dsi_14190

CDS [x_3465094_3465112_+]; five_prime_UTR [x_3465054_3465093_+]; exon [x_3465054_3465112_+]; intron [x_3465113_3467829_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACGGATGTGAAGCGATCTCCGGGTTCCCACCATGACGGATAACAAAAATGGTATTGTTAATTACTAAAAAAAAACCACAGATGCATAATTATAGTTTCTACAGAGGGGTGGCGATTATACACACTACTGAAGCGAGATTTATGGCCCATATTTTTCAGATGCTCGAGTTTTAGTCACTGTTTCGATTTCTAGACAAGCAATATAAGCCACACAAAATTCCCCTCACCATAGATTGCAGTTGTGTTCTTAT ************************************************...............................(((.....(((((((.((((......)))).)))))))......((((((((((((..((((...))))..))))..........))))))))...(((((........))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	M024 male body	M025 embryo	O001 Testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.......................................................................................................................................................................TTTTAGTCACTGTTTCGATTTCTA...........................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
..GGATGTGAAGCGATCTCCGGGTTCCCACC...........................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0
.CGGATGTGAAGCGATCTCC......................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
.........................CCCACCATGACGGATAACA..............................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0
...................................................................................................................................................................................TTTCGATTTCTAGACAAGCAA..................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
....ATGTGAAGCGATCTCCGGGG..................................................................................................................................................................................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0
.............GATCTCCGGGTTCCCACCATGACGG....................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0
.....TGTTTAGCGTTCTCCGGGTT.................................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	0	1	0	0
.............................................................................................................................ACTGAAGCGAGAGATATCG..........................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1	0	0
...................................................TTTTGTTGATTCCTAAAAAAAAA................................................................................................................................................................................	23	3	16	0.06	1	0	0	0	0	0	0	1	0
....................................GGATATCAAAAATGG.......................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1

TGCCTACACTTCGCTAGAGGCCCAAGGGTGGTACTGCCTATTGTTTTTACCATAACAATTAATGATTTTTTTTTGGTGTCTACGTATTAATATCAAAGATGTCTCCCCACCGCTAATATGTGTGATGACTTCGCTCTAAATACCGGGTATAAAAAGTCTACGAGCTCAAAATCAGTGACAAAGCTAAAGATCTGTTCGTTATATTCGGTGTGTTTTAAGGGGAGTGGTATCTAACGTCAACACAAGAATA ************************************************...............................(((.....(((((((.((((......)))).)))))))......((((((((((((..((((...))))..))))..........))))))))...(((((........))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M024 male body
................................................................ATTTTTTTTTGGTGTCTACGC.....................................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
................GATGCTCAGGGGTGGTACTGC.....................................................................................................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................CGAGCTCAAAATCAGTGACAAA....................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................TATTCGGTGTGCTTGAAGAGGA...........................	22	3	3	0.67	2	0	0	2	0	0	0	0
..........TCGATAGAGGCCCAAG................................................................................................................................................................................................................................	16	1	2	0.50	1	0	1	0	0	0	0	0
....................CTCAAGGGTGGTAATGC.....................................................................................................................................................................................................................	17	2	9	0.44	4	1	0	0	2	0	1	0
........................................................................................................................TGTGATGGCTGCGCTCTCAA..............................................................................................................	20	3	3	0.33	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................ATTCGGTGTGCTTGAAGAGGAG..........................	22	3	3	0.33	1	0	0	1	0	0	0	0
