ID:

dsi_1425

 Coordinate:

3r:4674655-4674804 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.6 -6.6 -5.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTTTTGTATTAACAACATTTTTAACTCTCTTTCTCTTTTTTTTCTTTTGAAAAACTCCACCACCCAACAACACCACCCAACCCAACAAAAAAAAAAAAACACCAACACACCAAAACTCACACCAAAAACCAACCGAATGCTGCCAAACACACCAATGCCAATTCCAACACCACAACCGATCGCGGTCACCCATCCGCAGTAGTCGGTAAACGTAAGTTCGATGGAGGTCACCAAAATCCAGCAGATGTT
**************************************************....................................................................................................................................((((........))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................ACACCACAACCGATCGCGGTCACCC.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATGGAGGTCACCAAAATC........... 18 0 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................GCAGTAGTCGGTAAACGTAAGTT............................... 23 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................ACAACCGATCGCGGTCACC........................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................CGTAAGTGCGATGGA........................ 15 1 5 0.40 2 0 0 0 0 2 0 0
..........TGACAGCATTTTTAACTCTGTT.......................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0
................................TCTCTTTATTTTCTTTTAAAA..................................................................................................................................................................................................... 21 2 7 0.14 1 0 0 0 0 0 0 1
..........TAACATCATTTTTAAAGCTCTT.......................................................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 1 0
...................................................................................................................................................................................................TGCAGAAGTCGGTAAGCGT.................................... 19 3 13 0.08 1 0 0 0 0 1 0 0

Anti-sense strand reads

TAAAAACATAATTGTTGTAAAAATTGAGAGAAAGAGAAAAAAAAGAAAACTTTTTGAGGTGGTGGGTTGTTGTGGTGGGTTGGGTTGTTTTTTTTTTTTTGTGGTTGTGTGGTTTTGAGTGTGGTTTTTGGTTGGCTTACGACGGTTTGTGTGGTTACGGTTAAGGTTGTGGTGTTGGCTAGCGCCAGTGGGTAGGCGTCATCAGCCATTTGCATTCAAGCTACCTCCAGTGGTTTTAGGTCGTCTACAA
**************************************************....................................................................................................................................((((........))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 M053
female body
..................AAAAATTGAGAGAAA......................................................................................................................................................................................................................... 15 0 3 4.67 14 7 6 0 0 1 0 0 0 0 0
..................AAAAATTGAGAGAAAG........................................................................................................................................................................................................................ 16 0 2 4.50 9 6 3 0 0 0 0 0 0 0 0
.................GAAAAATTGAGAGAAAG........................................................................................................................................................................................................................ 17 1 6 1.00 6 5 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTATTAGGTCGTCTAC.. 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................ACAAATTGAGAGAAAG........................................................................................................................................................................................................................ 16 1 6 0.50 3 1 2 0 0 0 0 0 0 0 0
..............................................AAACTTTATGGGGTGGAGGGTT...................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................AAAATTGAGAGAAAG........................................................................................................................................................................................................................ 15 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...................................................ATTTGAGGTGGTTGGTTGT.................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................ACGGTTAAGGCTGTGG.............................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTATTAGGTCGCCTAC.. 17 2 20 0.25 5 5 0 0 0 0 0 0 0 0 0
..................ACAAATTGAGAGAAAGG....................................................................................................................................................................................................................... 17 2 20 0.20 4 1 3 0 0 0 0 0 0 0 0
............................................................................................................................................GAAGGTCTGTGTGGTTAC............................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0
..................ACAAATTGAGAGAAA......................................................................................................................................................................................................................... 15 1 20 0.20 4 1 3 0 0 0 0 0 0 0 0
............................AAAAAGAGAAAAAAAAGCACACTTT..................................................................................................................................................................................................... 25 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
...............................................................................TTGGGTTGGTTTTTTTTTTT....................................................................................................................................................... 20 1 14 0.14 2 0 0 0 0 0 1 0 1 0 0
.......................................................................................................................................................................................................................................GGTATTAGGTCGTCTA... 16 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAGGGTGGTCTTTGGTT..................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0
........................................................AGGGGATGGGTTGTTGTG................................................................................................................................................................................ 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0
..................................................TTTTTGAGGTAGTGGCGTGT.................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0
.......ATAATGGTTGAAAAAATTG................................................................................................................................................................................................................................ 19 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0
................................................................GGTTGATGTGGTAGCTTGG....................................................................................................................................................................... 19 3 20 0.10 2 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGGTTGTTGTGGTGGCTA..................................................................... 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
................................................................GGTTGATGTGGTGGGT.......................................................................................................................................................................... 16 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................TATTAGGTCGTCTAC.. 15 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................TGGGTGGGGTTGTTT................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................TGAAAATTGAGAGAA.......................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTATTAGGTCGCCTACCA 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..............................................................TTGGTTGATGTGGTGGGTTTG....................................................................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................TTTTGAGTGCGGTTT........................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................TTGCGGTTAAGGTGGTGG.............................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:21 AM