dsi_14170

five_prime_UTR [3r_16388207_16388220_+]; CDS [3r_16388221_16390812_+]; exon [3r_16388207_16390812_+]; intron [3r_16383846_16388206_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TATGTCGCTTATGTAAGCGGCTTAGGCTCTATTTCGGAATATCGTGCAAATCAAGATGTTTGCAAGAAACCTCAATGGTAGCCAAGAATTTTTGAAAATTGATTTAAATCTATATGAACGGATACAGAAGGGCGGGCTATAAACAGACTCTTATTTTACCTGAATAGATATTTATTTTATCGCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCCGACAGCGAC ************************************************...((((((((((......((.....))(((((.....((((((...(((..((((........))))..))).))))))....)))))....(((.............)))....((((.......)))))))))))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body
...................................................................................................................................GCGGGCTATAAACAGACT.....................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
......................................................................................AATTTTTGAAAGTTGATTTA................................................................................................................................................	20	1	2	0.50	1	0	0	1	0	0	0
.....................................................................................................ATTTACATCTATATGGATGGATA..............................................................................................................................	23	3	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................AGAATGTCCGGCTCT.....................................	15	1	3	0.33	1	0	0	0	1	0	0
..........................................................................................................................................................................................CATCTCATCAACGGAATGCC............................................	20	3	8	0.13	1	0	0	0	0	0	1
..............................................................................................................................................................................................TCATCCATAGAGTGCCGGG.........................................	19	3	10	0.10	1	0	0	0	0	1	0
............................................TGCAAATGAAGATGTCTGC...........................................................................................................................................................................................	19	2	11	0.09	1	0	0	0	0	1	0
.........................................................................................TTTTGAAAGCTGATTTAAA..............................................................................................................................................	19	2	20	0.05	1	0	0	0	0	1	0
................................................................................................................TATGAACGGATGCCGA..........................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0
......................................................................................................................CGTAAACAGAAGGTCGGG..................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0
.............................................GCAAATGAAGATGTCTGC...........................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................ATTGCCTGGCTCTGATG.................................	17	2	20	0.05	1	0	0	0	1	0	0