...........................................................TAAGGATATGTTTTTGGTGTC..........................................................................................................................................................................	21	3	4	0.25	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................TTTTAAGGCGAGTCGGATCT..................	20	3	5	0.20	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................................ATTTGGTGTGTTTGAAGAGGA...........................	21	3	6	0.17	1	0	0	1	0	0	0	0
........GGTCGATAGAGGCCCAAG................................................................................................................................................................................................................................	18	3	20	0.15	3	3	0	0	0	0	0	0
..........................................................................................................................................................................................................ATTCGGTGTGCTTGAAGAGGA...........................	21	3	8	0.13	1	0	0	1	0	0	0	0
...................................................................................................................................................................................AAAGTTAGAGATCTGATCGT...................................................	20	3	9	0.11	1	0	0	0	1	0	0	0
..........TCGATAGAGGCCCAAGC...............................................................................................................................................................................................................................	17	2	11	0.09	1	0	0	0	1	0	0	0
.......................................................................................................................................................AGAAGTCTACGAGATCAA.................................................................................	18	2	13	0.08	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:3465063-3465312 +	dsi_14190	ACGGATGTGAAGCGATCTCC---GGGTT----------------CCCACCATGACGGATAACAAAAATGGTATT-GTTAATTACT----AAAAA---AAAACCACAGATGCATAATTATAGTTTCTACAGAGGGGTG-GCGATTATACACACTACTGAAGCGAGATTT-----ATGGCCCAT-------ATTTTTCAGAT-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTAGTCACTGTTTCGATTTCTAG-ACAAGCAATATAAGCCACACAAAATTCCCCT--CACCATAGATTGCAGTTGT-------------------GTTCTTAT
droSec2	scaffold_4:2940061-2940309 -		ACGGATGTGAAGCGATCTCC---GGGTT----------------CCCACCATGACGGATAACAAAAATGGTATT-GTTAATTACT----AAAAA---A-AACCACAGATGCATAATTATAGTTTCTACAGAGGGGTG-GCGATTATACACACTACTGAAGCGAGATTT-----ATGGCCCAT-------ATTTTTCAGAT-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTAGTCACTGTTTCGATTTCTAG-ACAAGCAATATAAGGCACACAAAATTCCCCT--CACCATAGATTGCAGTTGT-------------------GTTCTTAT
dm3	chrX:3767160-3767408 +		ACGGATGTGAAGCGATCTCC---GGGTT----------------CCCAACATGACGGATAAAAAAAATGGTATT-GTTAATTACT----AAAAA---T-AACCACAGATGCATAATTATAGTTTTTACAGAGGGGTG-GCGATTATACAGACTACTGAACCGAGATTT-----ATGGCCCAT-------ATTTTTGTGAG-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTACTCATTGTTTCGATTTCTAG-ACATGCTATATAAGCCACACAAAATACACCT--CACCATAGATTGCAATAGT-------------------GTTCTTAT
droEre2	scaffold_4690:1151124-1151402 +		ACGGATGTAAAGCGATCTCC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATT-GTTAATTACA----AAAAA---A-A--AACAGATACATAACTAAAGTTTTTACAGAGGGGAG-GCAATTATACAGATTACTGAACCGAGATTT-----ATGGCCCAA-------TTTTTTTGG--------------------------------CCAAATAC----------------------------------TGTGCTAGCTGACAA--------------------------------------------------------GTTCACTTGAGCCTGGAGTTTTATTCATTGTTTCGATTACTTG-ACATGCAATTTAATCCCCACAAAATTCCCCT--CACCATAGATTGCAATGGT-------------------GGTTTTAT
droYak3	X:4647606-4647883 -		ACGGATGTAAAGCGATCTCC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATT-GTTAATTACA----AAAA------AA-CACATATGCATAACTATAGTTTTT-CAAAGGGGTG-GCAATTATACAGATTACTAAACCGAGATAT-----ATGGCCCAT-------TTTTTTTTGA-------------------------------CCAAATAC----------------------------------TGTGCTGGCGTTCAA--------------------------------------------------------GTGCACTTGAGCCTGGAATTTTAGATATTGTTTCTATGTATTG-ACATGCAATTTAAGCACCACAAAATTCCCCC--CGCCGTAGATTGCAATTGT-------------------GGTTTTAT
droEug1	scf7180000409553:17494-17801 +		ACGGATGTAAAACGATCTAC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATT-ACTAATCATAAACT-----A---------ATCATCACTAATTATAGTTTTTACAGTGGGGTA-GTAATTACACAGATCACTGAACCGAGATTT-----GTGGGTCAT-------AATTTGAAAATAAA--------------------------G-------CCTGAATTTTAGATTGAATA--ACTTTGATATTTTTGAT---TTATATAAATGCATCTTTCAATATCTTTATAAACATTCCTTATCGAAAAG-AATCG-TTTTTATATGCACTTGAATTTAGGTCTTGAATCATTGTTCCGTTTCCTTA-ATATGCCAT----------------------------------------------------------------------
