA.......................................................................................................................................................................... 19 2 8 0.25 2 1 0 1 0 0 0 0 0 0 0
......................TATGTGCGTGAGGAAAAA.......................................................................................................................................................................... 18 2 14 0.21 3 0 0 2 0 0 0 0 1 0 0
.....................TTATGTTCGTGAAGCA............................................................................................................................................................................. 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...........................................ACCGGAGGTAATGATCA...................................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.....................................AAATCTACTGGTGGTACTGA......................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................ACTACAGTCCGAGGATC........................................ 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................AACCTTTATCGTCGGTTC..................................................................................... 18 3 20 0.15 3 0 1 0 0 0 0 0 0 2 0
.........................................................................................................................................................ACTACAGTCCGCGGATC........................................ 17 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AACACTACAGTCCGGAGATC........................................ 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
......................TATGTGCGTGAGGAAAA........................................................................................................................................................................... 17 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................TCACTACAGTCCGACGATC........................................ 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
......................TATGTGCGTGAGGAAAAAAT........................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................AACGTTATGATCGGGA................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TAAGGACCGTAGAGG......................... 15 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGTTTGTCAAAACACATTTGCAATACAAGCACTTCTTTTTAAATGACCGCCATTACTAGTTTAGCTTAACAAGGTAATGTATTCGTATAATCATTTGAGATTGATCATTGGAAATCGCAGACAAAGCCAGAGATATGATTGTGTAAAAAATAGTGACGTCAGGCCCCTAGATTGCGGGCATCTCCTGCGGTGGTTACACTGCGGTGGCCG
**************************************************.................((((...........((....((((((.........(((..(((...(((....)))..)))..)))))))))....))..........))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................................CGTCAGTCCCCTAGCTTG.................................... 18 2 3 69.33 208 160 31 16 0 0 1 0
............................................................................................................................................................CGTCAGTCCCCTAGCTTGGG.................................. 20 3 2 6.00 12 4 6 2 0 0 0 0
............................................................................ATGAATTGGTATAAGCATTTGA................................................................................................................ 22 3 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................CCCCAAGTTTGCGGGCATTTCC......................... 22 3 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................CAGAGATATGAATGTGT.................................................................. 17 1 2 1.00 2 0 0 0 1 1 0 0
............................................................................................................................................................CGTCAGTCCCCTAGATTG.................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................CCCAAGTTTGCGGGCATTTCC......................... 21 3 2 1.00 2 0 2 0 0 0 0 0
..........................................................................................................................................................CACGTCAGTCCCCTAGCTTG.................................... 20 3 4 0.50 2 1 1 0 0 0 0 0
...................................................................................................................................................AAATAGTAACGTCAGGCC............................................. 18 1 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................CCCGTCAGGCCCCTAGCTTG.................................... 20 3 4 0.25 1 1 0 0 0 0 0 0
..............................................................AGCAAAACAAGGTAATG................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0
...............ATTTGCAAAACAAGC.................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/23/2015 at 02:24 PM