ATACAGCGAATACATTCGCCGAATCCGAGATAAAGCCTTATAGCACGTTTAGTTCTACAAACGTTCTTTGGAGTTACCATCGGTTCTTAAAAACTTTTAACTAAATTTAGATATACTTGCCTATGTCTTCCCGCCCGATATTTGTCTGAGAATAAAATGGACTTATCTATAAATAAAATAGCGTTTGTAAAGTAGGTGTCTTACGGGCCGAGACTACATGTACGTCGTACTCGCTGTAAGGCTGTCGCTG ************************************************...((((((((((......((.....))(((((.....((((((...(((..((((........))))..))).))))))....)))))....(((.............)))....((((.......)))))))))))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	SRR553486 Makindu_3 day-old ovaries
........................................................................................................................................GATATTTGTCTGAGC...................................................................................................	15	1	3	0.33	1	1	0	0	0	0	0	0
...............................................................................CCGGTGCTAAAAAACTTTTAA......................................................................................................................................................	21	3	8	0.13	1	0	1	0	0	0	0	0
...............................................................................................................................TTGCCGCCCGATAATTG..........................................................................................................	17	2	9	0.11	1	0	0	0	1	0	0	0
.......................................................................................................................................CCATATTTGTCTGAG....................................................................................................	15	1	10	0.10	1	0	0	1	0	0	0	0
................................................................................CGGATCTAAAAAACTTTT........................................................................................................................................................	18	2	13	0.08	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................TCTCGCGGAAAGGCTGTC....	18	3	20	0.05	1	0	1	0	0	0	0	0
..................................................................................................................................................................................TAGTGTTTGTAAAGT.........................................................	15	1	20	0.05	1	0	0	1	0	0	0	0
.................................AGCCGAATAGCCCGTTTAG......................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................AAAATAGCGCTTGAAAAG..........................................................	18	2	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:16388007-16388256 +	dsi_14170	TATGTCGC------------------------------------------------------------------------------TTATGTAAGCGGCTTAGGCTCTA--TTTCGG------------------------AATATCG-----------------------------TGCAA----A--TCAAGATGTTTGCAAGAAACCTCAATGGTAGCCAAGAATTTTTGAAAATTGATTTA--------------------------------------------------------------------AATCTATATGAACGGATAC-AGAAGGGCGGGCTATAA----ACAGACTCTTATTTTAC-----CTGAAT-------------------------------------------------------------------------------------------------AGATATTTATTTTATCGCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC
droSec2	scaffold_0:17253361-17253608 +		TATGTCGC------------------------------------------------------------------------------TTGTGTAAGCGGCTTAGGTTCAATGTTTCGG------------------------AACATCG-----------------------------TGCAA----A--TCAAGATGTTTGCAAGAAACCTCAAGAGTAGCCAAGAATTTTTGAAAATTTATT-------------------------------------------------------------------------------GAACGGATAC-AGAAGGGCGGTCTATAA----ACAGACTCTTATTTTAC-----CTGAATTGAT-------------------------------GT----------------------------------------------T-------------AGATATTTATTTTATCGCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACATCGAC
dm3	chr3R:4603614-4603865 -		TATGTCGTTTACC-------------------------------------------------------------------------TTATGTAAGCGGCTAAGGCTCAATGTTTCGG------------------------AATATCG-----------------------------TGCAA----G--TCAAGATGTTTGCAAGAAACCTGAA--GTAGCCAAGAATTTTTGA------------------------------------------------------------------------------------------AGGGTTAC-AGAAGGCCGG-CTATTA----ACAGATTCTTATTTTAC-----CTGAATTGAT-------------------------------GT----------------------------------------------ATAAAATCCTTGTTAGATATTTATTTTATCCCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC
droEre2	scaffold_4770:16982672-16982849 +		TT--------------------------------------------------------------------------------------ATTTTAGCAGCTGTGATTCGA----------------------------------AAACA-----------------------------AGCAA----A--AAAGGGTTTTTATTGGACACTTGAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------TGCAC-----TTGAATTGAT-------------------------------GT----------------------------------------------TTAAAATCCTTGTTAAGTATTTCTTGTATCCCATTCATTTCATCCGTAGAATGCCCGGCTCTGATGCACATGCAGCATGAGCGACAGTCC------------------------GACAGCAAC
droYak3	3R:8665102-8665272 -		CTT-------------------------------------------------------------------------------------ATTCAATCGGTTGTGATTCGA---------------------------------------------------AAAC-----AAA---------------------------------------------------------------------------------------------------------------------TATGGGGGA----------------------------------------------CACTTA----AGGGAAACTTTTTGTTC-----TATAATTGAT-------------------------------GT----------------------------------------------TTAATGTCTTTGTTAAGTATT---TCTTTCCCATTCATTTCATCCGTAGAATGCCCGGCTCTGATGTACATGCACCATGAGCGACATTCC------------------------AACAGCGAC
droEug1	scf7180000409490:120041-120299 +		GAT------------------------------------------------------------------------------------------------TATGATTCGTCGATTCTA----------------------------TCA---------------TGGCCAAAAACCTATGCTAACAAGGAACAAAATC-----------------CAGGTGCCTAGATCT-------------T-------------------------------------------------------------------------------AATCGGAATCAAGAACAGCAGTTTAGAACAAAACAATATATTATTTAACATTTTCAGTTTTAAT-------------------------------TTTCGATAGG-------TTTTTTACCTTTAGAAAATCTTAAACTAAACC-------------------GAAATGTTTCCCATTCTTCTCATCCTTAGAATGCCCGGCTCTGATGTACACGCAGGATGAGCGACATTCC------------------------GACAGCGAC
