ID:

dsi_14143

 Coordinate:

3r:4266660-4266809 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.8 -22.8 -22.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTGATACTGTTTTCTGAAATTAACTTGAAAGGTTTATACGAATTGAATTGGAAATATTAAATCTTCTTTTCGAAAAAAAAAAACAAACCTGCGGGTCAGTTAGAAAAACGAGCAGATCAGTATACTTCTGCGAGAACATTGAAACGCGCTACTCTCTAATGGAAGATGTTCGATGTTTGTACCTATTCCTGGTTTTCAGGTTGCACATGGTCCACTCTTTTATATTATACTCCAATCCCCCTCGGCGAC
**************************************************.((((.........(((.....))).......(((..(((....)))..)))..........(((((..........)))))..((((((((((.....(((........)))......))))))))))..(((.......)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.................................................................................................................................................................................TTGTACCTATTCCTGGTTTTCAGGGGA.............................................. 27 3 1 2.00 2 1 1 0 0 0 0 0 0
.....................................................................................................TAGAAAAACGAGCAGATCAGTATACT........................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................TCAGTTAGAAAAACGAGCAGATCAGTATACT........................................................................................................................... 31 0 1 1.00 1 0 1 0 0 0 0 0 0
.............TCTGAAATTAACTTGAAAGGCTTATAA.................................................................................................................................................................................................................. 27 2 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................TGCGGGTCAGTTAGAAAAACGAGCA....................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................CAGTTAGAAAAACGAGCAGATCAGTA............................................................................................................................... 26 0 8 0.25 2 0 0 0 0 2 0 0 0
............................................TGAAATGGAAATATTAAATCTGC....................................................................................................................................................................................... 23 2 6 0.17 1 0 0 1 0 0 0 0 0
................................................................................................................................CTGTGCGAACATTGAAAC........................................................................................................ 18 2 7 0.14 1 1 0 0 0 0 0 0 0
....................................................................................................TTAGAAAAACGAGCAGATCAG................................................................................................................................. 21 0 8 0.13 1 0 1 0 0 0 0 0 0
................................................................TTCTGTTCGAAAAAAAA......................................................................................................................................................................... 17 1 8 0.13 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTTCAATCCCCCTCGGC... 17 2 8 0.13 1 0 0 0 0 1 0 0 0
............................................................AATTTTCTTCTCGGAAAAAAA......................................................................................................................................................................... 21 3 20 0.10 2 0 0 0 0 0 2 0 0
...................................TGTAGGAATTGAATTGGAGA................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0
......................................ACGACTTGAATTGGA..................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1 0 0 0
..........................TGAAAGGTTTACACTAAT.............................................................................................................................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 0 1
...............................................................ATTCTGTTCGAAAAAAAAA........................................................................................................................................................................ 19 2 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................CCTCCTTTTCGAAAAAAA.......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

GAACTATGACAAAAGACTTTAATTGAACTTTCCAAATATGCTTAACTTAACCTTTATAATTTAGAAGAAAAGCTTTTTTTTTTTGTTTGGACGCCCAGTCAATCTTTTTGCTCGTCTAGTCATATGAAGACGCTCTTGTAACTTTGCGCGATGAGAGATTACCTTCTACAAGCTACAAACATGGATAAGGACCAAAAGTCCAACGTGTACCAGGTGAGAAAATATAATATGAGGTTAGGGGGAGCCGCTG
**************************************************.((((.........(((.....))).......(((..(((....)))..)))..........(((((..........)))))..((((((((((.....(((........)))......))))))))))..(((.......)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..............................................................AGAAGAAAACGTTTGTTTTTTTGT.................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0
..............................................................AGAAGAAAAGCGTTTTTTCGT....................................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0
.......................................................................................................................................................................................................................................AGTTTAGGGGGAGCCG... 16 1 3 0.33 1 0 1 0 0 0
..................................................................................................................................................................................ACAGGCATAAGGACCAAGAGT................................................... 21 3 3 0.33 1 0 0 1 0 0
..........................................................................................................TTTGCTCGTCTAGTCATA.............................................................................................................................. 18 0 7 0.14 1 0 1 0 0 0
..............................................................................................................................AAGTCGCTCTGGTCACTTTG........................................................................................................ 20 3 7 0.14 1 0 0 0 0 1
....................................................................................................................................................................................................................................ATGAGGTTAGTGGGA....... 15 1 7 0.14 1 0 1 0 0 0
.................................................................................................GTCAATCTTTTTGCTCGTCTAGTCAT............................................................................................................................... 26 0 8 0.13 1 0 0 0 1 0
.................................................................................................GTCAATCTTTTTGCTCGTCTA.................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0
...................................................................TAAAGCTTTTTTTTTGTGTT................................................................................................................................................................... 20 2 14 0.07 1 1 0 0 0 0
............................................................TTAGAAGGAAAGCTT............................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 1 0

Generated: 04/23/2015 at 11:45 PM