ID:

dsi_14267

 Coordinate:

3r:4267184-4267333 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.3 -7.8 -7.7 -7.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy9-I_Dya-intLTRGypsy-
mature
  1. 2l:17614500-17614524 +
  2. dsi_14267  3r:4267192-4267216 -
star

Sense Strand Reads

ATTCACATCGATGTAACAGGGAAATTAAGTGACAAGAGTGACCAGAAGGAGTATGTAATTGTTCAAGTATACGCTTTTACCAACTATGTCTATCTTAGGCATAGCCTTAAATTAGACAGGAAAGTTTAGTCAATTCTGTTCAGACCAAAAAATAAACTTGCACTTGATTGCCACCGGTGCTAGTAGAGCTAATGGTCAAGTGGATCGAACCATGAGCTCATTGAAAAATATGTTAACGGCGGTTGAAACT
****************************************************************************************************************************((...((........................(((.((((.((........)))))).))).))...))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
..................................AGAGTGACCAGAAGGAC....................................................................................................................................................................................................... 17 1 1 4.00 4 4 0 0 0 0 0 0 0
.................................AAGAGTGACCAGAAGGAC....................................................................................................................................................................................................... 18 1 1 3.00 3 2 0 0 0 1 0 0 0
.......................................................................................................................................................................TTGCCACCGGTGCTAGTAGAGCTAA.......................................................... 25 0 2 2.50 5 3 1 0 0 0 1 0 0
...................................GAGTGACCAGAAGGAC....................................................................................................................................................................................................... 16 1 3 1.67 5 3 1 1 0 0 0 0 0
........................................................AACTGTTCAAGAATACGCT............................................................................................................................................................................... 19 2 2 1.50 3 0 0 0 3 0 0 0 0
...........................................AAAAGGAGCATGTAGTTGTT........................................................................................................................................................................................... 20 3 12 1.42 17 17 0 0 0 0 0 0 0
............................................................................................................................TTTAGTCAATTCTGTTGAGATCAGA..................................................................................................... 25 3 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................TGCCACCGGTGCTAGTAGAGCTAA.......................................................... 24 0 2 1.00 2 0 1 1 0 0 0 0 0
.................AGGGAAATTAAATGACAAGAGTGA................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0
................CAGGGAAATTAAATGACAAGAGTG.................................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................AAGGAGCATGTAGTTGTT........................................................................................................................................................................................... 18 2 8 1.00 8 8 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAGAGCTAATGGTCAAGTGGA.............................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................TGATTGCCACCGGTGCTAGTAGAGCTAA.......................................................... 28 0 2 1.00 2 1 1 0 0 0 0 0 0
............................................................................................................................TTTAGTCAATTCTATTCAGATCAGA..................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TTTAGTCAATTCTGTTCAGAC......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.................AGGGAAATTAAATGACAAGAGTGAC................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................................CAAAAGGAGCATGTAGTTGTT........................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0
........................................................................................................................................................................TGCCACCGGTGCTAGTAGAGCTAATGG....................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................TTGCCACCGGTGCTAGTAGAGCTAAA......................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TTGCCACCGGTGCTAGTAGAGC............................................................. 22 0 2 0.50 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................TGGTCAAGTGGAACGAACCATGAGCA................................ 26 2 2 0.50 1 0 0 0 0 0 0 1 0
.............................................AAGGAGCATGTAGTTGT............................................................................................................................................................................................ 17 2 17 0.35 6 6 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATGTTAAGGGCGGTT...... 15 1 3 0.33 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................AAGTGGATCGTACCA...................................... 15 1 4 0.25 1 1 0 0 0 0 0 0 0
........................................................AACTGTTCAAGAATACGC................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................AGAAATATGTTAACGG........... 16 1 4 0.25 1 0 0 1 0 0 0 0 0
..........................................CAAAAGGAGCATGTAGTTGT............................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGCTACTGGTCAATTGGA.............................................. 18 2 8 0.13 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................GTCAGGTGGATCGTAC........................................ 16 2 9 0.11 1 1 0 0 0 0 0 0 0
....................................AGTGACCAGAAGGAC....................................................................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0
.......................................................AAACTGTTCAAGAATACGCT............................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 1 0 0 0 0
.........................CAAGTGACTAGACTGACCA.............................................................................................................................................................................................................. 19 3 16 0.06 1 1 0 0 0 0 0 0 0
..................................................................................ACTATGTCTCTCTTA......................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................GTAAACGGCGGTGGTAACT 19 3 20 0.05 1 0 0 0 0 0 1 0 0
.................................AAGAGTGACAAGAACGA........................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAAGTGTAGCTACATTGTCCCTTTAATTCACTGTTCTCACTGGTCTTCCTCATACATTAACAAGTTCATATGCGAAAATGGTTGATACAGATAGAATCCGTATCGGAATTTAATCTGTCCTTTCAAATCAGTTAAGACAAGTCTGGTTTTTTATTTGAACGTGAACTAACGGTGGCCACGATCATCTCGATTACCAGTTCACCTAGCTTGGTACTCGAGTAACTTTTTATACAATTGCCGCCAACTTTGA
**********************************************************((...((........................(((.((((.((........)))))).))).))...))**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.............................................TTCCTCATACATTAACAAGTTCAT..................................................................................................................................................................................... 24 0 2 1.50 3 0 0 1 0 1 0 1 0 0
.............................................................................................................................................................................GGCCACGATCATCTCGATTACCAGT.................................................... 25 0 2 1.00 2 0 1 0 1 0 0 0 0 0
.............................................................................................................................................................................GGCCACGATCATCTCGATTACCAGTT................................................... 26 0 2 1.00 2 0 0 0 2 0 0 0 0 0
..............................................................................................................................ATCAGTTAAGACAAGTCTAGTCTT.................................................................................................... 24 2 2 1.00 2 0 2 0 0 0 0 0 0 0
...............................................................GTTCATATGCGAAAATGGTT....................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GGCCCCGATCAGCTCGATTACCAGT.................................................... 25 2 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................CAGTTAAGACAAGTCTGGTTTTTT.................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................ATCAGTTAAGACAAGTCTGGTTTTTT.................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.AGGTGTAGCTACATTGTCCCTTTAAT............................................................................................................................................................................................................................... 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CAGTTAAGACAAGTCTGGTTTTTTATT............................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................TTTACTTCACTGATCTCGCTG................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0
................................................................................................................................CAGTTAAGACAAGTCTGGTTTTTTAT................................................................................................ 26 0 2 0.50 1 0 0 0 0 0 1 0 0 0
................................................................................................................................CAGTTAAGACAAGTCTGGTTT..................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.......................................................................GCGAAAATGGTTGATTC.................................................................................................................................................................. 17 1 9 0.11 1 0 0 0 0 0 0 0 0 1
........................................................................CGAAAATGGTTGATTC.................................................................................................................................................................. 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0
.........................................................................AAAAATGGTAGATACAGGTA............................................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 11:50 PM