droBia1	scf7180000302402:7314177-7314502 -		TGTATTGCTCGCTTTAAGCTATTAGGTGCAAATCTATTTTATGTTATTCCAATATGGTAGAAACGGGATAGCATTATAGATCAATCTTATTTTAGCGGTTGTGGCTCTG-----------TAAAGGGACTTTGTTCGG---TATATCGGTTATGATTCCAAAAT-----ATAGGG------------------------------------------------------------------------------------------------------------------------AAA----------------------------------------------TATTTA----A-----------------------TGGGAAAGATCCT-----TATAATTTTTC--CTCTTACTTTTCAAAATAAATCAATTTTATTTAGTTCTTAAAACCATCCTTTAA-TC------------------TTACGGTTCTCCCATTCTTGTCATCCCCAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC
droTak1	scf7180000414009:222326-222614 +		TAAGTTTC------------------------------------------------------------------------------CGAAATATGCGGAATATATTC--------GG------------------------TAGATTGGTGAAGATTCCAATAT-----AAAGGGTATGCAAATAAG--ACAAAATGTTTGCAAGGAC--------------TAGCATTT---------GATTTATTTATCCTATTGACGATGTTATAAAATGGCTTTTAGTATGGGTATATAGGGAA----------------------------------------------C--------------------------------------------AT-----TTTAATTATTCTTCTCTTAATTATTAATATG-----------------TCTTTATACGAAACTTTAA-TC------------------TCACGG-TT---CTCTATTCTCATCCCCAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC
droEle1	scf7180000491212:1195436-1195500 +		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCACCCATAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACAATCC---------------------GACGACAACAAC
droRho1	scf7180000779904:8330-8405 +		TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCCTCTCTTTTCATCCGTAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAACGAC
droFic1	scf7180000454106:2565448-2565660 +		TTTTTCGCTTGC---------------------------------------------------------------------------CACTTTAGCGGTTAAGACTCGCCGTTTCGGTTGTTAACGGAGTTTACTCTAGGAATCAACA-----------------------------TGCAA----A-------------------------------AACCAATACTACTTAAAATG------------------------------------------------------TGGCAAAACTTAAGCTTTAATAAACTTTATG---------------------------------------------------------ATTGAA-------------------------------AC----------------------------------------------T-------------GGATTT-----------ATTTTTTATCATCCTCAGAATGCCCGGCTCTGATGTACATGCAGGATGAGCGACATTCC------------------------GACAGCGAC
droKik1	scf7180000302247:290593-290810 +		TTTCTTAC----G-------------------------------------------------------------------------TTATGTGAGCAGTTAATAGTTGTCTCTT---------ACGG--------------ATTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCGAAGGAATTGATTA------------ATTTGTAATTTCCGACTGATAGTATTTCCC--TTCTAACTTTGGG---------------GTTTCTTTTATAAGACCTTGTTTCAA-CC------------------ATTCTTTTTTCTATTTTTTCTCATCTCCAGAATTCCCAGCTCTAATGTACATGCAGGACGAGCGACATTCC------------------------AGCAGCGAC
droAna3	scaffold_13340:11013260-11013320 -		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTACAGAATGCCCGGCTCTGATGTATATGCAAAACGAGCAACAATCC------------------------GGAAGCGAC
droBip1	scf7180000396374:69544-69636 +		TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCT-----CTGACTCAAT-------------------------------G-------------------------------------------------------------------------TCTACTTTTTCGTCCATTTCCAGAATGCCCGGCTCTGATGTATATGCAGGACGAGCAACCAACC------------------------GGAAGCGAC
dp5	2:27259605-27259677 -		C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCATCCGCAGATTACCCAGCTCTGACGTATATGCAGGACGAGTGCCGACA--------CCA-GAC------CTGCAACAACAAC
droPer2	scaffold_6:2549635-2549707 -		C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCATCCGCAGATTACCCAGCTCTGACGTATATGCAGGACGAGTGCCGACA--------CCA-GAC------CTGCAACAACAAC
droWil2	scf2_1100000004902:4601824-4601901 -		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCACAGATTACCCAGCTCTGATGTATATGAAAGATGAGCGACCATTAAAACCCACCATCAC------CTACAAAGCCGCC
droVir3	scaffold_13047:1876905-1876980 +		TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGCAGGTTGCCCAGCTCTGATGTATATGCAGGATGAGCGACGCTGT--------CC-AATGAACGCCGATGCCCTCGCC
droMoj3	scaffold_6540:3806817-3806860 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTGCCCAGCTCTGATGTATATGCAGGACGAGCA---------------------------------CCGCGAC
droGri2	scaffold_14906:8713848-8713905 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTACCCAGCTCTAATGCATATGCAGGACGAGCGACAACCT--------AG-AGAA---------GAGAACGG-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TATGTCGC------------------------------------------------------------------------------TTATGTAAGCGGCTTAGGCTCTA--TTTCGG------------------------AATATCG-----------------------------TGCAA----A--TCAAGATGTTTGCAAGAAACCTCAATGGTAGCCAAGAATTTTTGAAAATTGATTTA--------------------------------------------------------------------AATCTATATGAACGGATAC-AGAAGGGCGGGCTATAA----ACAGACTCTTATTTTAC-----CTGAAT-------------------------------------------------------------------------------------------------AGATATTTATTTTATCGCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................GCGGGCTATAA----ACAGACT...................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TATGTCGC------------------------------------------------------------------------------TTGTGTAAGCGGCTTAGGTTCAATGTTTCGG------------------------AACATCG-----------------------------TGCAA----A--TCAAGATGTTTGCAAGAAACCTCAAGAGTAGCCAAGAATTTTTGAAAATTTATT-------------------------------------------------------------------------------GAACGGATAC-AGAAGGGCGGTCTATAA----ACAGACTCTTATTTTAC-----CTGAATTGAT-------------------------------GT----------------------------------------------T-------------AGATATTTATTTTATCGCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACATCGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTACATGCAGCATGAGCG........................................	22	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAGCATGAGCGACATTCC------------------------.........	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACATGCAGCATGAGCGA.......................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAGCATGAGCGACATTCC------------------------GA.......	27	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCATGAGCGACATTCC------------------------GACA.....	25	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCGACATTCC------------------------GACATC...	20	1	1.00	1	0	0	0	1