droBia1	scf7180000302421:2538480-2538753 +		ACGGATGTGAAGCGATCCAC---GGATG----------------CCCAACATGACGGATAAGGAAAATGGTATT-GCTGATCTCA----AA--------AA-CCTAACTGCGTAATTATAGTTTTTACAGCGGGGTG-GTAATTAAACGGAGCACTGAGCCGACACTT-----AGGGTCTAT-------ATTTTCGAGGTACCA---------------------------------CATGGAGGCTATAGTCAGTATACCATAGAT-------------------------------------------GACATTCCCTGACGCAATTTAACTGCGTTTTATATT-AATTGATTTCGTGTCTGCGAT------------------------------------------------------CCATGGGCTGTGAGTGG---------------GAATATTTCTTT
droTak1	scf7180000415248:574643-574813 -		ACGGATGTAAAGCGATCCAC---GGATT----------------TCCAACATGACGGATAAAGAAAATGGTAAT-GCTAATCACA----AAA-------AA-CCTAGCTTCATAATTATAGTTTTTACAGCAAGGTGGGTAATTATACAGATCAGTGAACCGAGATTT-----ATGGCCCAT-------ATTTTGGAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------CATATATCGTAGTC-----------------------------
droEle1	scf7180000491018:214334-214483 -		ACGGATGTAAAGCGAATTAC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATTTATTAGTTACA----AACAA---A-AA-CGAAAATGCATAGTTATAGTTTCTACAGAGGGGTG-GTAATTATACAGATCACTGAACCGAGATTT-----ATGGGCCAA-------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779334:968043-968196 -		ACGGATGTAAAGCGAACTAC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATTTATGAGTTACA----AA--------AACCAAAATAGCATTATTATACTTTTTACAGCAAGGTG-GTAATTATACAGATCAGTGAACCGAGATTT-----ATGGGACAT-------ACTTTCGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453901:702295-702632 -		ACGGATGTAAAGCGAT----------------------------TCCAACATGACGGATAAGGAAAATGGTAAT-GCTAATCACA----AA--------AA-CCCAAATGCATAATTATAGTTTTTCCAGCGGGTTG-GTAATTATACAGACCACTGAACCGAGGTTA-----TAGACCCAT-------ATTTTGAAG-TAACACTTACTATCTTTTATGGTGGCTTAAA-------CCGGGATTACAGG------------------ATTCTGAA---TCAGATGAGTACATCTGTTATCAGT---------------------TAGG-AAT---------------CATGAGCTCAGGATCTGAGTCATAGCTCCGTT--CTAATAC-AGTTGGCTAAACTGCAGAAA-TTCCCCTTTTTTCATAGATTGCGCTCGTTCTGAAAGTGAGGAGG---CACTTTGT
droKik1	scf7180000302517:63421-63642 -		ACGGATGCAAAGCGAGCTGC---GA-GC----------------CCAAAAATGACGGATCAAGAAAATGGTATT-ACTCAAAAT----------A---------ATTATTAATAATTAGAAATAGT-CATAGTAGTT-ATAATTATAGAGATCATTGAACTGAA---TAGGGGAAGACCTACATTTCTAAACTTTTGG--------------------------------CAAA---GCT----------------------------------------------------------------------------------------------------------------------ATTTTATATTTACTT--TTCATTTC-----------------------CAAAGCAGTCTC--TATTATATGGCATAGTAGT-------------------GACTTTAA
droAna3	scaffold_13117:706256-706306 +		ACGGATGAGAACCGGC-----------C----------------CCCACAATGACGGATAAAGACAATGGTATT-GCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396412:625562-625655 +		ACGGATGTGAAC-------C---GGAGC----------------CCCAAAATGACGGATAAAGACAACGGTATT-GCTATACTTA---T-----AACTAT--ATATAATTAACAGCTATAGTTCCACCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group1e:6911939-6912043 +		ACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATAAGGAAAATGGTATT-GTTAATTATTCTAT-----AAAT---------GTCCATAATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_25:248549-248653 +		ACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATAAGGAAAATGGTATT-GTTAATTATTCTAT-----AAAT---------GTCCATAATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACGGATGTGAAGCGATCTCC---GGGTT----------------CCCACCATGACGGATAACAAAAATGGTATT-GTTAATTACT----AAAAA---AAAACCACAGATGCATAATTATAGTTTCTACAGAGGGGTG-GCGATTATACACACTACTGAAGCGAGATTT-----ATGGCCCAT-------ATTTTTCAGAT-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTAGTCACTGTTTCGATTTCTAG-ACAAGCAATATAAGCCACACAAAATTCCCCT--CACCATAGATTGCAGTTGT-------------------GTTCTTAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................TTTTAGTCACTGTTTCGATTTCTA.................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..GGATGTGAAGCGATCTCC---GGGTT----------------CCCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGGATGTGAAGCGATCTCC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CCCACCATGACGGATAACA...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTTCGATTTCTAG-ACAAGCAA.......................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATGTGAAGCGATCTCC---GGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATCTCC---GGGTT----------------CCCACCATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACGGATGTGAAGCGATCTCC---GGGTT----------------CCCACCATGACGGATAACAAAAATGGTATT-GTTAATTACT----AAAAA---A-AACCACAGATGCATAATTATAGTTTCTACAGAGGGGTG-GCGATTATACACACTACTGAAGCGAGATTT-----ATGGCCCAT-------ATTTTTCAGAT-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTAGTCACTGTTTCGATTTCTAG-ACAAGCAATATAAGGCACACAAAATTCCCCT--CACCATAGATTGCAGTTGT-------------------GTTCTTAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............GATCTCC---GGGTT----------------CCCACCATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.............GATCTCC---GGGTT----------------CCCACCATGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
