ID:

dsi_14197

 Coordinate:

3r:10099943-10100092 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.8 -9.3 -9.2

Flybase annnotation

CDS [3r_10100093_10100162_-]; exon [3r_10100093_10100162_-]; intron [3r_10095698_10100092_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGATAAATAGCTCAGAAATTGAGAAATATTCAACTATTTTAAATTAAAGTACAAGACCGAAGTTTTATTGTTGTTTATTATGATTTATAGTACTTTAAGTAGGTTCAAAATTGCATTCCTTACTCCAAATCCAGTACCAATTGTGATCTAGTGAACT
***************************************************************************************...((.(((((.....((((.....))))...))))).))((((.(((((((.((((...(((............)))...)))).))))))).)))).**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
....................AGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................. 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
................CAGAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................. 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..........TCCGTTCAGTTGTTGCAG.............................................................................................................................................................................................................................. 18 2 13 4.46 58 15 0 0 0 20 23 0 0 0 0
.......................TGCAGAAGGAAGTCGACAGGCTCGAAGA....................................................................................................................................................................................................... 28 1 1 4.00 4 0 3 0 0 0 0 1 0 0 0
.......................TGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 23 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
................CAGAAGTTGCAGAAGGAAGTCGACAG................................................................................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................AGAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................AAGTTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................GAAGTTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............GTTCAGAAGTTGCAGAAGGA......................................................................................................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...............TCAGAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...........................GAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 19 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
.......................................................................................AATGTAGGATAAATAGCTC................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................AAGTTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................AGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 20 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..........................AGAAGGAAGTCGACAGGCTCCAA......................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................GTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........TCCGTTCAGAAGTTGCAGAAGGAAGT...................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................GCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GTTGTTTATTATGATTTATAGTAC................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........TCCGTTCAGAAGTTGCAGAAGGAAGTCGA................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................AGTTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........CTCCGTTCAGAAGTTGCAG.............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................CAGAAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............GTTCAGAAGTTGCAGAAGGG......................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TCAGAAGTTGCAGAAGGAAGT...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................GTTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................AAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............GTTTAGAAGTTTTAGAAGGAA........................................................................................................................................................................................................................ 21 3 5 0.40 2 0 0 0 2 0 0 0 0 0 0
.............GTTCAGAAGTCCTAGAAGGAA........................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
................................................................................TACTGAGAATGTTGGAAA........................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0
.........................................GGCTCGACGCTACGTCCGT.............................................................................................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
....................................CGCCAGGCTCGAAGG....................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0
.............GTTCATAAGTTGCAG.............................................................................................................................................................................................................................. 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..CTGAACGCCTCTTTCAGAA..................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1
.................AGAAGTTCTAGAAGGAA........................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GCGACTTGCGAGGCAAGTCTTCAACGTCTTCCTTCAGCTGTCCGAGCTTCCATACAGGCAGTTTCTAAAATATGTTTAAAATGACTCTTACATCCTATTTATCGAGTCTTTAACTCTTTATAAGTTGATAAAATTTAATTTCATGTTCTGGCTTCAAAATAACAACAAATAATACTAAATATCATGAAATTCATCCAAGTTTTAACGTAAGGAATGAGGTTTAGGTCATGGTTAACACTAGATCACTTGA
****************************************************************...((.(((((.....((((.....))))...))))).))((((.(((((((.((((...(((............)))...)))).))))))).)))).*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
........................................................................................................AGTCTTTAACTCTTTATA................................................................................................................................ 18 0 1 2.00 2 2 0 0 0
....................................................................................................................................................................................................AAGTTTTAACGTCAGGAA.................................... 18 1 1 1.00 1 0 1 0 0
............GCGAGTCTCCAACGTCGTCCT......................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0
...ACTTGCGGGACAAGTCT...................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 1 0
.................................................................................................................................................................................................................AAGACTGAGGTTCAGGTCA...................... 19 3 20 0.05 1 0 0 0 1
................................................TCCATAAAGGCAGTCT.......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 10:26 AM