dm3

TATGTCGTTTACC-------------------------------------------------------------------------TTATGTAAGCGGCTAAGGCTCAATGTTTCGG------------------------AATATCG-----------------------------TGCAA----G--TCAAGATGTTTGCAAGAAACCTGAA--GTAGCCAAGAATTTTTGA------------------------------------------------------------------------------------------AGGGTTAC-AGAAGGCCGG-CTATTA----ACAGATTCTTATTTTAC-----CTGAATTGAT-------------------------------GT----------------------------------------------ATAAAATCCTTGTTAGATATTTATTTTATCCCAAACATTTCATCCACAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGGCTCTGATGTACA.....................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCGGCTCTGATGTACA.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTACATGCAGCATGAGCGAC......................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTACATGCAGCAT.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATGTTTCGG------------------------AATATCG-----------------------------TGC........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGCTCTGATGTACATGCA.................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACATGCAGCATGAGCG........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATGAGCGACATTCC------------------------.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAACATTTCATCCACA...........................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAGCATGAGCGA.......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGACATTCC------------------------GACA.....	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGATGTACATGCAGCA..............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAGCATGAGCGACATTCC------------------------G........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGCAGCATGAGCGAC......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TT--------------------------------------------------------------------------------------ATTTTAGCAGCTGTGATTCGA----------------------------------AAACA-----------------------------AGCAA----A--AAAGGGTTTTTATTGGACACTTGAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------TGCAC-----TTGAATTGAT-------------------------------GT----------------------------------------------TTAAAATCCTTGTTAAGTATTTCTTGTATCCCATTCATTTCATCCGTAGAATGCCCGGCTCTGATGCACATGCAGCATGAGCGACAGTCC------------------------GACAGCAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCATGAGCGACAGTCC------------------------.........	21	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACATGCAGCATGAGCGACA.....................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGCGACAGTCC------------------------GACAGCA..	24	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGCAGCATGAGCGACAGTCC------------------------.........	23	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATGCAGCATGAGCGACA.....................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGCGACAGTCC------------------------GACA.....	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATGCAGCATGAGCGACAGTCC------------------------GAC......	28	1	1.00	1	1	0	0	0	0	0	0