.................................................................................................................................GAGGGGTG-GCGATTATACACACTA........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
....ATGTGAAGCGATCTCC---GGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
................................................................................................................TAATTATAGTTTCTACAGAGG.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............GATCTCC---GGGTT----------------CCCACCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..................................................................................................................ATTATAGTTTCTACAGAGGG............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...GATGTGAAGCGATCTCC---GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................TTCAGAT-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTAGT..................................................................................................	21	1	1.00	1	1	0	0	0
..............ATCTCC---GGGTT----------------CCCACCATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..........AGCGATCTCC---GGGTT----------------CCCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...................C---GGGTT----------------CCCACCATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......................................................................................................................................................................TT-----ATGGCCCAT-------ATTTTTCAGA...........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..................................................ATGACGGATAACAAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

dm3

ACGGATGTGAAGCGATCTCC---GGGTT----------------CCCAACATGACGGATAAAAAAAATGGTATT-GTTAATTACT----AAAAA---T-AACCACAGATGCATAATTATAGTTTTTACAGAGGGGTG-GCGATTATACAGACTACTGAACCGAGATTT-----ATGGCCCAT-------ATTTTTGTGAG-----------------------------G-------CTC----------------------------------------------------------------------------------------------------------------------GAGTTTTACTCATTGTTTCGATTTCTAG-ACATGCTATATAAGCCACACAAAATACACCT--CACCATAGATTGCAATAGT-------------------GTTCTTAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......GTGAAGCGATCTCC---GGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GATGTGAAGCGATCTCC---GGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
...............TCTCC---GGGTT----------------CCCAACATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GATGTGAAGCGATCTCC---GGGTT----------------CCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GCTATATAAGCCACACAA.........................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............GATCTCC---GGGTT----------------CCCAACATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TATACAGACTACTGAACCGAGATT...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........GCGATCTCC---GGGTT----------------CCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGT-------------------GTTCTTT.	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TGAAGCGATCTCC---GGGTT----------------CCCAACATGA............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACGGATGTAAAGCGATCTCC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATT-GTTAATTACA----AAAAA---A-A--AACAGATACATAACTAAAGTTTTTACAGAGGGGAG-GCAATTATACAGATTACTGAACCGAGATTT-----ATGGCCCAA-------TTTTTTTGG--------------------------------CCAAATAC----------------------------------TGTGCTAGCTGACAA--------------------------------------------------------GTTCACTTGAGCCTGGAGTTTTATTCATTGTTTCGATTACTTG-ACATGCAATTTAATCCCCACAAAATTCCCCT--CACCATAGATTGCAATGGT-------------------GGTTTTAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....ATGTAAAGCGATCTCC---GGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
....ATGTAAAGCGATCTCC---GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
...............TCTCC---GGATT----------------CCCAACATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
................CTCC---GGATT----------------CCCAACATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.........................ATT----------------CCCAACATGACGGATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........AAGCGATCTCC---GGATT----------------CCCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................CATGACGGATAAAGAAAATGA............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................ATT----------------CCCAACATGACGGATA......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................AATTATACAGATTACTGAACCGAGATT...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........AAAGCGATCTCC---GGATT----------------CCCAACATGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0

