ID:

dsi_14142

 Coordinate:

2r:5433335-5433394 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5432710_5433334_-]; CDS [2r_5432710_5433334_-]; CDS [2r_5433395_5434258_-]; exon [2r_5433395_5434258_-]; intron [2r_5433335_5433394_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
GAAATGTCCTGCAACGAGACCGTGCAAGAGTTTCTTCTGTTTATCCTCGGGTAAGATTGCTTTGGTAGTATCTAAAAAGCATTCTAATCGTGTTGTTCCTCCTTCTGCAGAATCCAGCAGGTAGCCTGCACCGTGGACACTCTGGGAAACGTGCATAAAT
**************************************************...(((.((((((..(((...))).)))))).))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................................CTGCACCGTGGACACTCTGGG.............. 21 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................TGGACACTCTGGGAAACGTGCATAAA. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................ACCGTGGACACTCTGGGAAACG......... 22 0 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................CTGCACCGTGGACACTCTGGGA............. 22 0 1 1.00 1 0 0 1 0 0 0
.................................................GGTAAGATTGCTTTGGTAG............................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
...............................TTCTTCTGTTTATCCTCGGA............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................CCAGCAGGTAGCCAGCA.............................. 17 1 2 0.50 1 0 0 0 0 1 0
.............................................................ATGGTAGTATCTAAAA................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0
.................................CTTTTGTTTATCCTCGGA............................................................................................................. 18 2 15 0.07 1 0 1 0 0 0 0
...........................................................................................................CACGATCCAGAAGGTAGC................................... 18 3 20 0.05 1 0 0 0 0 1 0
....................................................................................................................................GTGCGCACTCTGGGAAA........... 17 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CTTTACAGGACGTTGCTCTGGCACGTTCTCAAAGAAGACAAATAGGAGCCCATTCTAACGAAACCATCATAGATTTTTCGTAAGATTAGCACAACAAGGAGGAAGACGTCTTAGGTCGTCCATCGGACGTGGCACCTGTGAGACCCTTTGCACGTATTTA
**************************************************...(((.((((((..(((...))).)))))).))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...................GGCACGTTCTCAAAGAAAACA........................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
............................TCAAAGAAGACAAATAGGAGC............................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................CGTCTTAGTTGGTCCAT..................................... 17 2 12 0.83 10 0 0 5 1 2 2
...................................................................................................AGGAAGAGGGTTTAGGTCGTC........................................ 21 3 3 0.33 1 0 0 0 1 0 0
................................................................................................AGGAGGAAAACAGCTTAGGTC........................................... 21 3 11 0.09 1 0 0 1 0 0 0
.................................................................................................GGAGGAAAACAGCTTAGGTC........................................... 20 3 14 0.07 1 1 0 0 0 0 0
.............................................AAGCCCATTCTAAGGACAC................................................................................................ 19 3 15 0.07 1 0 0 0 0 1 0
...........................................AGGGGCCCATCCTAAC..................................................................................................... 16 2 16 0.06 1 0 0 0 0 1 0
......AGGAGGTTGGTCTGGCAAG....................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................GAGGAAAACAGCTTAGGTC........................................... 19 3 20 0.05 1 0 0 0 1 0 0
.....................................ACCGATAGGGGCCCATTC......................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 02:17 PM