droYak3

CTT-------------------------------------------------------------------------------------ATTCAATCGGTTGTGATTCGA---------------------------------------------------AAAC-----AAA---------------------------------------------------------------------------------------------------------------------TATGGGGGA----------------------------------------------CACTTA----AGGGAAACTTTTTGTTC-----TATAATTGAT-------------------------------GT----------------------------------------------TTAATGTCTTTGTTAAGTATT---TCTTTCCCATTCATTTCATCCGTAGAATGCCCGGCTCTGATGTACATGCACCATGAGCGACATTCC------------------------AACAGCGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATGAGCGACATTCC------------------------AAC......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATGCCCGGCTCTGATGTACAT....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GAT------------------------------------------------------------------------------------------------TATGATTCGTCGATTCTA----------------------------TCA---------------TGGCCAAAAACCTATGCTAACAAGGAACAAAATC-----------------CAGGTGCCTAGATCT-------------T-------------------------------------------------------------------------------AATCGGAATCAAGAACAGCAGTTTAGAACAAAACAATATATTATTTAACATTTTCAGTTTTAAT-------------------------------TTTCGATAGG-------TTTTTTACCTTTAGAAAATCTTAAACTAAACC-------------------GAAATGTTTCCCATTCTTCTCATCCTTAGAATGCCCGGCTCTGATGTACACGCAGGATGAGCGACATTCC------------------------GACAGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTATTGCTCGCTTTAAGCTATTAGGTGCAAATCTATTTTATGTTATTCCAATATGGTAGAAACGGGATAGCATTATAGATCAATCTTATTTTAGCGGTTGTGGCTCTG-----------TAAAGGGACTTTGTTCGG---TATATCGGTTATGATTCCAAAAT-----ATAGGG------------------------------------------------------------------------------------------------------------------------AAA----------------------------------------------TATTTA----A-----------------------TGGGAAAGATCCT-----TATAATTTTTC--CTCTTACTTTTCAAAATAAATCAATTTTATTTAGTTCTTAAAACCATCCTTTAA-TC------------------TTACGGTTCTCCCATTCTTGTCATCCCCAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAGTTTC------------------------------------------------------------------------------CGAAATATGCGGAATATATTC--------GG------------------------TAGATTGGTGAAGATTCCAATAT-----AAAGGGTATGCAAATAAG--ACAAAATGTTTGCAAGGAC--------------TAGCATTT---------GATTTATTTATCCTATTGACGATGTTATAAAATGGCTTTTAGTATGGGTATATAGGGAA----------------------------------------------C--------------------------------------------AT-----TTTAATTATTCTTCTCTTAATTATTAATATG-----------------TCTTTATACGAAACTTTAA-TC------------------TCACGG-TT---CTCTATTCTCATCCCCAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCACCCATAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACAATCC---------------------GACGACAACAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCCTCTCTTTTCATCCGTAGAATGCCCGGCTCTGATGTACATGCAGCATGAGCGACATTCC------------------------GACAACGAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTTTCGCTTGC---------------------------------------------------------------------------CACTTTAGCGGTTAAGACTCGCCGTTTCGGTTGTTAACGGAGTTTACTCTAGGAATCAACA-----------------------------TGCAA----A-------------------------------AACCAATACTACTTAAAATG------------------------------------------------------TGGCAAAACTTAAGCTTTAATAAACTTTATG---------------------------------------------------------ATTGAA-------------------------------AC----------------------------------------------T-------------GGATTT-----------ATTTTTTATCATCCTCAGAATGCCCGGCTCTGATGTACATGCAGGATGAGCGACATTCC------------------------GACAGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTCTTAC----G-------------------------------------------------------------------------TTATGTGAGCAGTTAATAGTTGTCTCTT---------ACGG--------------ATTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCGAAGGAATTGATTA------------ATTTGTAATTTCCGACTGATAGTATTTCCC--TTCTAACTTTGGG---------------GTTTCTTTTATAAGACCTTGTTTCAA-CC------------------ATTCTTTTTTCTATTTTTTCTCATCTCCAGAATTCCCAGCTCTAATGTACATGCAGGACGAGCGACATTCC------------------------AGCAGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTACAGAATGCCCGGCTCTGATGTATATGCAAAACGAGCAACAATCC------------------------GGAAGCGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATATGCAAAACGAG..........................................	19	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCGGCTCTGATGTATATGCA.................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAACGAGCAACAATCC------------------------GGAAGC...	26	1	1.00	1	0	0	0	0	0	1

