ID:

dsi_14240

Coordinate:

3l:16444804-16444953 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16444392_16444803_+]; CDS [3l_16444459_16444803_+]; intron [3l_16444804_16445174_+]; Antisense to intron [3l_16437015_16445903_-]

Repeatable elements

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGGAGGAGCACCTGTGGCACTTCTGTGACCACTGCCAGATTTTAGTGCCGGTAAAGTATTCGACATAGAATATGTTATATCTGTATATCCACGACAAAGCATTTGTAAAAAGTGGAAGTGCGGATACGAAACATTATACCTAAGTATACATATGTATGTACCATACCCTCTACTCCTTAAAAAGTATGTAACAATTGAAAGATGGCCCTATAAAGTATTATATTCTCGATCGGGTTCAGTAGCCGAGTCG ************************************************.(((.((((((......)))))).)))(((((((((.(((((......((....)).....))))).)))))))))....(((((((((....)))))...)))).(((..(((((.................)))))..))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M053 female body
....................TTCTGTGACCACTGCCAGTT..................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................TTCTCGATCGGGTTCAGTAG........	20	0	1	1.00	1	1	0	0	0
.................CACCTCTGTGACCACGACCAG....................................................................................................................................................................................................................	21	3	3	0.33	1	0	1	0	0
.....................................................................................................................GTGCTGATACGAGACACTA..................................................................................................................	19	3	4	0.25	1	0	0	1	0
........................................................................................................................................................................................................................AGTCTATTCTCGATGGGG................	18	3	20	0.05	1	0	0	0	1
AGGAGGAACACCAGTGG.........................................................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0
...AGGAGAACCTGTGGCT.......................................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0

Anti-sense strand reads

TCCTCCTCGTGGACACCGTGAAGACACTGGTGACGGTCTAAAATCACGGCCATTTCATAAGCTGTATCTTATACAATATAGACATATAGGTGCTGTTTCGTAAACATTTTTCACCTTCACGCCTATGCTTTGTAATATGGATTCATATGTATACATACATGGTATGGGAGATGAGGAATTTTTCATACATTGTTAACTTTCTACCGGGATATTTCATAATATAAGAGCTAGCCCAAGTCATCGGCTCAGC ************************************************.(((.((((((......)))))).)))(((((((((.(((((......((....)).....))))).)))))))))....(((((((((....)))))...)))).(((..(((((.................)))))..))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
..................................................................................................................................................................TATGGGAGATGAGGAATTT.....................................................................	19	0	1	1.00	1	1	0	0	0
............................GGAGACGGTCTAAGATC.............................................................................................................................................................................................................	17	2	15	0.20	3	0	3	0	0
..................................................................................................................................................................................................AACTTGCTACCGGGA.........................................	15	1	6	0.17	1	0	0	1	0
......................................................................................................................................ATATGGATTAATATGTAT..................................................................................................	18	1	9	0.11	1	0	1	0	0
................................................................................................................................................................GGAGTGGGAGATGAGGATT.......................................................................	19	3	12	0.08	1	0	0	0	1
............................................................................................................................................................................AAGGAATTTTTGATACATTGAT........................................................	22	3	12	0.08	1	0	1	0	0

Generated: 04/24/2015 at 04:53 AM