droYak3

ACGGATGTAAAGCGATCTCC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATT-GTTAATTACA----AAAA------AA-CACATATGCATAACTATAGTTTTT-CAAAGGGGTG-GCAATTATACAGATTACTAAACCGAGATAT-----ATGGCCCAT-------TTTTTTTTGA-------------------------------CCAAATAC----------------------------------TGTGCTGGCGTTCAA--------------------------------------------------------GTGCACTTGAGCCTGGAATTTTAGATATTGTTTCTATGTATTG-ACATGCAATTTAAGCACCACAAAATTCCCCC--CGCCGTAGATTGCAATTGT-------------------GGTTTTAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............ATCTCC---GGATT----------------CCCAACATGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
....ATGTAAAGCGATCTCC---GGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................CTCC---GGATT----------------CCCAACATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............TCTCC---GGATT----------------CCCAACATGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............TCTCC---GGATT----------------CCCAACATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........AGCGATCTCC---GGATT----------------CCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................ACATGACGGATAAAGAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............CGATCTCC---GGATT----------------CCCAACATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................C---GGATT----------------CCCAACATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............GATCTCC---GGATT----------------CCCAACATGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............TCTCC---GGATT----------------CCCAACATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...GATGTAAAGCGATCTCC---GGATT----------------CCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....ATGTAAAGCGATCTCC---GGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....TGTAAAGCGATCTCC---GGATT----------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GATCTCC---GGATT----------------CCCAACATGA............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................CTATAGTTTTT-CAAAGGGGT..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....TGTAAAGCGATCTCC---GGATT----------------CCCAACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................AACATGACGGATAAAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GTAAAGCGATCTCC---GGATT----------------......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CACCACAAAATTCCCCC--CGCCGTA.......................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............ATCTCC---GGATT----------------CCCAACATGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................AACATGACGGATAAAGAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........AAAGCGATCTCC---GGATT----------------CCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TTT-CAAAGGGGTG-GCAATT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TGGCGTTCAA--------------------------------------------------------GTGCACTTGA.................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............GATCTCC---GGATT----------------CCCAACATGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GACGGATAAAGAAAATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ACGGATGTAAAACGATCTAC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATT-ACTAATCATAAACT-----A---------ATCATCACTAATTATAGTTTTTACAGTGGGGTA-GTAATTACACAGATCACTGAACCGAGATTT-----GTGGGTCAT-------AATTTGAAAATAAA--------------------------G-------CCTGAATTTTAGATTGAATA--ACTTTGATATTTTTGAT---TTATATAAATGCATCTTTCAATATCTTTATAAACATTCCTTATCGAAAAG-AATCG-TTTTTATATGCACTTGAATTTAGGTCTTGAATCATTGTTCCGTTTCCTTA-ATATGCCAT----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACGGATGTGAAGCGATCCAC---GGATG----------------CCCAACATGACGGATAAGGAAAATGGTATT-GCTGATCTCA----AA--------AA-CCTAACTGCGTAATTATAGTTTTTACAGCGGGGTG-GTAATTAAACGGAGCACTGAGCCGACACTT-----AGGGTCTAT-------ATTTTCGAGGTACCA---------------------------------CATGGAGGCTATAGTCAGTATACCATAGAT-------------------------------------------GACATTCCCTGACGCAATTTAACTGCGTTTTATATT-AATTGATTTCGTGTCTGCGAT------------------------------------------------------CCATGGGCTGTGAGTGG---------------GAATATTTCTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACGGATGTAAAGCGATCCAC---GGATT----------------TCCAACATGACGGATAAAGAAAATGGTAAT-GCTAATCACA----AAA-------AA-CCTAGCTTCATAATTATAGTTTTTACAGCAAGGTGGGTAATTATACAGATCAGTGAACCGAGATTT-----ATGGCCCAT-------ATTTTGGAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------CATATATCGTAGTC-----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACGGATGTAAAGCGAATTAC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATTTATTAGTTACA----AACAA---A-AA-CGAAAATGCATAGTTATAGTTTCTACAGAGGGGTG-GTAATTATACAGATCACTGAACCGAGATTT-----ATGGGCCAA-------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACGGATGTAAAGCGAACTAC---GGATT----------------CCCAACATGACGGATAAAGAAAATGGTATTTATGAGTTACA----AA--------AACCAAAATAGCATTATTATACTTTTTACAGCAAGGTG-GTAATTATACAGATCAGTGAACCGAGATTT-----ATGGGACAT-------ACTTTCGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGGATGTAAAGCGAT----------------------------TCCAACATGACGGATAAGGAAAATGGTAAT-GCTAATCACA----AA--------AA-CCCAAATGCATAATTATAGTTTTTCCAGCGGGTTG-GTAATTATACAGACCACTGAACCGAGGTTA-----TAGACCCAT-------ATTTTGAAG-TAACACTTACTATCTTTTATGGTGGCTTAAA-------CCGGGATTACAGG------------------ATTCTGAA---TCAGATGAGTACATCTGTTATCAGT---------------------TAGG-AAT---------------CATGAGCTCAGGATCTGAGTCATAGCTCCGTT--CTAATAC-AGTTGGCTAAACTGCAGAAA-TTCCCCTTTTTTCATAGATTGCGCTCGTTCTGAAAGTGAGGAGG---CACTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACGGATGCAAAGCGAGCTGC---GA-GC----------------CCAAAAATGACGGATCAAGAAAATGGTATT-ACTCAAAAT----------A---------ATTATTAATAATTAGAAATAGT-CATAGTAGTT-ATAATTATAGAGATCATTGAACTGAA---TAGGGGAAGACCTACATTTCTAAACTTTTGG--------------------------------CAAA---GCT----------------------------------------------------------------------------------------------------------------------ATTTTATATTTACTT--TTCATTTC-----------------------CAAAGCAGTCTC--TATTATATGGCATAGTAGT-------------------GACTTTAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACGGATGAGAACCGGC-----------C----------------CCCACAATGACGGATAAAGACAATGGTATT-GCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................CACAATGACGGATAAAGACAATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
......GAGAACCGGC-----------C----------------CCCACAATGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.............GGC-----------C----------------CCCACAATGACGGATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................CCACAATGACGGATAAAGACA................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

ACGGATGTGAAC-------C---GGAGC----------------CCCAAAATGACGGATAAAGACAACGGTATT-GCTATACTTA---T-----AACTAT--ATATAATTAACAGCTATAGTTCCACCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATAAGGAAAATGGTATT-GTTAATTATTCTAT-----AAAT---------GTCCATAATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................CTCCAGCGGAATCCCCAGCACTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.............GAACTCCAGCGGAATCCCCAGCACTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....ATGCAAAGCGAACTCCAGCGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................CCAACATGACGGATAAGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................GCAGCACCAACATGACGGATAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................CAGCGGAATCCCCAGCACTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTCCAGCGGAATCCCCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CCAGCGGAATCCCCAGCACTAGCAGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................AGCACCAACATGACGGATAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............ACTCCAGCGGAATCCCCAGCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................GCACCAACATGACGGATAAGGAAAATGA............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CCAGCGGAATCCCCAGCACTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

ACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATAAGGAAAATGGTATT-GTTAATTATTCTAT-----AAAT---------GTCCATAATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................GCACCAACATGACGGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
.............................................CCAACATGACGGATAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..........................................GCACCAACATGACGGATAAGGAAAATGA............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.............GAACTCCAGCGGAATCCCCAGCACTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
............................................ACCAACATGACGGATAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.......................................GCAGCACCAACATGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........GCGAACTCCAGCGGAATCCCCAGCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................CGGAATCCCCAGCACTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................AGCACCAACATGACGGATAAGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................CAACATGACGGATAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................AGCACCAACATGACGGATAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

dsi_14190

x:3465113-3465262 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.2	-18.1	-18.1