droBip1

TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCT-----CTGACTCAAT-------------------------------G-------------------------------------------------------------------------TCTACTTTTTCGTCCATTTCCAGAATGCCCGGCTCTGATGTATATGCAGGACGAGCAACCAACC------------------------GGAAGCGAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCATCCGCAGATTACCCAGCTCTGACGTATATGCAGGACGAGTGCCGACA--------CCA-GAC------CTGCAACAACAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGACGTATATGCAGGACGAGT.........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCCAGCTCTGACGT........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAGGACGAGTGCCGAC...................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACGAGTGCCGACA--------CCA-GAC------CTGC.........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTATATGCAGGACGAGTGCCGAC...................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGACA--------CCA-GAC------CTGCAACAAC...	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTCTGACGTATATGCAGGAC.............................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCATCCGCAGATTACCCAGCTCTGACGTATATGCAGGACGAGTGCCGACA--------CCA-GAC------CTGCAACAACAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCCAGCTCTGACGTAT......................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACGAGTGCCGACA--------CC........................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTATATGCAGGACGAGTGCCGACA--------CC........................	29	1	1.00	1	0	0	0	0	0	1

droWil2

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCACAGATTACCCAGCTCTGATGTATATGAAAGATGAGCGACCATTAAAACCCACCATCAC------CTACAAAGCCGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAAGATGAGCGACC.....................................	19	1	2.00	2	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTATATGAAAGATGAGC.........................................	21	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTATATGAAAGATGAGCGACC.....................................	26	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCTGATGTATATGAAA................................................	20	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCTCTGATGTATATGA..................................................	20	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCCAGCTCTGATGTAT......................................................	20	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTACCCAGCTCTGATGT........................................................	20	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAAAGATGAGCGACC.....................................	20	1	1.00	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAAAGATGAGCGAC......................................	19	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATATGAAAGATGAGC.........................................	20	1	1.00	1	0	0	0	0	1

droVir3

TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGCAGGTTGCCCAGCTCTGATGTATATGCAGGATGAGCGACGCTGT--------CC-AATGAACGCCGATGCCCTCGCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAACGCCGATGCC......	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGT--------CC-AATGAACGCCGATGCC......	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------CC-AATGAACGCCGATG........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCGACGCTGT--------CC-AAT...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAGGATGAGCGACG.....................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGCTGT--------CC-AATGAACGC.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGATGTATATGCAGGAT.............................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAGCTCTGATGTATATGCA.................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGCAGGATGAGCGACGC....................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGATGAGCGACGCTGT--------CC-......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGAGCGACGCTGT--------C........................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGCAGGATGAGCGAC......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCAGGATGAGCGACGCTGT--------CC-......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCTGATGTATATGCA.................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTGCCCAGCTCTGATGTATATGCAGGACGAGCA---------------------------------CCGCGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCAGGACGAGCA---------------------------------CC.....	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATATGCAGGACGAGC.........................................	20	1	1.00	1	0	0	0	0	0	1

droGri2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTACCCAGCTCTAATGCATATGCAGGACGAGCGACAACCT--------AG-AGAA---------GAGAACGG-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCAGCTCTAATGCA.......................................................	18	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAGGACGAGCGACAACCT--------A........................	23	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACGAGCGACAACCT--------AG-AGAA---------G........	25	1	1.00	1	1	0

dsi_14170

3r:16388057-16388206 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.1	-24.0	-23.9